Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 117.00129 * 2 1 4 4 O 1.20822 * 119.99789 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99887 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46887 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00245 * 269.99988 * 6 5 3 8 8 H 1.07997 * 120.00336 * 187.26141 * 7 6 5 9 9 C 1.38950 * 119.99931 * 7.25485 * 7 6 5 10 10 N 1.31408 * 120.00092 * 22.91236 * 9 7 6 11 11 Si 1.86794 * 120.00132 * 202.91564 * 9 7 6 12 12 H 1.48503 * 109.47610 * 90.00055 * 11 9 7 13 13 H 1.48502 * 109.47110 * 210.00089 * 11 9 7 14 14 H 1.48497 * 109.47243 * 329.99828 * 11 9 7 15 15 C 1.34780 * 120.00021 * 89.99669 * 6 5 3 16 16 O 1.21295 * 119.99858 * 4.14554 * 15 6 5 17 17 C 1.50698 * 119.99905 * 184.14279 * 15 6 5 18 18 H 1.08996 * 110.86060 * 34.79937 * 17 15 6 19 19 C 1.54633 * 110.97046 * 271.00409 * 17 15 6 20 20 C 1.51283 * 104.19582 * 217.05019 * 19 17 15 21 21 O 1.21282 * 124.93839 * 196.23526 * 20 19 17 22 22 N 1.34416 * 110.11668 * 16.25237 * 20 19 17 23 23 C 1.46498 * 124.34970 * 180.41022 * 22 20 19 24 24 C 1.52997 * 109.47206 * 90.02529 * 23 22 20 25 25 N 1.46905 * 109.46876 * 179.97438 * 24 23 22 26 26 C 1.46907 * 110.99795 * 169.99950 * 25 24 23 27 27 C 1.46893 * 111.00279 * 293.95055 * 25 24 23 28 28 C 1.46764 * 111.30304 * 0.67394 * 22 20 19 29 29 H 1.08992 * 109.46913 * 59.99801 * 1 2 3 30 30 H 1.08994 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46503 * 299.99921 * 1 2 3 32 32 H 1.08995 * 109.47177 * 59.99887 * 5 3 2 33 33 H 1.08997 * 109.47226 * 299.99399 * 5 3 2 34 34 H 0.96996 * 120.00509 * 184.28980 * 10 9 7 35 35 H 1.08994 * 110.48213 * 98.37258 * 19 17 15 36 36 H 1.09000 * 110.59708 * 335.78540 * 19 17 15 37 37 H 1.08999 * 109.47026 * 330.02614 * 23 22 20 38 38 H 1.09008 * 109.47168 * 210.02556 * 23 22 20 39 39 H 1.09000 * 109.47311 * 300.00046 * 24 23 22 40 40 H 1.08999 * 109.47058 * 60.00105 * 24 23 22 41 41 H 1.08996 * 109.46942 * 59.99819 * 26 25 24 42 42 H 1.09003 * 109.46803 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47112 * 300.00230 * 26 25 24 44 44 H 1.09008 * 109.46960 * 60.00323 * 27 25 24 45 45 H 1.09004 * 109.47166 * 179.97438 * 27 25 24 46 46 H 1.09002 * 109.47692 * 300.00400 * 27 25 24 47 47 H 1.09003 * 110.24590 * 101.71827 * 28 22 20 48 48 H 1.08995 * 110.25091 * 223.71903 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1757 3.3368 -1.1886 8 1 4.5935 4.3327 -1.1927 9 6 3.8349 2.7214 -2.3868 10 7 2.9464 1.7533 -2.3989 11 14 4.6399 3.2701 -3.9806 12 1 5.8737 2.4765 -4.2110 13 1 3.6979 3.0593 -5.1091 14 1 4.9879 4.7108 -3.8890 15 6 4.1733 3.3262 1.1659 16 8 4.0751 2.7257 2.2152 17 6 4.5093 4.7953 1.1671 18 1 4.0001 5.3106 0.3527 19 6 6.0382 5.0133 1.0897 20 6 6.2872 6.2131 1.9770 21 8 7.3003 6.8799 1.9753 22 7 5.2226 6.4323 2.7677 23 6 5.1273 7.5215 3.7427 24 6 4.5191 8.7547 3.0719 25 7 4.4230 9.8467 4.0499 26 6 4.0682 11.1120 3.3930 27 6 3.4640 9.5185 5.1130 28 6 4.1702 5.4365 2.5331 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9565 0.7806 0.8892 34 1 2.7541 1.2817 -3.2243 35 1 6.3416 5.2272 0.0649 36 1 6.5697 4.1409 1.4698 37 1 6.1227 7.7641 4.1148 38 1 4.4944 7.2107 4.5740 39 1 5.1519 9.0655 2.2407 40 1 3.5237 8.5121 2.6998 41 1 3.1054 11.0044 2.8935 42 1 4.0042 11.9035 4.1397 43 1 4.8321 11.3667 2.6585 44 1 3.7887 8.6149 5.6290 45 1 3.4127 10.3436 5.8235 46 1 2.4792 9.3533 4.6759 47 1 4.1822 4.6825 3.3202 48 1 3.1951 5.9214 2.4892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345541803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = -142.719838 kcal Electronic energy + Delta-G solvation = -31170.969585 eV Core-core repulsion = 26840.559525 eV Total energy + Delta-G solvation = -4330.410061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89509 -41.14220 -39.99239 -38.56607 -37.55587 -37.01549 -36.50614 -34.16458 -33.46889 -30.73064 -29.68985 -28.69062 -28.49902 -27.85324 -26.72030 -25.39539 -23.83490 -22.26041 -21.92445 -21.00060 -20.45793 -18.97083 -18.52053 -18.42546 -17.86333 -17.22681 -17.13595 -16.84692 -16.67815 -16.23320 -16.05867 -16.01645 -15.86446 -15.42510 -15.35634 -14.74766 -14.52360 -14.29148 -14.25639 -14.15669 -13.93160 -13.76039 -13.42468 -13.31711 -13.15397 -12.91645 -12.82850 -12.65783 -12.57133 -12.51809 -12.44552 -12.36447 -12.16340 -12.04664 -11.89071 -11.55382 -11.50094 -11.05085 -10.88669 -10.45754 -9.96548 -9.81947 -9.38157 -8.40422 -5.89409 1.37449 1.47110 1.52985 1.61271 1.64908 1.79039 1.90276 2.17896 2.36112 2.77450 3.06586 3.10667 3.34632 3.58878 3.87045 3.93786 4.00390 4.02352 4.22835 4.27089 4.37775 4.38803 4.40559 4.43170 4.47569 4.53436 4.58497 4.60939 4.64492 4.68993 4.73489 4.78936 4.83262 4.88668 4.89352 4.97634 5.03114 5.05043 5.43738 5.47926 5.59702 5.72258 5.93355 5.97750 6.05429 6.30674 7.05636 7.06638 7.22316 7.45010 7.83494 8.65855 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.003204 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.001201 B = 8737.154388 C = 9768.947845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.490 3.510 4 O -0.541 6.541 5 C 0.147 3.853 6 N -0.432 5.432 7 C -0.345 4.345 8 H 0.121 0.879 9 C 0.002 3.998 10 N -0.892 5.892 11 Si 0.986 3.014 12 H -0.270 1.270 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.469 3.531 16 O -0.623 6.623 17 C -0.096 4.096 18 H 0.111 0.889 19 C -0.129 4.129 20 C 0.522 3.478 21 O -0.568 6.568 22 N -0.610 5.610 23 C 0.131 3.869 24 C 0.047 3.953 25 N -0.558 5.558 26 C 0.025 3.975 27 C 0.017 3.983 28 C 0.125 3.875 29 H 0.044 0.956 30 H 0.132 0.868 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.273 0.727 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.028 0.972 47 H 0.084 0.916 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 6.971 6.815 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.333 3.667 4 O -0.429 6.429 5 C 0.022 3.978 6 N -0.149 5.149 7 C -0.472 4.472 8 H 0.138 0.862 9 C -0.200 4.200 10 N -0.532 5.532 11 Si 0.810 3.190 12 H -0.195 1.195 13 H -0.220 1.220 14 H -0.184 1.184 15 C 0.259 3.741 16 O -0.511 6.511 17 C -0.117 4.117 18 H 0.129 0.871 19 C -0.169 4.169 20 C 0.311 3.689 21 O -0.448 6.448 22 N -0.343 5.343 23 C 0.009 3.991 24 C -0.083 4.083 25 N -0.282 5.282 26 C -0.123 4.123 27 C -0.130 4.130 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.069 7.348 7.434 10.507 hybrid contribution -1.113 -0.090 -1.555 1.914 sum -2.182 7.258 5.879 9.591 Atomic orbital electron populations 1.23286 0.76234 1.04801 1.01219 1.86431 1.24045 1.33847 1.84931 1.24043 0.92546 0.80760 0.69364 1.90475 1.67399 1.37601 1.47424 1.20721 0.87117 0.85704 1.04288 1.43642 1.56433 1.08770 1.06016 1.20112 1.41383 1.03354 0.82308 0.86162 1.25922 0.94697 0.97152 1.02251 1.69946 1.27825 1.25431 1.29951 0.85018 0.77815 0.79366 0.76787 1.19505 1.21952 1.18433 1.20091 0.82064 0.89191 0.82796 1.90523 1.59502 1.69041 1.32011 1.21887 0.97002 0.93437 0.99413 0.87100 1.22194 0.95123 0.97385 1.02231 1.21020 0.82195 0.84999 0.80667 1.90672 1.29921 1.53724 1.70461 1.48303 1.17541 1.29327 1.39105 1.21396 1.02848 0.84569 0.90253 1.22368 0.99633 0.91446 0.94828 1.61920 1.50162 1.03165 1.12978 1.22421 0.99333 0.91065 0.99487 1.22550 0.93073 1.02976 0.94451 1.22014 0.91028 0.90470 0.96275 0.93665 0.84998 0.92919 0.85528 0.88972 0.91646 0.86395 0.87718 0.90205 0.88275 0.91981 0.94210 0.95402 0.89673 0.91661 0.90664 0.89898 0.95324 0.89836 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 10.56 113.37 1.20 2.41 16 2 O -0.38 -15.30 10.57 -51.41 -0.54 -15.84 16 3 C 0.49 23.09 6.08 71.24 0.43 23.53 16 4 O -0.54 -28.57 16.03 21.98 0.35 -28.21 16 5 C 0.15 6.69 5.28 85.63 0.45 7.14 16 6 N -0.43 -19.85 2.11 -639.61 -1.35 -21.21 16 7 C -0.35 -15.69 9.12 84.04 0.77 -14.93 16 8 H 0.12 5.03 5.91 -2.91 -0.02 5.01 16 9 C 0.00 0.08 4.98 84.93 0.42 0.50 16 10 N -0.89 -43.23 8.92 21.66 0.19 -43.03 16 11 Si 0.99 36.88 29.61 68.60 2.03 38.91 16 12 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 13 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 15 C 0.47 20.29 6.76 87.66 0.59 20.88 16 16 O -0.62 -29.36 15.17 -3.08 -0.05 -29.41 16 17 C -0.10 -3.33 2.52 -10.42 -0.03 -3.36 16 18 H 0.11 3.87 6.84 -2.39 -0.02 3.86 16 19 C -0.13 -4.16 6.26 30.59 0.19 -3.96 16 20 C 0.52 17.49 8.02 87.90 0.70 18.20 16 21 O -0.57 -22.25 17.59 -3.03 -0.05 -22.31 16 22 N -0.61 -17.63 2.93 -817.61 -2.40 -20.03 16 23 C 0.13 3.17 5.86 86.38 0.51 3.67 16 24 C 0.05 1.07 5.28 86.30 0.46 1.52 16 25 N -0.56 -11.15 5.02 -948.82 -4.76 -15.91 16 26 C 0.02 0.42 9.57 127.69 1.22 1.64 16 27 C 0.02 0.27 9.32 127.69 1.19 1.46 16 28 C 0.13 3.77 6.84 86.90 0.59 4.36 16 29 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 30 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 32 H 0.13 5.79 6.13 -2.39 -0.01 5.77 16 33 H 0.09 3.96 7.37 -2.39 -0.02 3.94 16 34 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 35 H 0.12 3.57 7.93 -2.39 -0.02 3.55 16 36 H 0.10 3.44 7.89 -2.39 -0.02 3.42 16 37 H 0.08 2.13 7.92 -2.39 -0.02 2.11 16 38 H 0.10 1.98 6.55 -2.38 -0.02 1.96 16 39 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 40 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 41 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 43 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 44 H 0.07 1.11 6.47 -2.38 -0.02 1.09 16 45 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 46 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.08 2.74 6.88 -2.39 -0.02 2.73 16 48 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -64.92 393.30 3.09 -61.83 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.97 Total: 32.13 kcal Atomic # 6 Polarization: 54.37 SS G_CDS: 8.70 Total: 63.07 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -8.32 Total: -100.18 kcal Atomic # 8 Polarization: -95.48 SS G_CDS: -0.29 Total: -95.77 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -64.92 3.09 -61.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345541803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.889 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds