Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99759 * 2 1 4 4 O 1.20818 * 120.00312 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.46907 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.30488 * 57.40917 * 6 5 3 8 8 C 1.50260 * 109.38394 * 177.14912 * 6 5 3 9 9 O 1.21290 * 118.62335 * 317.33389 * 8 6 5 10 10 N 1.33709 * 122.75276 * 137.36023 * 8 6 5 11 11 C 1.46006 * 122.92829 * 358.30713 * 10 8 6 12 12 C 1.52979 * 110.04011 * 18.16531 * 11 10 8 13 13 N 1.46904 * 109.38776 * 297.66200 * 6 5 3 14 14 C 1.46903 * 111.00228 * 312.91717 * 13 6 5 15 15 C 1.52994 * 109.46935 * 175.63968 * 14 13 6 16 16 C 1.50702 * 109.47090 * 180.02562 * 15 14 13 17 17 O 1.21282 * 119.99680 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00176 * 180.02562 * 16 15 14 19 19 C 1.46498 * 119.99926 * 359.97438 * 18 16 15 20 20 C 1.46505 * 119.99878 * 180.02562 * 18 16 15 21 21 C 1.50698 * 109.47543 * 89.99612 * 20 18 16 22 22 H 1.08004 * 119.99896 * 0.02562 * 21 20 18 23 23 C 1.37872 * 120.00334 * 179.97438 * 21 20 18 24 24 N 1.31514 * 119.99967 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99770 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47119 * 89.99887 * 25 23 21 27 27 H 1.48498 * 109.47291 * 209.99708 * 25 23 21 28 28 H 1.48499 * 109.47163 * 330.00007 * 25 23 21 29 29 H 1.08997 * 109.47131 * 60.00145 * 1 2 3 30 30 H 1.09007 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47140 * 299.99814 * 1 2 3 32 32 H 1.09007 * 109.46832 * 59.99755 * 5 3 2 33 33 H 1.08996 * 109.46948 * 300.00014 * 5 3 2 34 34 H 0.97005 * 118.53914 * 178.34066 * 10 8 6 35 35 H 1.09001 * 109.37552 * 138.34159 * 11 10 8 36 36 H 1.09003 * 109.38018 * 257.99024 * 11 10 8 37 37 H 1.09001 * 109.59781 * 69.48148 * 12 11 10 38 38 H 1.09003 * 109.59169 * 189.78268 * 12 11 10 39 39 H 1.09007 * 109.46633 * 295.63701 * 14 13 6 40 40 H 1.08995 * 109.46823 * 55.63805 * 14 13 6 41 41 H 1.08997 * 109.47129 * 299.99491 * 15 14 13 42 42 H 1.09002 * 109.47402 * 59.99864 * 15 14 13 43 43 H 1.08996 * 109.46983 * 90.00563 * 19 18 16 44 44 H 1.09007 * 109.46723 * 210.00273 * 19 18 16 45 45 H 1.08995 * 109.47461 * 329.99846 * 19 18 16 46 46 H 1.09005 * 109.46504 * 209.99402 * 20 18 16 47 47 H 1.08998 * 109.47115 * 329.99619 * 20 18 16 48 48 H 0.97000 * 119.99429 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5705 3.2453 0.8660 8 6 5.4990 2.8190 0.0709 9 8 6.0834 2.0777 0.8325 10 7 6.2155 3.6709 -0.6699 11 6 5.6127 4.5791 -1.6412 12 6 4.1169 4.7312 -1.3586 13 7 3.5219 3.3913 -1.2282 14 6 3.8161 2.5674 -2.4082 15 6 3.2094 3.2215 -3.6511 16 6 3.5107 2.3760 -4.8616 17 8 4.1484 1.3513 -4.7420 18 7 3.0725 2.7590 -6.0772 19 6 2.3027 3.9970 -6.2216 20 6 3.3650 1.9366 -7.2538 21 6 2.2603 0.9307 -7.4510 22 1 1.4238 0.9066 -6.7683 23 6 2.3170 0.0418 -8.5034 24 7 1.3532 -0.8363 -8.6750 25 14 3.7628 0.0850 -9.6854 26 1 4.8340 -0.8167 -9.1904 27 1 3.3179 -0.3659 -11.0285 28 1 4.2862 1.4717 -9.7770 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7805 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 7.1789 3.6859 -0.5573 35 1 6.0947 5.5543 -1.5722 36 1 5.7521 4.1790 -2.6455 37 1 3.9746 5.2863 -0.4314 38 1 3.6420 5.2659 -2.1813 39 1 4.8958 2.4831 -2.5324 40 1 3.3871 1.5744 -2.2741 41 1 2.1298 3.3058 -3.5269 42 1 3.6384 4.2146 -3.7851 43 1 2.9830 4.8283 -6.4065 44 1 1.6119 3.8996 -7.0593 45 1 1.7403 4.1841 -5.3069 46 1 3.4364 2.5750 -8.1345 47 1 4.3100 1.4141 -7.1061 48 1 1.3934 -1.4619 -9.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271481440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -125.497203 kcal Electronic energy + Delta-G solvation = -31570.938912 eV Core-core repulsion = 27241.275681 eV Total energy + Delta-G solvation = -4329.663231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50079 -40.15327 -39.17743 -37.71718 -36.51604 -35.10748 -34.88367 -32.77495 -32.35135 -30.84603 -29.00905 -28.52008 -27.34669 -26.16231 -25.38215 -23.97671 -22.85955 -21.62859 -20.96353 -18.88735 -18.52912 -17.89342 -17.66332 -17.14001 -16.97497 -16.76188 -16.39927 -16.26145 -16.06686 -15.49227 -15.17941 -14.93805 -14.67778 -14.22236 -13.97658 -13.76252 -13.64552 -13.24193 -13.08431 -12.97019 -12.74112 -12.41201 -12.29717 -12.25943 -12.07271 -12.04454 -11.85854 -11.71615 -11.44110 -11.39865 -10.97121 -10.88683 -10.77146 -10.54447 -10.53692 -10.42371 -10.17205 -9.56854 -9.45319 -9.07464 -8.60946 -8.50939 -7.74954 -6.10593 -4.09563 2.17909 2.25429 2.55856 2.95594 3.26744 3.27431 3.32921 3.34571 3.40541 3.91151 4.08147 4.31703 4.37535 4.46454 4.59802 4.73143 4.81011 4.95144 5.00095 5.08478 5.11452 5.14468 5.18115 5.23037 5.24979 5.30185 5.44443 5.48393 5.52602 5.56428 5.62211 5.79838 5.92660 5.95740 6.14479 6.29987 6.38340 6.59165 6.64090 6.66594 6.89626 6.90966 7.28790 7.58606 7.77218 7.82332 8.19585 8.44596 8.88853 8.94742 9.49508 11.02824 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.003391 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.709266 B = 8255.046333 C = 9500.971487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.481 6.481 5 C -0.110 4.110 6 C 0.089 3.911 7 H 0.127 0.873 8 C 0.494 3.506 9 O -0.546 6.546 10 N -0.717 5.717 11 C 0.066 3.934 12 C 0.034 3.966 13 N -0.509 5.509 14 C 0.053 3.947 15 C -0.133 4.133 16 C 0.506 3.494 17 O -0.543 6.543 18 N -0.597 5.597 19 C 0.083 3.917 20 C 0.215 3.785 21 C -0.529 4.529 22 H 0.074 0.926 23 C 0.073 3.927 24 N -0.897 5.897 25 Si 0.876 3.124 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.266 1.266 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.401 0.599 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.029 0.971 47 H 0.036 0.964 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 13.585 17.321 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.366 6.366 5 C -0.148 4.148 6 C -0.023 4.023 7 H 0.145 0.855 8 C 0.279 3.721 9 O -0.422 6.422 10 N -0.370 5.370 11 C -0.060 4.060 12 C -0.094 4.094 13 N -0.232 5.232 14 C -0.075 4.075 15 C -0.174 4.174 16 C 0.292 3.708 17 O -0.421 6.421 18 N -0.329 5.329 19 C -0.061 4.061 20 C 0.095 3.905 21 C -0.568 4.568 22 H 0.092 0.908 23 C -0.130 4.130 24 N -0.535 5.535 25 Si 0.703 3.297 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.191 1.191 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.395 12.855 17.635 22.085 hybrid contribution 1.616 0.030 -0.954 1.877 sum 5.012 12.884 16.681 21.665 Atomic orbital electron populations 1.23254 0.76079 1.03716 1.02527 1.86498 1.23604 1.33404 1.84320 1.23183 0.91399 0.81644 0.73242 1.90696 1.66605 1.35786 1.43560 1.21395 0.89401 0.96230 1.07814 1.21628 0.88579 0.95485 0.96611 0.85533 1.21020 0.91532 0.79606 0.79959 1.90763 1.71745 1.41130 1.38595 1.45535 1.11103 1.39520 1.40859 1.22210 0.96431 0.94269 0.93064 1.22642 0.90450 0.91872 1.04453 1.62644 1.56871 1.02479 1.01241 1.22135 0.99744 0.97466 0.88125 1.21623 1.03748 0.99423 0.92594 1.20281 0.80149 0.86080 0.84245 1.90678 1.40785 1.25300 1.85347 1.47835 1.53055 1.23733 1.08273 1.21678 0.95724 0.85932 1.02806 1.19664 0.97831 0.90749 0.82288 1.21322 1.06912 1.15678 1.12880 0.90778 1.24858 0.95917 0.94814 0.97396 1.69897 1.32691 1.19836 1.31101 0.86849 0.83248 0.78980 0.80586 1.19913 1.21044 1.19117 0.91565 0.88176 0.92101 0.86536 0.85822 0.76266 0.89733 0.90631 0.89420 0.87707 0.93035 0.89413 0.88160 0.89528 0.93681 0.90567 0.91942 0.95274 0.94607 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.61 10.57 -39.24 -0.41 -5.03 16 3 C 0.46 5.96 7.36 36.01 0.26 6.22 16 4 O -0.48 -6.91 15.02 -18.74 -0.28 -7.19 16 5 C -0.11 -1.25 4.55 -27.88 -0.13 -1.38 16 6 C 0.09 0.95 2.00 -69.08 -0.14 0.81 16 7 H 0.13 1.25 8.03 -51.93 -0.42 0.84 16 8 C 0.49 5.65 6.79 -11.67 -0.08 5.57 16 9 O -0.55 -7.97 17.01 5.55 0.09 -7.87 16 10 N -0.72 -6.40 5.33 -61.07 -0.33 -6.72 16 11 C 0.07 0.45 6.43 -4.32 -0.03 0.43 16 12 C 0.03 0.25 5.53 -3.68 -0.02 0.23 16 13 N -0.51 -5.36 3.92 -228.06 -0.89 -6.25 16 14 C 0.05 0.68 2.95 -3.83 -0.01 0.67 16 15 C -0.13 -1.77 4.06 -27.89 -0.11 -1.88 16 16 C 0.51 9.73 7.67 -10.99 -0.08 9.64 16 17 O -0.54 -12.80 15.56 5.56 0.09 -12.71 16 18 N -0.60 -11.80 2.86 -182.95 -0.52 -12.32 16 19 C 0.08 1.19 10.24 59.85 0.61 1.80 16 20 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 21 C -0.53 -15.10 9.94 -34.44 -0.34 -15.45 16 22 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 23 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 24 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 25 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 29 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.12 1.43 6.07 -51.93 -0.31 1.11 16 33 H 0.12 1.26 7.73 -51.93 -0.40 0.86 16 34 H 0.40 3.20 8.84 -40.82 -0.36 2.84 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.61 6.84 -51.93 -0.36 0.25 16 37 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.10 0.64 6.66 -51.93 -0.35 0.29 16 39 H 0.05 0.70 5.77 -51.93 -0.30 0.40 16 40 H 0.09 1.34 5.50 -51.93 -0.29 1.05 16 41 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 42 H 0.09 0.86 6.53 -51.93 -0.34 0.52 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.17 8.07 -51.92 -0.42 0.75 16 45 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 46 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 47 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -37.72 383.21 -6.60 -44.32 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.10 Total: 2.75 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 0.88 Total: 15.28 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.97 Total: -52.07 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.52 Total: -32.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.72 -6.60 -44.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271481440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.175 kcal (2) G-P(sol) polarization free energy of solvation -37.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds