Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00094 * 2 1 4 4 O 1.20824 * 120.00151 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46999 * 174.93984 * 5 3 2 7 7 H 1.09001 * 109.38203 * 183.29631 * 6 5 3 8 8 C 1.50247 * 109.39131 * 63.60283 * 6 5 3 9 9 O 1.21289 * 118.62482 * 42.64113 * 8 6 5 10 10 N 1.33719 * 122.75614 * 222.64494 * 8 6 5 11 11 C 1.46009 * 122.92492 * 1.68407 * 10 8 6 12 12 C 1.52986 * 110.04298 * 341.83840 * 11 10 8 13 13 N 1.46906 * 109.38468 * 303.08137 * 6 5 3 14 14 C 1.46902 * 111.00474 * 293.82248 * 13 6 5 15 15 C 1.52997 * 109.47024 * 294.46231 * 14 13 6 16 16 C 1.50700 * 109.47040 * 175.29093 * 15 14 13 17 17 O 1.21286 * 119.99674 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00162 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99915 * 359.97438 * 18 16 15 20 20 C 1.46503 * 119.99909 * 179.97438 * 18 16 15 21 21 C 1.50698 * 109.47061 * 89.99959 * 20 18 16 22 22 H 1.08004 * 120.00352 * 359.97438 * 21 20 18 23 23 C 1.37885 * 119.99888 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99757 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99778 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47371 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47363 * 119.99891 * 25 23 21 28 28 H 1.48506 * 109.46633 * 239.99569 * 25 23 21 29 29 H 1.09004 * 109.47010 * 60.00504 * 1 2 3 30 30 H 1.09002 * 109.46773 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47236 * 300.00069 * 1 2 3 32 32 H 1.08993 * 109.47062 * 294.93647 * 5 3 2 33 33 H 1.08996 * 109.47071 * 54.93478 * 5 3 2 34 34 H 0.97000 * 118.54150 * 181.68696 * 10 8 6 35 35 H 1.08999 * 109.37481 * 221.67069 * 11 10 8 36 36 H 1.08996 * 109.28548 * 101.95631 * 11 10 8 37 37 H 1.08993 * 109.59778 * 290.52308 * 12 11 10 38 38 H 1.08996 * 109.72366 * 170.13859 * 12 11 10 39 39 H 1.09003 * 109.46256 * 54.45920 * 14 13 6 40 40 H 1.08994 * 109.47025 * 174.45288 * 14 13 6 41 41 H 1.09006 * 109.46592 * 295.28423 * 15 14 13 42 42 H 1.08990 * 109.47575 * 55.28255 * 15 14 13 43 43 H 1.09003 * 109.46950 * 90.00691 * 19 18 16 44 44 H 1.09002 * 109.47325 * 209.99793 * 19 18 16 45 45 H 1.08994 * 109.47553 * 330.00735 * 19 18 16 46 46 H 1.09008 * 109.46781 * 209.99628 * 20 18 16 47 47 H 1.08991 * 109.47219 * 329.99498 * 20 18 16 48 48 H 0.97000 * 119.99543 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0004 2.7365 -0.1277 7 1 5.0876 2.7872 -0.1869 8 6 3.5323 3.5024 1.0772 9 8 3.6480 2.9919 2.1713 10 7 2.9934 4.7234 0.9939 11 6 2.7771 5.4104 -0.2762 12 6 3.6322 4.7699 -1.3711 13 7 3.4182 3.3137 -1.3467 14 6 3.9767 2.6794 -2.5483 15 6 5.4673 3.0083 -2.6526 16 6 6.0653 2.2647 -3.8191 17 8 5.3679 1.5425 -4.4996 18 7 7.3749 2.4023 -4.1060 19 6 8.2170 3.2752 -3.2843 20 6 7.9563 1.6790 -5.2397 21 6 7.8536 2.5260 -6.4819 22 1 7.4001 3.5050 -6.4321 23 6 8.3375 2.0507 -7.6823 24 7 8.8892 0.8584 -7.7430 25 14 8.2108 3.1008 -9.2220 26 1 7.5544 4.3906 -8.8889 27 1 9.5714 3.3610 -9.7571 28 1 7.4054 2.3854 -10.2441 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9522 0.8610 0.9310 33 1 3.9598 0.7045 -0.8420 34 1 2.7348 5.1727 1.8137 35 1 3.0514 6.4600 -0.1708 36 1 1.7246 5.3374 -0.5502 37 1 4.6843 4.9878 -1.1877 38 1 3.3411 5.1658 -2.3440 39 1 3.8467 1.5991 -2.4825 40 1 3.4591 3.0545 -3.4311 41 1 5.5930 4.0806 -2.8024 42 1 5.9708 2.7082 -1.7338 43 1 8.6444 2.6996 -2.4632 44 1 9.0199 3.6864 -3.8962 45 1 7.6134 4.0888 -2.8821 46 1 9.0045 1.4624 -5.0333 47 1 7.4152 0.7451 -5.3908 48 1 9.2293 0.5238 -8.5876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271481439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = -133.860774 kcal Electronic energy + Delta-G solvation = -31352.008639 eV Core-core repulsion = 27021.982736 eV Total energy + Delta-G solvation = -4330.025903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29214 -39.94844 -39.15531 -37.61589 -36.45549 -35.35048 -34.85454 -32.73311 -32.27082 -30.67700 -28.90168 -28.04310 -27.32363 -26.11681 -25.45760 -23.69436 -23.02475 -21.59186 -21.08928 -19.40542 -18.28536 -17.74455 -17.57976 -17.38503 -16.61426 -16.53233 -16.40200 -16.28251 -15.59469 -15.38686 -15.12103 -14.92233 -14.40666 -14.39127 -14.04194 -13.79960 -13.53840 -13.36768 -13.11315 -12.75024 -12.59898 -12.36455 -12.28689 -12.20127 -12.13066 -12.07000 -11.90984 -11.65228 -11.53648 -11.24185 -10.96174 -10.82867 -10.80330 -10.63580 -10.42087 -10.20654 -10.04222 -9.66231 -9.26657 -9.03735 -8.61453 -8.47897 -7.71526 -6.08772 -4.13765 2.28880 2.41622 2.64370 3.04243 3.26368 3.30071 3.34799 3.38774 3.44367 3.90382 4.16569 4.36078 4.40762 4.52723 4.67755 4.84379 4.87566 4.98767 4.99515 5.01364 5.06477 5.07214 5.13047 5.23624 5.26060 5.33019 5.41123 5.41555 5.43605 5.61617 5.64677 5.74868 5.85983 6.12725 6.14494 6.35190 6.44120 6.59451 6.71454 6.99177 7.07409 7.38887 7.47179 7.78776 7.87234 8.00680 8.18290 8.34087 8.84603 9.01554 9.51563 10.99367 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.002719 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.467069 B =10296.901601 C =10973.251171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.480 6.480 5 C -0.102 4.102 6 C 0.073 3.927 7 H 0.094 0.906 8 C 0.541 3.459 9 O -0.558 6.558 10 N -0.709 5.709 11 C 0.119 3.881 12 C 0.032 3.968 13 N -0.513 5.513 14 C 0.064 3.936 15 C -0.181 4.181 16 C 0.507 3.493 17 O -0.540 6.540 18 N -0.602 5.602 19 C 0.084 3.916 20 C 0.244 3.756 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.399 0.601 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.032 0.968 47 H 0.044 0.956 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 6.865 18.206 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.365 6.365 5 C -0.140 4.140 6 C -0.039 4.039 7 H 0.111 0.889 8 C 0.328 3.672 9 O -0.437 6.437 10 N -0.360 5.360 11 C -0.006 4.006 12 C -0.096 4.096 13 N -0.237 5.237 14 C -0.064 4.064 15 C -0.223 4.223 16 C 0.293 3.707 17 O -0.418 6.418 18 N -0.334 5.334 19 C -0.060 4.060 20 C 0.125 3.875 21 C -0.565 4.565 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.521 6.201 18.079 22.849 hybrid contribution 0.718 1.095 -0.768 1.518 sum -11.803 7.296 17.311 22.185 Atomic orbital electron populations 1.23189 0.76546 1.03375 1.02339 1.86491 1.23275 1.33736 1.84617 1.23291 0.91649 0.81468 0.72896 1.90659 1.66534 1.35832 1.43521 1.21383 0.89479 0.96074 1.07033 1.21601 0.99146 0.93594 0.89526 0.88881 1.19715 0.76322 0.81257 0.89954 1.90745 1.57232 1.67502 1.28187 1.45339 1.62963 1.17692 1.10056 1.21476 1.01077 0.95278 0.82761 1.22529 0.98541 0.88279 1.00287 1.62884 1.56305 1.03553 1.00944 1.22176 0.91088 1.01031 0.92064 1.22410 0.98829 1.02110 0.98940 1.20107 0.82500 0.82772 0.85351 1.90688 1.59683 1.39750 1.51678 1.48187 1.08185 1.45662 1.31402 1.21626 0.95848 0.93531 0.95028 1.19302 0.93532 0.92801 0.81845 1.21450 1.39148 1.02684 0.93253 0.92481 1.24947 0.95095 0.95144 0.98962 1.69942 1.39825 1.17117 1.26408 0.86440 0.77641 0.80359 0.82947 1.19838 1.20957 1.20829 0.91866 0.88387 0.92273 0.85966 0.86393 0.76565 0.90348 0.90540 0.93286 0.88084 0.89289 0.88787 0.89160 0.89747 0.93754 0.90724 0.92685 0.95042 0.93777 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.34 10.57 -39.25 -0.41 -4.76 16 3 C 0.47 5.92 7.51 36.01 0.27 6.19 16 4 O -0.48 -6.89 13.81 -18.75 -0.26 -7.15 16 5 C -0.10 -1.09 5.09 -27.88 -0.14 -1.23 16 6 C 0.07 0.78 1.94 -69.08 -0.13 0.64 16 7 H 0.09 0.87 6.09 -51.93 -0.32 0.56 16 8 C 0.54 6.53 5.71 -11.68 -0.07 6.46 16 9 O -0.56 -8.43 17.00 5.55 0.09 -8.33 16 10 N -0.71 -6.72 5.52 -61.07 -0.34 -7.05 16 11 C 0.12 0.87 7.39 -4.31 -0.03 0.83 16 12 C 0.03 0.26 4.70 -3.67 -0.02 0.24 16 13 N -0.51 -5.41 3.39 -228.06 -0.77 -6.19 16 14 C 0.06 0.78 4.52 -3.82 -0.02 0.76 16 15 C -0.18 -2.26 3.51 -27.88 -0.10 -2.36 16 16 C 0.51 9.63 7.67 -10.99 -0.08 9.55 16 17 O -0.54 -12.67 15.50 5.55 0.09 -12.58 16 18 N -0.60 -12.06 2.86 -182.95 -0.52 -12.58 16 19 C 0.08 1.23 10.24 59.85 0.61 1.84 16 20 C 0.24 6.22 5.16 -5.19 -0.03 6.20 16 21 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 22 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 25 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 32 H 0.12 1.21 7.70 -51.93 -0.40 0.81 16 33 H 0.12 1.15 6.58 -51.93 -0.34 0.80 16 34 H 0.40 3.29 8.84 -40.82 -0.36 2.93 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.37 7.07 -51.93 -0.37 0.00 16 38 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.09 1.19 6.12 -51.93 -0.32 0.87 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 0.99 6.18 -51.93 -0.32 0.66 16 42 H 0.08 0.89 6.18 -51.93 -0.32 0.57 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 45 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 46 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 47 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -36.82 387.57 -6.88 -43.70 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.23 Total: 0.89 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 0.91 Total: 17.23 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.90 Total: -51.31 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.49 Total: -32.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.82 -6.88 -43.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271481439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.160 kcal (2) G-P(sol) polarization free energy of solvation -36.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds