Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 110.99998 * 2 1 4 4 C 1.46902 * 111.00249 * 123.95046 * 2 1 3 5 5 H 1.08991 * 109.47249 * 288.92813 * 4 2 1 6 6 C 1.52995 * 109.47143 * 168.92279 * 4 2 1 7 7 N 1.46505 * 109.46923 * 68.81095 * 6 4 2 8 8 C 1.34776 * 119.99907 * 187.26871 * 7 6 4 9 9 O 1.21593 * 120.00419 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99896 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99950 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46904 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.46921 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99939 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00078 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99841 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00247 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47323 * 89.99711 * 17 15 13 19 19 H 1.48499 * 109.47427 * 209.99810 * 17 15 13 20 20 H 1.48504 * 109.46820 * 329.99846 * 17 15 13 21 21 C 1.50702 * 109.46642 * 48.92655 * 4 2 1 22 22 C 1.38422 * 120.02674 * 46.54388 * 21 4 2 23 23 F 1.35100 * 120.00923 * 359.97438 * 22 21 4 24 24 C 1.38472 * 119.97067 * 179.74484 * 22 21 4 25 25 C 1.38206 * 120.02998 * 0.53199 * 24 22 21 26 26 C 1.38203 * 120.04816 * 359.73803 * 25 24 22 27 27 C 1.38420 * 120.02360 * 226.81373 * 21 4 2 28 28 F 1.35100 * 120.01226 * 0.02562 * 27 21 4 29 29 H 1.09003 * 109.47482 * 53.90484 * 1 2 3 30 30 H 1.09005 * 109.47408 * 293.90923 * 1 2 3 31 31 H 1.08997 * 109.47475 * 173.91111 * 1 2 3 32 32 H 1.08991 * 109.46950 * 76.22723 * 3 2 1 33 33 H 1.09001 * 109.47226 * 196.23188 * 3 2 1 34 34 H 1.09004 * 109.46783 * 316.22641 * 3 2 1 35 35 H 1.08998 * 109.47453 * 188.81037 * 6 4 2 36 36 H 1.09000 * 109.47415 * 308.81610 * 6 4 2 37 37 H 0.97000 * 119.99967 * 7.27493 * 7 6 4 38 38 H 0.97000 * 119.99978 * 0.02562 * 10 8 7 39 39 H 1.08997 * 109.47069 * 299.99821 * 11 10 8 40 40 H 1.08995 * 109.47305 * 59.99982 * 11 10 8 41 41 H 1.08997 * 109.47065 * 299.99767 * 12 11 10 42 42 H 1.09004 * 109.47260 * 59.99691 * 12 11 10 43 43 H 0.96993 * 119.99732 * 180.02562 * 16 15 13 44 44 H 1.08005 * 119.98412 * 180.26762 * 24 22 21 45 45 H 1.08000 * 119.97701 * 179.72801 * 25 24 22 46 46 H 1.08002 * 119.98823 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.8145 -0.2158 2.0609 6 6 3.4998 -0.9784 0.9569 7 7 4.1946 0.3034 1.1006 8 6 5.5135 0.3882 0.8365 9 8 6.1267 -0.5989 0.4785 10 7 6.1529 1.5672 0.9691 11 6 7.5865 1.6595 0.6815 12 6 8.0609 3.0961 0.9095 13 6 9.5356 3.1910 0.6142 14 1 10.0801 2.3142 0.2961 15 6 10.1900 4.3969 0.7510 16 7 9.5269 5.4645 1.1388 17 14 12.0178 4.5147 0.3843 18 1 12.2145 4.8534 -1.0481 19 1 12.6254 5.5724 1.2311 20 1 12.6665 3.2116 0.6784 21 6 1.3039 -2.1032 1.2059 22 6 1.1513 -2.8634 0.0592 23 9 1.6218 -2.4066 -1.1219 24 6 0.5204 -4.0943 0.1242 25 6 0.0334 -4.5590 1.3313 26 6 0.1803 -3.7984 2.4758 27 6 0.8159 -2.5696 2.4143 28 9 0.9589 -1.8260 3.5331 29 1 -0.3634 0.6054 -0.8304 30 1 -0.3634 0.4165 0.9395 31 1 -0.3634 -1.0218 -0.1090 32 1 1.8972 1.7983 0.9980 33 1 3.0468 1.3571 -0.2873 34 1 1.4328 1.9766 -0.7110 35 1 3.8618 -1.6747 1.7133 36 1 3.6925 -1.3868 -0.0351 37 1 3.7055 1.0909 1.3859 38 1 5.6639 2.3546 1.2551 39 1 8.1337 0.9874 1.3424 40 1 7.7680 1.3768 -0.3554 41 1 7.5137 3.7686 0.2488 42 1 7.8794 3.3784 1.9466 43 1 9.9872 6.3129 1.2347 44 1 0.4050 -4.6896 -0.7696 45 1 -0.4624 -5.5172 1.3802 46 1 -0.2010 -4.1623 3.4184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273466945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = -99.360831 kcal Electronic energy + Delta-G solvation = -29861.794701 eV Core-core repulsion = 25422.177312 eV Total energy + Delta-G solvation = -4439.617389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09600 -49.84129 -41.31702 -40.26187 -38.64460 -36.65927 -35.41461 -34.80121 -33.25479 -31.56580 -31.25407 -29.50548 -28.39097 -26.77254 -25.11584 -24.16045 -23.72137 -22.91287 -22.16095 -21.61287 -19.47994 -19.04345 -18.49553 -18.43359 -17.66242 -17.08497 -16.99438 -16.81629 -16.54294 -16.48073 -16.31170 -16.12537 -15.82970 -15.69251 -15.32478 -15.17552 -15.14031 -14.97331 -14.28126 -14.13110 -13.87534 -13.68177 -13.34423 -13.23353 -13.21227 -12.99643 -12.92327 -12.70172 -12.62737 -12.51927 -12.40395 -12.22823 -12.16410 -11.68925 -11.51095 -11.23372 -10.60331 -10.36384 -9.95465 -9.75777 -9.71390 -9.41284 -8.23707 -6.33736 -0.08950 -0.00452 1.42012 1.42771 1.53962 1.68148 2.12483 2.35670 2.41656 2.71304 2.91226 3.11053 3.16157 3.44156 3.46801 3.69108 3.74394 3.88708 4.05667 4.16214 4.23974 4.35836 4.43421 4.48086 4.52304 4.55248 4.58191 4.75176 4.78341 4.86140 4.87067 4.92360 4.98992 5.02919 5.08688 5.22463 5.29545 5.35884 5.50674 5.59746 5.76750 5.78276 5.85875 5.93480 5.96244 6.17501 6.79150 7.05239 7.35298 7.54577 8.88210 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.002051 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.424362 B =13649.307852 C =13770.327432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.009 3.991 4 C 0.126 3.874 5 H 0.068 0.932 6 C 0.157 3.843 7 N -0.732 5.732 8 C 0.699 3.301 9 O -0.638 6.638 10 N -0.731 5.731 11 C 0.161 3.839 12 C 0.025 3.975 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.006 3.994 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.174 4.174 22 C 0.137 3.863 23 F -0.127 7.127 24 C -0.167 4.167 25 C -0.044 4.044 26 C -0.162 4.162 27 C 0.120 3.880 28 F -0.139 7.139 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.406 0.594 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.266 0.734 44 H 0.163 0.837 45 H 0.182 0.818 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.670 -18.154 1.810 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.139 4.139 4 C 0.017 3.983 5 H 0.086 0.914 6 C 0.033 3.967 7 N -0.391 5.391 8 C 0.399 3.601 9 O -0.520 6.520 10 N -0.386 5.386 11 C 0.037 3.963 12 C -0.013 4.013 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.176 4.176 22 C 0.117 3.883 23 F -0.106 7.106 24 C -0.186 4.186 25 C -0.062 4.062 26 C -0.180 4.180 27 C 0.100 3.900 28 F -0.118 7.118 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.242 0.758 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.180 0.820 45 H 0.200 0.800 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.904 -19.019 1.089 33.787 hybrid contribution 0.596 1.869 0.806 2.121 sum -27.307 -17.150 1.894 32.302 Atomic orbital electron populations 1.22442 0.86016 1.02507 1.01162 1.62034 1.08984 1.14513 1.41205 1.22781 1.01867 0.87867 1.01350 1.20500 0.92235 0.91667 0.93877 0.91444 1.21092 0.89313 0.84606 1.01734 1.45273 1.06876 1.13395 1.73574 1.16119 0.82102 0.83510 0.78390 1.90865 1.67485 1.37468 1.56147 1.45199 1.10778 1.10004 1.72621 1.21085 0.77949 0.98475 0.98837 1.19123 0.95550 0.90322 0.96293 1.21460 0.95051 0.95653 1.46264 0.92332 1.25875 1.03387 0.95291 0.94675 1.70058 1.38134 1.00652 1.47726 0.85435 0.79126 0.78086 0.78346 1.19747 1.20479 1.19114 1.19581 1.06651 0.98361 0.93048 1.17449 0.96879 0.93440 0.80501 1.91580 1.85925 1.88982 1.44080 1.21614 1.00754 0.94449 1.01776 1.21335 0.95117 1.00331 0.89384 1.21535 1.01522 0.92581 1.02383 1.17465 0.99947 0.91538 0.81032 1.91506 1.93906 1.76345 1.50013 0.90065 0.95071 0.91711 0.93920 0.91276 0.89833 0.92229 0.91950 0.75264 0.75830 0.93870 0.93825 0.97212 0.97275 0.92554 0.81951 0.80039 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.90 127.69 1.14 1.55 16 2 N -0.54 -10.72 3.68 -927.74 -3.42 -14.14 16 3 C 0.01 0.17 8.14 127.69 1.04 1.21 16 4 C 0.13 2.59 1.78 44.17 0.08 2.67 16 5 H 0.07 1.34 7.06 -2.39 -0.02 1.32 16 6 C 0.16 4.18 5.08 86.38 0.44 4.62 16 7 N -0.73 -20.17 3.77 -478.53 -1.80 -21.98 16 8 C 0.70 25.95 8.57 179.06 1.53 27.49 16 9 O -0.64 -29.41 16.32 -4.01 -0.07 -29.47 16 10 N -0.73 -26.92 5.56 -478.53 -2.66 -29.58 16 11 C 0.16 7.23 5.61 86.38 0.48 7.72 16 12 C 0.02 1.27 5.09 29.85 0.15 1.42 16 13 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.01 0.36 5.46 84.66 0.46 0.83 16 16 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 17 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C -0.17 -3.18 3.59 -19.78 -0.07 -3.25 16 22 C 0.14 2.41 5.59 22.37 0.13 2.53 16 23 F -0.13 -2.89 15.24 44.97 0.69 -2.20 16 24 C -0.17 -1.79 10.02 22.32 0.22 -1.56 16 25 C -0.04 -0.28 10.04 22.25 0.22 -0.06 16 26 C -0.16 -1.53 10.02 22.32 0.22 -1.31 16 27 C 0.12 1.90 7.25 22.37 0.16 2.06 16 28 F -0.14 -2.56 16.25 44.97 0.73 -1.83 16 29 H 0.08 1.12 7.95 -2.39 -0.02 1.11 16 30 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 1.03 5.90 -2.39 -0.01 1.01 16 32 H 0.04 0.65 7.37 -2.39 -0.02 0.63 16 33 H 0.07 1.53 5.97 -2.39 -0.01 1.51 16 34 H 0.08 1.32 7.86 -2.38 -0.02 1.30 16 35 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 36 H 0.06 1.96 7.61 -2.39 -0.02 1.94 16 37 H 0.41 8.89 5.97 -92.71 -0.55 8.34 16 38 H 0.41 12.62 8.49 -92.71 -0.79 11.83 16 39 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -73.54 382.44 1.91 -71.63 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.32 Total: 20.65 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.45 Total: 15.14 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -7.60 Total: -120.12 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.07 Total: -29.47 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 1.42 Total: -4.03 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.54 1.91 -71.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273466945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.733 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds