Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99695 * 2 1 4 4 C 1.46902 * 111.00174 * 123.95155 * 2 1 3 5 5 H 1.08995 * 109.46931 * 293.57529 * 4 2 1 6 6 C 1.53001 * 109.46609 * 53.57595 * 4 2 1 7 7 N 1.46502 * 109.46880 * 183.87367 * 6 4 2 8 8 C 1.34775 * 120.00050 * 185.23816 * 7 6 4 9 9 O 1.21589 * 119.99713 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00022 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99745 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46898 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47213 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00193 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99966 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00132 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46735 * 90.00333 * 17 15 13 19 19 H 1.48497 * 109.47266 * 210.00402 * 17 15 13 20 20 H 1.48498 * 109.47022 * 330.00591 * 17 15 13 21 21 C 1.50698 * 109.46846 * 173.56983 * 4 2 1 22 22 C 1.38413 * 120.03347 * 315.25723 * 21 4 2 23 23 F 1.35107 * 120.00723 * 359.97438 * 22 21 4 24 24 C 1.38469 * 119.98071 * 180.24971 * 22 21 4 25 25 C 1.38210 * 120.02285 * 359.48002 * 24 22 21 26 26 C 1.38207 * 120.04921 * 0.28914 * 25 24 22 27 27 C 1.38425 * 120.02006 * 135.00534 * 21 4 2 28 28 F 1.35097 * 120.01297 * 0.02562 * 27 21 4 29 29 H 1.08999 * 109.47447 * 289.45200 * 1 2 3 30 30 H 1.09003 * 109.46919 * 49.44834 * 1 2 3 31 31 H 1.08994 * 109.47125 * 169.45013 * 1 2 3 32 32 H 1.09002 * 109.47019 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47233 * 299.99950 * 3 2 1 34 34 H 1.09005 * 109.47240 * 60.00454 * 3 2 1 35 35 H 1.09002 * 109.47138 * 303.86889 * 6 4 2 36 36 H 1.08997 * 109.47780 * 63.87261 * 6 4 2 37 37 H 0.97003 * 119.99904 * 5.23506 * 7 6 4 38 38 H 0.97003 * 119.99932 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47358 * 299.99392 * 11 10 8 40 40 H 1.08997 * 109.47144 * 59.99741 * 11 10 8 41 41 H 1.08997 * 109.46879 * 300.00003 * 12 11 10 42 42 H 1.08997 * 109.47175 * 60.00077 * 12 11 10 43 43 H 0.96998 * 119.99900 * 179.97438 * 16 15 13 44 44 H 1.08001 * 119.99124 * 179.74619 * 24 22 21 45 45 H 1.07998 * 119.97564 * 180.27577 * 25 24 22 46 46 H 1.08004 * 119.98972 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.7420 -0.2563 2.0671 6 6 1.3786 -2.1661 1.1388 7 7 1.8319 -2.8983 2.3240 8 6 1.4998 -4.1948 2.4830 9 8 0.8236 -4.7566 1.6430 10 7 1.9164 -4.8683 3.5736 11 6 1.5549 -6.2774 3.7466 12 6 2.1500 -6.7994 5.0560 13 6 1.7777 -8.2488 5.2344 14 1 1.1771 -8.7478 4.4882 15 6 2.2046 -8.9380 6.3495 16 7 2.9363 -8.3305 7.2579 17 14 1.7425 -10.7344 6.5709 18 1 2.7817 -11.5931 5.9484 19 1 1.6458 -11.0458 8.0197 20 1 0.4326 -10.9923 5.9207 21 6 3.4936 -0.8772 1.0180 22 6 4.0696 -1.1941 -0.2001 23 9 3.2888 -1.4044 -1.2824 24 6 5.4460 -1.3011 -0.3076 25 6 6.2452 -1.0811 0.7983 26 6 5.6715 -0.7599 2.0140 27 6 4.2950 -0.6574 2.1250 28 9 3.7344 -0.3435 3.3135 29 1 -0.3634 0.3422 0.9690 30 1 -0.3633 0.6681 -0.7809 31 1 -0.3633 -1.0102 -0.1881 32 1 3.0850 1.3425 0.0005 33 1 1.6459 1.8948 -0.8900 34 1 1.6459 1.8948 0.8901 35 1 0.2918 -2.0843 1.1560 36 1 1.6886 -2.7006 0.2409 37 1 2.3710 -2.4500 2.9943 38 1 2.4555 -4.4200 4.2439 39 1 0.4696 -6.3731 3.7768 40 1 1.9479 -6.8584 2.9123 41 1 3.2353 -6.7038 5.0254 42 1 1.7574 -6.2185 5.8906 43 1 3.2363 -8.8153 8.0426 44 1 5.8954 -1.5524 -1.2570 45 1 7.3188 -1.1604 0.7125 46 1 6.2969 -0.5886 2.8776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273466947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = -108.583790 kcal Electronic energy + Delta-G solvation = -30193.101181 eV Core-core repulsion = 25753.083855 eV Total energy + Delta-G solvation = -4440.017326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.10676 -49.78971 -41.23419 -40.22833 -38.58816 -36.71365 -35.69354 -34.81048 -32.89131 -31.55235 -31.23886 -29.70634 -28.26413 -26.78591 -25.21888 -24.15596 -23.67218 -22.93323 -22.04855 -21.51851 -19.52403 -19.10198 -18.48100 -18.34704 -17.68666 -17.32650 -16.93485 -16.70459 -16.52924 -16.49608 -16.29121 -16.02108 -15.89762 -15.75315 -15.31266 -15.27129 -15.09770 -14.79975 -14.51290 -14.25447 -13.77233 -13.63694 -13.36411 -13.21656 -13.12109 -12.99973 -12.92419 -12.75083 -12.62554 -12.52051 -12.42277 -12.24899 -12.03905 -11.70683 -11.52525 -11.25634 -10.60587 -10.42430 -9.92405 -9.79803 -9.70598 -9.45308 -8.23541 -6.33826 -0.06364 0.01419 1.42185 1.43056 1.53767 1.60926 2.09374 2.36296 2.41442 2.75676 2.92260 3.11269 3.21810 3.37329 3.46502 3.66309 3.73994 3.89027 4.04277 4.22227 4.23911 4.39433 4.42620 4.48739 4.51785 4.57962 4.61000 4.72586 4.80872 4.85812 4.88755 4.94005 5.00722 5.03304 5.08449 5.23010 5.27778 5.32041 5.49614 5.59112 5.76302 5.78353 5.84272 5.91264 5.95577 6.17169 6.79071 7.01385 7.35371 7.51234 8.88485 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.002484 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.501709 B =11269.722560 C =12009.593272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.028 3.972 4 C 0.126 3.874 5 H 0.067 0.933 6 C 0.151 3.849 7 N -0.733 5.733 8 C 0.701 3.299 9 O -0.634 6.634 10 N -0.732 5.732 11 C 0.161 3.839 12 C 0.025 3.975 13 C -0.546 4.546 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.169 4.169 22 C 0.139 3.861 23 F -0.125 7.125 24 C -0.170 4.170 25 C -0.050 4.050 26 C -0.163 4.163 27 C 0.114 3.886 28 F -0.136 7.136 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.403 0.597 38 H 0.406 0.594 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.009 0.991 42 H 0.009 0.991 43 H 0.266 0.734 44 H 0.160 0.840 45 H 0.177 0.823 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 24.964 -14.325 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.120 4.120 4 C 0.017 3.983 5 H 0.085 0.915 6 C 0.026 3.974 7 N -0.390 5.390 8 C 0.401 3.599 9 O -0.516 6.516 10 N -0.387 5.387 11 C 0.036 3.964 12 C -0.013 4.013 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.171 4.171 22 C 0.119 3.881 23 F -0.103 7.103 24 C -0.189 4.189 25 C -0.068 4.068 26 C -0.182 4.182 27 C 0.095 3.905 28 F -0.115 7.115 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.239 0.761 38 H 0.241 0.759 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.178 0.822 45 H 0.195 0.805 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.845 24.213 -15.367 29.267 hybrid contribution -0.357 -0.177 1.705 1.751 sum 5.488 24.036 -13.662 28.187 Atomic orbital electron populations 1.22532 0.85684 1.03172 1.01517 1.61952 1.09224 1.14733 1.40537 1.22421 1.00486 0.87267 1.01807 1.20432 0.89604 0.93794 0.94449 0.91544 1.21151 0.98836 0.90203 0.87161 1.44845 1.58678 1.09440 1.26047 1.16051 0.80039 0.81625 0.82188 1.90866 1.45687 1.69489 1.45558 1.45225 1.57381 1.12868 1.23183 1.21106 0.98478 0.78410 0.98364 1.19121 0.95537 0.95384 0.91218 1.21458 1.33534 0.96841 1.06640 0.92283 1.25867 0.94733 1.03185 0.95345 1.70060 1.36871 1.38554 1.11118 0.85440 0.78988 0.79186 0.77412 1.19706 1.20473 1.19105 1.19727 0.95777 1.08454 0.93147 1.17390 0.89037 0.98974 0.82704 1.91556 1.74872 1.91661 1.52244 1.21602 0.90865 1.03894 1.02548 1.21292 1.02087 0.93620 0.89828 1.21528 0.92073 1.03423 1.01188 1.17427 0.91937 1.00981 0.80193 1.91506 1.85824 1.90315 1.43857 0.94717 0.89228 0.91504 0.91973 0.89478 0.94887 0.91014 0.92274 0.76147 0.75935 0.93710 0.93749 0.97279 0.97311 0.92529 0.82232 0.80542 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.86 127.69 1.13 1.42 16 2 N -0.54 -9.83 3.49 -927.73 -3.24 -13.06 16 3 C 0.03 0.40 9.32 127.69 1.19 1.59 16 4 C 0.13 2.56 1.56 44.17 0.07 2.63 16 5 H 0.07 1.32 7.27 -2.39 -0.02 1.30 16 6 C 0.15 3.93 4.73 86.38 0.41 4.34 16 7 N -0.73 -20.80 5.30 -478.52 -2.54 -23.33 16 8 C 0.70 26.24 8.57 179.05 1.53 27.77 16 9 O -0.63 -28.96 16.34 -4.00 -0.07 -29.02 16 10 N -0.73 -27.34 5.56 -478.54 -2.66 -30.00 16 11 C 0.16 7.22 5.61 86.38 0.48 7.70 16 12 C 0.02 1.28 5.09 29.85 0.15 1.43 16 13 C -0.55 -30.93 9.11 25.60 0.23 -30.69 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 17 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C -0.17 -3.30 3.23 -19.78 -0.06 -3.37 16 22 C 0.14 2.73 6.55 22.37 0.15 2.87 16 23 F -0.13 -2.92 15.31 44.97 0.69 -2.24 16 24 C -0.17 -2.40 10.02 22.32 0.22 -2.18 16 25 C -0.05 -0.53 10.04 22.26 0.22 -0.31 16 26 C -0.16 -2.13 10.02 22.32 0.22 -1.90 16 27 C 0.11 2.02 6.80 22.37 0.15 2.17 16 28 F -0.14 -2.58 15.75 44.97 0.71 -1.87 16 29 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 30 H 0.09 1.10 8.05 -2.39 -0.02 1.08 16 31 H 0.07 1.21 6.54 -2.39 -0.02 1.19 16 32 H 0.06 0.94 6.77 -2.39 -0.02 0.92 16 33 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.07 1.89 6.24 -2.39 -0.01 1.87 16 36 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 37 H 0.40 9.71 7.36 -92.71 -0.68 9.03 16 38 H 0.41 13.06 8.49 -92.71 -0.79 12.27 16 39 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 46 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -71.61 386.37 1.33 -70.28 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.45 Total: 23.21 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.57 Total: 14.37 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -8.15 Total: -120.70 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.07 Total: -29.02 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 1.40 Total: -4.10 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.61 1.33 -70.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273466947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.306 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds