Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47251 * 2 1 4 4 S 1.81008 * 109.46884 * 120.00477 * 2 1 3 5 5 C 1.76205 * 99.99678 * 294.99408 * 4 2 1 6 6 N 1.31282 * 126.48293 * 0.03010 * 5 4 2 7 7 N 1.28530 * 109.85066 * 180.02562 * 6 5 4 8 8 C 1.30295 * 110.08116 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.34073 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47083 * 353.94105 * 9 8 7 11 11 C 1.52997 * 109.46928 * 113.93459 * 9 8 7 12 12 C 1.52998 * 109.47352 * 233.93869 * 9 8 7 13 13 N 1.36540 * 126.47854 * 179.71373 * 5 4 2 14 14 N 1.36598 * 127.14731 * 359.97438 * 13 5 4 15 15 C 1.50699 * 109.46711 * 239.99933 * 2 1 3 16 16 O 1.21290 * 120.00110 * 265.00167 * 15 2 1 17 17 N 1.34776 * 120.00077 * 85.00337 * 15 2 1 18 18 C 1.46499 * 119.99887 * 0.02562 * 17 15 2 19 19 C 1.46494 * 120.00372 * 179.97438 * 17 15 2 20 20 C 1.50697 * 109.47099 * 89.99822 * 19 17 15 21 21 H 1.07999 * 120.00150 * 0.02562 * 20 19 17 22 22 C 1.37880 * 120.00325 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99852 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00326 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47001 * 120.00293 * 24 22 20 27 27 H 1.48492 * 109.47439 * 240.00203 * 24 22 20 28 28 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46786 * 299.99911 * 1 2 3 30 30 H 1.08997 * 109.47062 * 59.99310 * 1 2 3 31 31 H 1.08994 * 109.47064 * 59.99497 * 10 9 8 32 32 H 1.08999 * 109.47059 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.46952 * 299.99456 * 10 9 8 34 34 H 1.08997 * 109.47253 * 65.31438 * 11 9 8 35 35 H 1.09006 * 109.47475 * 185.31102 * 11 9 8 36 36 H 1.09002 * 109.47417 * 305.31374 * 11 9 8 37 37 H 1.08993 * 109.47062 * 60.00105 * 12 9 8 38 38 H 1.08999 * 109.46968 * 180.02562 * 12 9 8 39 39 H 1.08999 * 109.47109 * 299.99707 * 12 9 8 40 40 H 1.00902 * 111.00009 * 95.28706 * 14 13 5 41 41 H 1.00893 * 110.99803 * 219.23797 * 14 13 5 42 42 H 1.09003 * 109.47633 * 89.99679 * 18 17 15 43 43 H 1.09005 * 109.47182 * 210.00339 * 18 17 15 44 44 H 1.09006 * 109.47326 * 329.99828 * 18 17 15 45 45 H 1.08998 * 109.47718 * 210.00423 * 19 17 15 46 46 H 1.09006 * 109.46847 * 330.00288 * 19 17 15 47 47 H 0.96998 * 120.00394 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1333 -0.8534 1.4779 5 6 1.5440 0.2422 2.7257 6 7 0.8630 1.3483 2.5352 7 7 0.5979 1.8979 3.6664 8 6 1.0890 1.1817 4.6378 9 6 0.9922 1.4878 6.1102 10 6 0.3506 2.8632 6.3041 11 6 0.1340 0.4235 6.7970 12 6 2.3935 1.4874 6.7244 13 7 1.7041 0.0981 4.0740 14 7 2.3477 -0.9160 4.7246 15 6 2.0323 -0.7104 -1.2305 16 8 2.3207 -1.8873 -1.1760 17 7 2.1610 -0.0381 -2.3914 18 6 1.8132 1.3835 -2.4571 19 6 2.6497 -0.7285 -3.5875 20 6 1.4831 -1.3088 -4.3445 21 1 0.4780 -1.1763 -3.9722 22 6 1.6986 -2.0082 -5.5130 23 7 2.9224 -2.1693 -5.9668 24 14 0.2525 -2.7281 -6.4510 25 1 -1.0094 -2.4099 -5.7356 26 1 0.2079 -2.1447 -7.8159 27 1 0.4092 -4.2016 -6.5475 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.6476 2.8635 5.8665 32 1 0.2811 3.0848 7.3691 33 1 0.9620 3.6215 5.8149 34 1 0.6377 -0.5415 6.7405 35 1 -0.0144 0.6951 7.8421 36 1 -0.8327 0.3585 6.2977 37 1 3.0048 2.2457 6.2352 38 1 2.3234 1.7084 7.7895 39 1 2.8505 0.5076 6.5863 40 1 3.3034 -0.6653 4.9291 41 1 1.8545 -1.1767 5.5653 42 1 2.6923 1.9839 -2.2228 43 1 1.4644 1.6263 -3.4608 44 1 1.0241 1.5982 -1.7364 45 1 3.1803 -0.0207 -4.2244 46 1 3.3268 -1.5304 -3.2929 47 1 3.0741 -2.6609 -6.7890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072847367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = 65.958552 kcal Electronic energy + Delta-G solvation = -27825.542860 eV Core-core repulsion = 23979.227395 eV Total energy + Delta-G solvation = -3846.315465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.24718 -39.14731 -37.74496 -36.45037 -34.89944 -33.26872 -32.25700 -30.34841 -29.89676 -28.01842 -27.82866 -27.77730 -25.97883 -24.34148 -23.58443 -22.74776 -22.36948 -20.45950 -19.03168 -18.07438 -17.71870 -16.92122 -16.61879 -16.51506 -15.95653 -15.62071 -15.20015 -14.69977 -14.60212 -14.39039 -14.30685 -13.93430 -13.24892 -13.04199 -12.98144 -12.79850 -12.41703 -12.36750 -12.30970 -12.13857 -12.02092 -11.83099 -11.78131 -11.70226 -11.62318 -11.51571 -11.25088 -11.19830 -10.86373 -10.75236 -10.59906 -10.19462 -10.14755 -10.02230 -9.81450 -9.61919 -9.03341 -8.43713 -7.71904 -7.57661 -6.04465 -4.09101 0.98446 1.37162 1.97143 2.07381 2.54836 3.27482 3.30994 3.38839 3.43743 3.47124 3.89281 4.00547 4.24517 4.25998 4.44905 4.51894 4.80898 4.89267 4.99027 5.05417 5.07518 5.08348 5.18180 5.27330 5.30944 5.32635 5.36383 5.40205 5.45121 5.63076 5.64269 5.67341 5.86779 5.89812 5.92914 5.99319 6.05134 6.21815 6.39230 6.98884 7.09576 7.40518 7.48228 7.91438 8.21641 8.30069 8.40679 8.83152 8.99560 9.55877 11.03774 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.002330 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.995722 B =12016.130015 C =12190.963101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.117 0.883 4 S 0.096 5.904 5 C 0.182 3.818 6 N -0.292 5.292 7 N -0.266 5.266 8 C 0.153 3.847 9 C 0.019 3.981 10 C -0.129 4.129 11 C -0.146 4.146 12 C -0.149 4.149 13 N -0.307 5.307 14 N -0.584 5.584 15 C 0.527 3.473 16 O -0.528 6.528 17 N -0.591 5.591 18 C 0.075 3.925 19 C 0.245 3.755 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.365 0.635 41 H 0.372 0.628 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 9.124 28.127 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.248 4.248 3 H 0.135 0.865 4 S 0.325 5.675 5 C -0.192 4.192 6 N -0.138 5.138 7 N -0.106 5.106 8 C -0.119 4.119 9 C 0.017 3.983 10 C -0.187 4.187 11 C -0.204 4.204 12 C -0.208 4.208 13 N -0.090 5.090 14 N -0.218 5.218 15 C 0.310 3.690 16 O -0.405 6.405 17 N -0.322 5.322 18 C -0.069 4.069 19 C 0.126 3.874 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.878 8.093 26.667 27.931 hybrid contribution -0.571 0.313 0.770 1.008 sum -2.449 8.406 27.437 28.800 Atomic orbital electron populations 1.22005 0.90132 1.03837 1.04079 1.23729 1.02265 1.04032 0.94755 0.86491 1.86452 1.66480 1.23811 0.90733 1.27255 1.03818 1.01469 0.86669 1.74839 1.16260 1.05307 1.17353 1.73926 1.19190 1.23140 0.94314 1.25355 1.01034 0.87234 0.98246 1.19088 0.97090 0.98488 0.83679 1.21701 1.01834 0.93427 1.01715 1.21998 1.00156 0.96877 1.01362 1.22032 0.94781 1.01864 1.02075 1.44891 1.42778 1.16310 1.05003 1.59619 1.05243 1.24391 1.32546 1.19326 0.79286 0.86969 0.83442 1.90716 1.50215 1.15106 1.84457 1.48054 1.63564 1.10006 1.10624 1.21799 0.99585 0.82039 1.03444 1.19373 0.95393 0.92829 0.79787 1.21454 0.93436 1.34461 1.07107 0.92288 1.24938 0.95957 0.95924 0.97311 1.69940 1.19590 1.41565 1.22252 0.86433 0.82528 0.78985 0.79434 1.19753 1.20970 1.20857 0.91158 0.90002 0.90777 0.91191 0.91628 0.91584 0.93001 0.90510 0.91385 0.91513 0.90397 0.93410 0.81622 0.80826 0.93411 0.90331 0.91879 0.94633 0.93642 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.78 37.16 0.33 -1.88 16 2 C -0.11 -1.91 1.85 -27.88 -0.05 -1.97 16 3 H 0.12 1.78 6.92 -51.92 -0.36 1.42 16 4 S 0.10 1.52 21.02 -107.50 -2.26 -0.74 16 5 C 0.18 2.61 7.88 -88.34 -0.70 1.91 16 6 N -0.29 -4.50 9.74 30.68 0.30 -4.20 16 7 N -0.27 -3.76 11.51 32.99 0.38 -3.38 16 8 C 0.15 1.65 6.36 -153.99 -0.98 0.68 16 9 C 0.02 0.13 0.85 -155.66 -0.13 0.00 16 10 C -0.13 -0.84 7.99 37.16 0.30 -0.55 16 11 C -0.15 -0.74 8.35 37.16 0.31 -0.43 16 12 C -0.15 -0.70 8.37 37.16 0.31 -0.38 16 13 N -0.31 -3.44 3.80 -9.93 -0.04 -3.47 16 14 N -0.58 -4.55 9.42 60.35 0.57 -3.98 16 15 C 0.53 11.19 6.79 -10.99 -0.07 11.12 16 16 O -0.53 -13.33 15.72 5.55 0.09 -13.24 16 17 N -0.59 -12.71 2.86 -182.95 -0.52 -13.23 16 18 C 0.08 1.23 9.87 59.85 0.59 1.82 16 19 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 20 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 21 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 24 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.23 5.91 -51.92 -0.31 0.92 16 30 H 0.07 1.10 6.84 -51.93 -0.36 0.75 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.21 5.99 -51.93 -0.31 -0.10 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.05 0.17 5.97 -51.93 -0.31 -0.14 16 40 H 0.36 2.07 8.43 -181.36 -1.53 0.54 16 41 H 0.37 1.95 6.40 -181.37 -1.16 0.79 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.06 0.89 5.17 -51.93 -0.27 0.62 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -35.53 389.90 -9.62 -45.14 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -9.18 Total: -2.98 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.55 Total: 3.11 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 1.42 Total: -54.14 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.26 Total: -0.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.53 -9.62 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072847367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.102 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds