Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 117.00129 * 2 1 4 4 O 1.20822 * 119.99789 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99887 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46887 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00245 * 269.99988 * 6 5 3 8 8 H 1.07997 * 120.00336 * 187.26141 * 7 6 5 9 9 C 1.38950 * 119.99931 * 7.25485 * 7 6 5 10 10 N 1.31408 * 120.00092 * 22.91236 * 9 7 6 11 11 Si 1.86794 * 120.00132 * 202.91564 * 9 7 6 12 12 H 1.48503 * 109.47610 * 90.00055 * 11 9 7 13 13 H 1.48502 * 109.47110 * 210.00089 * 11 9 7 14 14 H 1.48497 * 109.47243 * 329.99828 * 11 9 7 15 15 C 1.34780 * 120.00021 * 89.99669 * 6 5 3 16 16 O 1.21295 * 119.99858 * 4.14554 * 15 6 5 17 17 C 1.50698 * 119.99905 * 184.14279 * 15 6 5 18 18 H 1.08996 * 110.86060 * 34.79937 * 17 15 6 19 19 C 1.54633 * 110.97046 * 271.00409 * 17 15 6 20 20 C 1.51283 * 104.19582 * 217.05019 * 19 17 15 21 21 O 1.21282 * 124.93839 * 196.23526 * 20 19 17 22 22 N 1.34416 * 110.11668 * 16.25237 * 20 19 17 23 23 C 1.46498 * 124.34970 * 180.41022 * 22 20 19 24 24 C 1.52997 * 109.47206 * 90.02529 * 23 22 20 25 25 N 1.46905 * 109.46876 * 179.97438 * 24 23 22 26 26 C 1.46907 * 110.99795 * 169.99950 * 25 24 23 27 27 C 1.46893 * 111.00279 * 293.95055 * 25 24 23 28 28 C 1.46764 * 111.30304 * 0.67394 * 22 20 19 29 29 H 1.08992 * 109.46913 * 59.99801 * 1 2 3 30 30 H 1.08994 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46503 * 299.99921 * 1 2 3 32 32 H 1.08995 * 109.47177 * 59.99887 * 5 3 2 33 33 H 1.08997 * 109.47226 * 299.99399 * 5 3 2 34 34 H 0.96996 * 120.00509 * 184.28980 * 10 9 7 35 35 H 1.08994 * 110.48213 * 98.37258 * 19 17 15 36 36 H 1.09000 * 110.59708 * 335.78540 * 19 17 15 37 37 H 1.08999 * 109.47026 * 330.02614 * 23 22 20 38 38 H 1.09008 * 109.47168 * 210.02556 * 23 22 20 39 39 H 1.09000 * 109.47311 * 300.00046 * 24 23 22 40 40 H 1.08999 * 109.47058 * 60.00105 * 24 23 22 41 41 H 1.08996 * 109.46942 * 59.99819 * 26 25 24 42 42 H 1.09003 * 109.46803 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47112 * 300.00230 * 26 25 24 44 44 H 1.09008 * 109.46960 * 60.00323 * 27 25 24 45 45 H 1.09004 * 109.47166 * 179.97438 * 27 25 24 46 46 H 1.09002 * 109.47692 * 300.00400 * 27 25 24 47 47 H 1.09003 * 110.24590 * 101.71827 * 28 22 20 48 48 H 1.08995 * 110.25091 * 223.71903 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1757 3.3368 -1.1886 8 1 4.5935 4.3327 -1.1927 9 6 3.8349 2.7214 -2.3868 10 7 2.9464 1.7533 -2.3989 11 14 4.6399 3.2701 -3.9806 12 1 5.8737 2.4765 -4.2110 13 1 3.6979 3.0593 -5.1091 14 1 4.9879 4.7108 -3.8890 15 6 4.1733 3.3262 1.1659 16 8 4.0751 2.7257 2.2152 17 6 4.5093 4.7953 1.1671 18 1 4.0001 5.3106 0.3527 19 6 6.0382 5.0133 1.0897 20 6 6.2872 6.2131 1.9770 21 8 7.3003 6.8799 1.9753 22 7 5.2226 6.4323 2.7677 23 6 5.1273 7.5215 3.7427 24 6 4.5191 8.7547 3.0719 25 7 4.4230 9.8467 4.0499 26 6 4.0682 11.1120 3.3930 27 6 3.4640 9.5185 5.1130 28 6 4.1702 5.4365 2.5331 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9565 0.7806 0.8892 34 1 2.7541 1.2817 -3.2243 35 1 6.3416 5.2272 0.0649 36 1 6.5697 4.1409 1.4698 37 1 6.1227 7.7641 4.1148 38 1 4.4944 7.2107 4.5740 39 1 5.1519 9.0655 2.2407 40 1 3.5237 8.5121 2.6998 41 1 3.1054 11.0044 2.8935 42 1 4.0042 11.9035 4.1397 43 1 4.8321 11.3667 2.6585 44 1 3.7887 8.6149 5.6290 45 1 3.4127 10.3436 5.8235 46 1 2.4792 9.3533 4.6759 47 1 4.1822 4.6825 3.3202 48 1 3.1951 5.9214 2.4892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345541803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = -123.396710 kcal Electronic energy + Delta-G solvation = -31170.131672 eV Core-core repulsion = 26840.559525 eV Total energy + Delta-G solvation = -4329.572147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45568 -39.45471 -38.35952 -37.64588 -36.03385 -35.40582 -34.71964 -32.90208 -31.71458 -29.32835 -28.33477 -27.79079 -27.31342 -26.36232 -25.06148 -24.32440 -22.39921 -21.33871 -20.24106 -19.30811 -19.14631 -17.36649 -16.97948 -16.67274 -16.52334 -15.84425 -15.56510 -15.47516 -15.33672 -15.10784 -14.84390 -14.64150 -14.42747 -14.05693 -13.85201 -13.40865 -13.22987 -13.06355 -12.86594 -12.61724 -12.56276 -12.49743 -12.20044 -11.99378 -11.87233 -11.74797 -11.69634 -11.45989 -11.34925 -11.10693 -10.97894 -10.84916 -10.82705 -10.55247 -10.41480 -9.90114 -9.70371 -9.60314 -9.09480 -8.78671 -8.65236 -8.44432 -8.17950 -6.65708 -4.10089 2.80544 2.97845 3.05759 3.13700 3.15443 3.32707 3.60272 3.80438 3.91632 4.00080 4.38121 4.67238 4.77859 4.84627 4.92827 4.97027 5.09284 5.17177 5.33492 5.35467 5.38895 5.42761 5.44103 5.64195 5.65866 5.68244 5.71421 5.72957 5.80960 5.88398 5.90513 5.96860 6.01502 6.15136 6.20068 6.34249 6.44394 6.62072 6.64601 6.77395 6.83668 7.20332 7.29486 7.31648 7.45246 8.07084 8.40233 8.82109 9.00139 9.18391 9.57316 10.40306 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.003204 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.001201 B = 8737.154388 C = 9768.947845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.488 3.512 4 O -0.506 6.506 5 C 0.150 3.850 6 N -0.420 5.420 7 C -0.333 4.333 8 H 0.109 0.891 9 C 0.040 3.960 10 N -0.867 5.867 11 Si 0.924 3.076 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.268 1.268 15 C 0.474 3.526 16 O -0.600 6.600 17 C -0.100 4.100 18 H 0.110 0.890 19 C -0.136 4.136 20 C 0.522 3.478 21 O -0.539 6.539 22 N -0.619 5.619 23 C 0.132 3.868 24 C 0.038 3.962 25 N -0.546 5.546 26 C 0.026 3.974 27 C 0.018 3.982 28 C 0.116 3.884 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.275 0.725 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.093 0.907 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 6.246 6.558 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.330 3.670 4 O -0.391 6.391 5 C 0.025 3.975 6 N -0.137 5.137 7 C -0.460 4.460 8 H 0.126 0.874 9 C -0.165 4.165 10 N -0.505 5.505 11 Si 0.750 3.250 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.192 1.192 15 C 0.262 3.738 16 O -0.487 6.487 17 C -0.122 4.122 18 H 0.128 0.872 19 C -0.177 4.177 20 C 0.311 3.689 21 O -0.416 6.416 22 N -0.353 5.353 23 C 0.009 3.991 24 C -0.091 4.091 25 N -0.270 5.270 26 C -0.123 4.123 27 C -0.130 4.130 28 C -0.007 4.007 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.111 0.889 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.740 6.628 7.155 9.781 hybrid contribution -1.119 0.195 -1.549 1.920 sum -1.859 6.822 5.606 9.024 Atomic orbital electron populations 1.22937 0.78676 1.01873 1.01601 1.86460 1.21669 1.35377 1.85570 1.23915 0.92214 0.80562 0.70323 1.90509 1.66610 1.36413 1.45598 1.20692 0.87250 0.85344 1.04243 1.43433 1.56235 1.08561 1.05503 1.19749 1.41392 1.02675 0.82157 0.87383 1.25168 0.94562 0.97022 0.99752 1.69863 1.26810 1.24326 1.29489 0.85967 0.79009 0.79432 0.80619 1.19968 1.20995 1.19233 1.19499 0.82948 0.87848 0.83456 1.90547 1.58672 1.68096 1.31366 1.21975 0.96115 0.96015 0.98117 0.87174 1.22245 0.96188 0.97590 1.01641 1.21012 0.82230 0.85213 0.80463 1.90686 1.28768 1.52753 1.69427 1.48288 1.18413 1.29202 1.39389 1.21248 1.02780 0.84889 0.90193 1.22550 1.00193 0.91343 0.95061 1.61908 1.49061 1.03133 1.12887 1.22375 0.99454 0.91367 0.99066 1.22485 0.93528 1.02154 0.94809 1.22122 0.90176 0.90545 0.97878 0.92606 0.89565 0.93180 0.85204 0.89629 0.91459 0.87328 0.87534 0.89257 0.90446 0.90223 0.94293 0.95583 0.91302 0.91232 0.90990 0.91348 0.95452 0.88927 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.79 16 2 O -0.37 -7.69 10.57 -39.26 -0.41 -8.10 16 3 C 0.49 11.45 6.08 36.01 0.22 11.67 16 4 O -0.51 -13.25 16.03 -18.75 -0.30 -13.55 16 5 C 0.15 3.38 5.28 -5.19 -0.03 3.35 16 6 N -0.42 -9.66 2.11 -116.10 -0.25 -9.90 16 7 C -0.33 -7.65 9.12 -14.93 -0.14 -7.78 16 8 H 0.11 2.31 5.91 -52.49 -0.31 2.00 16 9 C 0.04 0.92 4.98 -17.47 -0.09 0.83 16 10 N -0.87 -20.93 8.92 55.50 0.49 -20.44 16 11 Si 0.92 18.23 29.61 -169.99 -5.03 13.20 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 15 C 0.47 10.30 6.76 -10.99 -0.07 10.22 16 16 O -0.60 -14.15 15.17 5.54 0.08 -14.07 16 17 C -0.10 -1.79 2.52 -90.04 -0.23 -2.02 16 18 H 0.11 1.98 6.84 -51.93 -0.36 1.62 16 19 C -0.14 -2.25 6.26 -26.74 -0.17 -2.42 16 20 C 0.52 8.95 8.02 -10.86 -0.09 8.86 16 21 O -0.54 -10.67 17.59 5.56 0.10 -10.57 16 22 N -0.62 -9.31 2.93 -172.30 -0.51 -9.82 16 23 C 0.13 1.68 5.86 -4.04 -0.02 1.66 16 24 C 0.04 0.45 5.28 -3.82 -0.02 0.43 16 25 N -0.55 -5.91 5.02 -251.25 -1.26 -7.17 16 26 C 0.03 0.24 9.57 60.07 0.57 0.81 16 27 C 0.02 0.17 9.32 60.06 0.56 0.72 16 28 C 0.12 1.82 6.84 -3.02 -0.02 1.80 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.13 2.92 6.13 -51.93 -0.32 2.61 16 33 H 0.09 1.82 7.37 -51.93 -0.38 1.43 16 34 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 35 H 0.11 1.71 7.93 -51.93 -0.41 1.29 16 36 H 0.11 1.78 7.89 -51.93 -0.41 1.37 16 37 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 38 H 0.08 0.86 6.55 -51.92 -0.34 0.52 16 39 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 40 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.07 0.61 6.47 -51.92 -0.34 0.28 16 45 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.09 1.57 6.88 -51.93 -0.36 1.21 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -30.53 393.30 -7.02 -37.54 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.41 Total: 7.02 kcal Atomic # 6 Polarization: 28.39 SS G_CDS: 1.55 Total: 29.94 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -1.52 Total: -47.33 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.53 Total: -46.29 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.53 -7.02 -37.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345541803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.855 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds