Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47331 * 2 1 4 4 C 1.46904 * 111.00076 * 302.64945 * 3 2 1 5 5 C 1.50699 * 109.46620 * 296.30622 * 4 3 2 6 6 H 1.08001 * 119.99974 * 354.80160 * 5 4 3 7 7 C 1.37873 * 120.00162 * 174.80726 * 5 4 3 8 8 N 1.31518 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47387 * 59.99730 * 9 7 5 11 11 H 1.48497 * 109.47739 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47033 * 300.00262 * 9 7 5 13 13 C 1.46906 * 110.99626 * 66.59296 * 3 2 1 14 14 N 1.46500 * 109.46741 * 66.05269 * 13 3 2 15 15 N 1.40178 * 126.35739 * 90.02348 * 14 13 3 16 16 C 1.29413 * 108.13190 * 179.97438 * 15 14 13 17 17 C 1.50700 * 125.57897 * 180.02562 * 16 15 14 18 18 N 1.37307 * 108.84043 * 0.02562 * 16 15 14 19 19 C 1.46498 * 125.83026 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47195 * 89.99741 * 19 18 16 21 21 O 1.21275 * 120.00069 * 359.97438 * 20 19 18 22 22 N 1.34787 * 119.99625 * 179.97438 * 20 19 18 23 23 C 1.46495 * 119.99535 * 179.97438 * 22 20 19 24 24 C 1.46495 * 120.00043 * 359.97438 * 22 20 19 25 25 C 1.34820 * 108.34227 * 0.25886 * 18 16 15 26 26 S 1.71196 * 126.30300 * 179.73354 * 25 18 16 27 27 H 1.09006 * 109.47033 * 65.84337 * 1 2 3 28 28 H 1.08998 * 109.46824 * 185.84317 * 1 2 3 29 29 H 1.09002 * 109.46946 * 305.84874 * 1 2 3 30 30 H 1.09000 * 109.47286 * 240.00108 * 2 1 3 31 31 H 1.09000 * 109.46971 * 119.99950 * 2 1 3 32 32 H 1.09002 * 109.47300 * 56.30459 * 4 3 2 33 33 H 1.09003 * 109.47117 * 176.31041 * 4 3 2 34 34 H 0.96997 * 120.00021 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47565 * 306.04807 * 13 3 2 36 36 H 1.09003 * 109.47044 * 186.04282 * 13 3 2 37 37 H 1.09002 * 109.47205 * 269.97953 * 17 16 15 38 38 H 1.09009 * 109.47155 * 29.97719 * 17 16 15 39 39 H 1.09004 * 109.47541 * 149.97396 * 17 16 15 40 40 H 1.09003 * 109.47113 * 329.99387 * 19 18 16 41 41 H 1.09005 * 109.46898 * 209.99391 * 19 18 16 42 42 H 1.09004 * 109.47006 * 90.00121 * 23 22 20 43 43 H 1.09000 * 109.47200 * 209.99755 * 23 22 20 44 44 H 1.09006 * 109.47566 * 330.00126 * 23 22 20 45 45 H 1.08998 * 109.47095 * 0.02562 * 24 22 20 46 46 H 1.08998 * 109.47150 * 119.99910 * 24 22 20 47 47 H 1.09002 * 109.47112 * 239.99891 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4977 2.1280 -1.1548 5 6 2.0195 1.5109 -2.4267 6 1 2.7389 0.7066 -2.3811 7 6 1.5787 1.9730 -3.6486 8 7 0.7031 2.9527 -3.7041 9 14 2.2261 1.2085 -5.2252 10 1 1.8923 -0.2384 -5.2473 11 1 1.6010 1.8790 -6.3935 12 1 3.7001 1.3775 -5.2883 13 6 1.6815 2.0629 1.2587 14 7 2.4116 1.4351 2.3628 15 7 3.6815 1.7983 2.8322 16 6 3.9870 1.0140 3.8152 17 6 5.2674 1.0604 4.6086 18 7 2.9536 0.1328 4.0171 19 6 2.9092 -0.9177 5.0372 20 6 2.2955 -0.3672 6.2987 21 8 1.9315 0.7888 6.3416 22 7 2.1512 -1.1598 7.3793 23 6 1.5551 -0.6246 8.6058 24 6 2.5903 -2.5565 7.3273 25 6 1.9889 0.3959 3.1128 26 16 0.4996 -0.4325 2.9493 27 1 -0.3633 0.4206 -0.9377 28 1 -0.3633 -1.0223 0.1046 29 1 -0.3633 0.6019 0.8330 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4084 2.0867 -1.1511 33 1 1.8222 3.1669 -1.0952 34 1 0.3927 3.2776 -4.5638 35 1 0.6097 1.9812 1.4388 36 1 1.9595 3.1147 1.1909 37 1 6.0087 0.4128 4.1403 38 1 5.6427 2.0836 4.6334 39 1 5.0771 0.7185 5.6260 40 1 3.9213 -1.2639 5.2465 41 1 2.3078 -1.7513 4.6744 42 1 0.4755 -0.7725 8.5797 43 1 1.9721 -1.1435 9.4689 44 1 1.7742 0.4406 8.6815 45 1 3.0046 -2.7706 6.3421 46 1 3.3537 -2.7258 8.0866 47 1 1.7398 -3.2120 7.5145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125311504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = 62.633186 kcal Electronic energy + Delta-G solvation = -28584.460186 eV Core-core repulsion = 24738.000523 eV Total energy + Delta-G solvation = -3846.459663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.92851 -40.97280 -39.28999 -36.74488 -36.33530 -34.87249 -34.28884 -31.59865 -30.83195 -30.26748 -28.82110 -28.35927 -26.98981 -26.07075 -25.05271 -24.25410 -22.55730 -21.57418 -20.70868 -19.06886 -18.70198 -18.43457 -17.92049 -17.59105 -17.35772 -16.99496 -16.77945 -16.41433 -16.37102 -15.82097 -15.27423 -14.79716 -14.65608 -14.57878 -14.34660 -14.03116 -13.86596 -13.64695 -13.48942 -13.39952 -13.29481 -13.19532 -13.13730 -12.96056 -12.85061 -12.82948 -12.62060 -12.52152 -12.48173 -12.20140 -11.96332 -11.67645 -11.43802 -11.37994 -10.95392 -10.60738 -9.78678 -9.24409 -8.91955 -8.63523 -8.20362 -6.29698 -0.07288 0.10009 0.64525 1.05370 1.33731 1.36876 1.41023 1.43810 1.51658 1.98295 2.40002 2.89375 3.12903 3.17041 3.24614 3.36270 3.48001 3.92763 3.93869 4.04254 4.23874 4.26586 4.27753 4.41436 4.49356 4.51643 4.57597 4.58489 4.72054 4.77948 4.79014 4.88079 4.91084 4.97439 4.99948 5.08322 5.22148 5.29279 5.33964 5.42082 5.52252 5.62236 5.94601 6.03003 6.16122 6.20758 6.40721 6.82223 6.92055 7.38512 8.90325 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022447 B = 0.002786 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.077246 B =10046.852075 C =10472.520309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 N -0.548 5.548 4 C 0.212 3.788 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.308 3.692 14 N -0.362 5.362 15 N -0.300 5.300 16 C 0.284 3.716 17 C -0.074 4.074 18 N -0.477 5.477 19 C 0.092 3.908 20 C 0.498 3.502 21 O -0.576 6.576 22 N -0.610 5.610 23 C 0.083 3.917 24 C 0.062 3.938 25 C 0.470 3.530 26 S -0.639 6.639 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.063 0.937 32 H -0.008 1.008 33 H 0.009 0.991 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.188 0.812 41 H 0.145 0.855 42 H 0.049 0.951 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 -12.540 28.146 33.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.053 4.053 3 N -0.273 5.273 4 C 0.087 3.913 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.098 3.902 14 N -0.152 5.152 15 N -0.120 5.120 16 C 0.005 3.995 17 C -0.133 4.133 18 N -0.177 5.177 19 C -0.032 4.032 20 C 0.285 3.715 21 O -0.456 6.456 22 N -0.343 5.343 23 C -0.059 4.059 24 C -0.079 4.079 25 C 0.106 3.894 26 S -0.511 6.511 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.009 0.991 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.205 0.795 41 H 0.162 0.838 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.761 -11.465 27.276 31.840 hybrid contribution -0.891 0.002 -0.607 1.078 sum 10.870 -11.463 26.669 30.997 Atomic orbital electron populations 1.22089 0.97378 1.01750 0.99722 1.21934 0.93890 0.88968 1.00487 1.62254 1.60254 1.03644 1.01189 1.19394 0.93073 0.92408 0.86459 1.21234 1.24895 1.18940 0.90704 0.92406 1.25812 0.95200 0.95540 1.02581 1.70061 1.32286 1.28101 1.26537 0.85477 0.78715 0.78599 0.78079 1.19523 1.20701 1.19346 1.22162 0.92940 0.95306 0.79841 1.49430 1.13083 1.25286 1.27391 1.77310 0.97100 1.23607 1.14007 1.25995 0.94000 0.85735 0.93725 1.20911 0.86060 1.07892 0.98446 1.45829 1.13651 1.30423 1.27793 1.22271 1.08619 0.88583 0.83751 1.20875 0.79186 0.85938 0.85529 1.90777 1.51408 1.19850 1.83526 1.47792 1.60968 1.13241 1.12330 1.21744 0.98111 1.00163 0.85908 1.22296 1.01793 0.78547 1.05309 1.23565 0.93186 0.87547 0.85106 1.93331 1.10309 1.61251 1.86242 0.95162 0.92605 0.92117 0.92347 0.91913 0.99073 0.97278 0.92602 0.90271 0.87096 0.84853 0.86956 0.86890 0.79480 0.83782 0.93253 0.87292 0.92470 0.88713 0.88529 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.72 7.71 71.98 0.56 -6.17 16 2 C 0.08 3.38 5.28 86.30 0.46 3.83 16 3 N -0.55 -25.58 4.86 -913.13 -4.44 -30.02 16 4 C 0.21 11.50 4.38 85.56 0.37 11.87 16 5 C -0.52 -29.92 8.42 25.60 0.22 -29.71 16 6 H 0.06 3.32 7.14 -2.91 -0.02 3.30 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.31 12.78 5.85 170.80 1.00 13.78 16 14 N -0.36 -13.50 3.59 -359.53 -1.29 -14.79 16 15 N -0.30 -9.56 12.53 -49.62 -0.62 -10.18 16 16 C 0.28 6.35 7.98 137.70 1.10 7.45 16 17 C -0.07 -0.61 9.98 71.24 0.71 0.10 16 18 N -0.48 -11.73 2.23 -520.52 -1.16 -12.89 16 19 C 0.09 1.31 4.29 85.63 0.37 1.68 16 20 C 0.50 9.36 7.74 87.66 0.68 10.04 16 21 O -0.58 -17.35 16.01 -3.01 -0.05 -17.40 16 22 N -0.61 -6.91 3.27 -871.89 -2.85 -9.77 16 23 C 0.08 0.90 10.48 127.77 1.34 2.23 16 24 C 0.06 0.11 10.60 127.77 1.35 1.46 16 25 C 0.47 16.39 6.61 178.99 1.18 17.57 16 26 S -0.64 -25.31 24.76 -56.49 -1.40 -26.71 16 27 H 0.03 1.48 6.62 -2.38 -0.02 1.46 16 28 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.74 4.71 -2.39 -0.01 2.73 16 30 H 0.06 2.79 6.89 -2.39 -0.02 2.78 16 31 H 0.06 2.71 5.03 -2.39 -0.01 2.70 16 32 H -0.01 -0.49 6.18 -2.39 -0.01 -0.51 16 33 H 0.01 0.52 7.98 -2.39 -0.02 0.50 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.08 3.43 5.72 -2.39 -0.01 3.42 16 36 H 0.11 4.45 7.96 -2.39 -0.02 4.43 16 37 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.11 0.37 7.71 -2.39 -0.02 0.35 16 40 H 0.19 0.32 7.30 -2.39 -0.02 0.30 16 41 H 0.14 2.12 7.27 -2.38 -0.02 2.10 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.11 0.36 8.07 -2.39 -0.02 0.34 16 44 H 0.06 0.87 7.42 -2.38 -0.02 0.85 16 45 H 0.09 -0.13 5.77 -2.39 -0.01 -0.14 16 46 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -88.98 385.12 1.28 -87.69 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.99 Total: 7.88 kcal Atomic # 6 Polarization: 25.22 SS G_CDS: 9.80 Total: 35.02 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -10.08 Total: -133.61 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -25.31 SS G_CDS: -1.40 Total: -26.71 kcal Total: -88.98 1.28 -87.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125311504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.327 kcal (2) G-P(sol) polarization free energy of solvation -88.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds