Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34231 * 116.99521 * 2 1 4 4 O 1.20815 * 120.00277 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99414 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46878 * 181.24415 * 5 3 2 7 7 C 1.37099 * 119.99868 * 95.75846 * 6 5 3 8 8 H 1.08002 * 119.99532 * 217.39482 * 7 6 5 9 9 C 1.38947 * 119.99879 * 37.38911 * 7 6 5 10 10 N 1.31412 * 119.99829 * 212.34194 * 9 7 6 11 11 Si 1.86791 * 120.00017 * 32.35488 * 9 7 6 12 12 H 1.48499 * 109.47677 * 95.29808 * 11 9 7 13 13 H 1.48503 * 109.47147 * 215.30218 * 11 9 7 14 14 H 1.48505 * 109.47049 * 335.29484 * 11 9 7 15 15 C 1.34771 * 120.00008 * 275.75916 * 6 5 3 16 16 O 1.21294 * 120.00165 * 359.97438 * 15 6 5 17 17 C 1.50697 * 120.00385 * 180.02562 * 15 6 5 18 18 H 1.09003 * 110.85876 * 300.70151 * 17 15 6 19 19 C 1.54630 * 110.96807 * 64.48513 * 17 15 6 20 20 C 1.51346 * 104.16518 * 142.89703 * 19 17 15 21 21 O 1.21279 * 124.92783 * 163.73911 * 20 19 17 22 22 N 1.34418 * 110.12889 * 343.79698 * 20 19 17 23 23 C 1.46504 * 124.34710 * 179.54347 * 22 20 19 24 24 C 1.52997 * 109.46763 * 270.02245 * 23 22 20 25 25 N 1.46908 * 109.47162 * 179.97438 * 24 23 22 26 26 C 1.46902 * 110.99840 * 66.04545 * 25 24 23 27 27 C 1.46894 * 111.00102 * 190.00173 * 25 24 23 28 28 C 1.46757 * 111.30264 * 359.56581 * 22 20 19 29 29 H 1.09001 * 109.47209 * 59.99694 * 1 2 3 30 30 H 1.08997 * 109.46496 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46590 * 299.99916 * 1 2 3 32 32 H 1.09002 * 109.46656 * 61.24881 * 5 3 2 33 33 H 1.08994 * 109.46913 * 301.24633 * 5 3 2 34 34 H 0.96997 * 119.99702 * 180.02562 * 10 9 7 35 35 H 1.09000 * 110.48915 * 261.59980 * 19 17 15 36 36 H 1.08998 * 110.48680 * 24.24471 * 19 17 15 37 37 H 1.09002 * 109.47439 * 30.02266 * 23 22 20 38 38 H 1.09001 * 109.47089 * 150.02749 * 23 22 20 39 39 H 1.08997 * 109.47855 * 300.00098 * 24 23 22 40 40 H 1.08999 * 109.47389 * 60.00579 * 24 23 22 41 41 H 1.09003 * 109.47056 * 60.00121 * 26 25 24 42 42 H 1.08995 * 109.47182 * 180.02562 * 26 25 24 43 43 H 1.09005 * 109.47371 * 300.00617 * 26 25 24 44 44 H 1.09000 * 109.47292 * 60.00369 * 27 25 24 45 45 H 1.09000 * 109.46913 * 180.02562 * 27 25 24 46 46 H 1.08998 * 109.47314 * 299.99812 * 27 25 24 47 47 H 1.09008 * 110.24577 * 258.01738 * 28 22 20 48 48 H 1.08999 * 110.25088 * 136.01937 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6795 0.0295 7 6 4.2922 3.2771 1.2238 8 1 4.0187 4.3070 1.3993 9 6 4.9585 2.5576 2.2081 10 7 4.7246 2.8078 3.4768 11 14 6.1870 1.2349 1.7281 12 1 7.5569 1.8082 1.7274 13 1 6.1184 0.1178 2.7042 14 1 5.8623 0.7268 0.3710 15 6 4.0588 3.3842 -1.1167 16 8 3.7846 2.8554 -2.1733 17 6 4.4866 4.8288 -1.0859 18 1 3.8123 5.4201 -0.4663 19 6 5.9475 4.9629 -0.5974 20 6 6.5150 6.0910 -1.4317 21 8 7.5338 6.6979 -1.1778 22 7 5.7250 6.3231 -2.4942 23 6 5.9777 7.3558 -3.5022 24 6 5.3002 8.6600 -3.0769 25 7 5.5540 9.6958 -4.0873 26 6 4.9006 9.3613 -5.3598 27 6 5.1258 11.0162 -3.6067 28 6 4.5767 5.4095 -2.5145 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 3.9547 0.8004 -0.9018 33 1 3.9574 0.7614 0.8777 34 1 5.1900 2.3058 4.1640 35 1 5.9737 5.2203 0.4615 36 1 6.4972 4.0396 -0.7802 37 1 7.0516 7.5177 -3.5953 38 1 5.5743 7.0331 -4.4620 39 1 4.2263 8.4982 -2.9839 40 1 5.7035 8.9828 -2.1171 41 1 3.8246 9.2799 -5.2053 42 1 5.1050 10.1442 -6.0900 43 1 5.2875 8.4112 -5.7283 44 1 5.6765 11.2693 -2.7008 45 1 5.3246 11.7642 -4.3742 46 1 4.0580 10.9948 -3.3888 47 1 4.7433 4.6101 -3.2367 48 1 3.6649 5.9549 -2.7582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345541807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = -141.344704 kcal Electronic energy + Delta-G solvation = -31153.582544 eV Core-core repulsion = 26823.232113 eV Total energy + Delta-G solvation = -4330.350430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00733 -41.41053 -40.17213 -38.55477 -37.66086 -37.16510 -36.69558 -34.16142 -34.03165 -30.86457 -29.71441 -28.67051 -28.48778 -27.90519 -26.92633 -25.39646 -23.84450 -22.31837 -22.23812 -20.91538 -20.41339 -19.14834 -18.93251 -18.41968 -17.95927 -17.47425 -17.17149 -16.94905 -16.88564 -16.60229 -16.22176 -15.95297 -15.71129 -15.61090 -15.28439 -14.72159 -14.61937 -14.53707 -14.37766 -14.26579 -14.09942 -13.91556 -13.72681 -13.31385 -13.27406 -12.95756 -12.93241 -12.79436 -12.65655 -12.57188 -12.55084 -12.38249 -12.26509 -11.92072 -11.90119 -11.78189 -11.56701 -11.14146 -10.99893 -10.52396 -9.88774 -9.80524 -9.36531 -8.58098 -6.11156 1.17975 1.30430 1.36247 1.45889 1.47596 1.52143 1.85825 1.94749 2.19867 2.52093 2.89852 3.08331 3.36607 3.54136 3.85900 3.88476 3.98829 4.00102 4.03175 4.09303 4.23889 4.28524 4.32469 4.33213 4.40128 4.46514 4.48729 4.56367 4.60665 4.66021 4.67033 4.70491 4.80517 4.90255 4.98207 5.00639 5.02595 5.06193 5.24186 5.34719 5.49271 5.94955 5.98583 6.03097 6.07011 6.16805 6.76433 6.90914 7.08256 7.28995 7.64169 8.55551 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.003287 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.040607 B = 8515.569836 C = 9853.805141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.525 6.525 5 C 0.114 3.886 6 N -0.448 5.448 7 C -0.355 4.355 8 H 0.084 0.916 9 C 0.045 3.955 10 N -0.870 5.870 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.272 1.272 14 H -0.236 1.236 15 C 0.500 3.500 16 O -0.600 6.600 17 C -0.091 4.091 18 H 0.110 0.890 19 C -0.121 4.121 20 C 0.519 3.481 21 O -0.570 6.570 22 N -0.611 5.611 23 C 0.132 3.868 24 C 0.046 3.954 25 N -0.559 5.559 26 C 0.018 3.982 27 C 0.025 3.975 28 C 0.127 3.873 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.282 0.718 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.028 0.972 47 H 0.088 0.912 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 3.319 -12.303 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.292 3.708 4 O -0.414 6.414 5 C -0.011 4.011 6 N -0.168 5.168 7 C -0.482 4.482 8 H 0.101 0.899 9 C -0.163 4.163 10 N -0.504 5.504 11 Si 0.715 3.285 12 H -0.199 1.199 13 H -0.197 1.197 14 H -0.160 1.160 15 C 0.290 3.710 16 O -0.486 6.486 17 C -0.113 4.113 18 H 0.128 0.872 19 C -0.162 4.162 20 C 0.308 3.692 21 O -0.450 6.450 22 N -0.344 5.344 23 C 0.010 3.990 24 C -0.083 4.083 25 N -0.283 5.283 26 C -0.130 4.130 27 C -0.123 4.123 28 C 0.004 3.996 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.047 0.953 47 H 0.106 0.894 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.701 -12.614 13.392 hybrid contribution -0.651 -0.412 0.923 1.202 sum -3.205 3.289 -11.691 12.561 Atomic orbital electron populations 1.23531 0.75035 1.05745 1.02129 1.86495 1.25019 1.32598 1.84113 1.24792 0.93095 0.81537 0.71342 1.90584 1.67375 1.37532 1.45862 1.21518 0.86695 0.87267 1.05644 1.43314 1.57749 1.09000 1.06747 1.18740 1.39586 0.99606 0.90251 0.89879 1.25793 0.97304 0.99117 0.94053 1.69993 1.37411 1.41862 1.01100 0.86650 0.81216 0.79904 0.80768 1.19920 1.19685 1.15951 1.20316 0.79113 0.89011 0.82549 1.90549 1.55007 1.72265 1.30732 1.21756 0.97735 0.93763 0.98035 0.87153 1.22092 0.94490 0.98040 1.01567 1.21150 0.82642 0.83743 0.81651 1.90664 1.25975 1.54686 1.73643 1.48331 1.25891 1.34706 1.25480 1.21399 1.01591 0.85417 0.90595 1.22373 0.98669 0.91931 0.95354 1.61911 1.59378 1.02644 1.04392 1.22550 0.96586 1.03003 0.90866 1.22413 0.98397 0.89985 1.01501 1.21998 0.88975 0.92766 0.95864 0.92237 0.84331 0.92616 0.85758 0.87060 0.90772 0.87404 0.88207 0.90439 0.87864 0.93942 0.92349 0.95174 0.89997 0.90563 0.91865 0.89682 0.95311 0.89350 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -12.25 10.57 -51.43 -0.54 -12.79 16 3 C 0.45 18.30 7.99 71.24 0.57 18.87 16 4 O -0.53 -24.42 16.02 22.00 0.35 -24.07 16 5 C 0.11 4.57 4.10 85.64 0.35 4.92 16 6 N -0.45 -19.52 1.70 -639.59 -1.09 -20.61 16 7 C -0.36 -16.85 7.64 84.04 0.64 -16.21 16 8 H 0.08 4.26 7.14 -2.91 -0.02 4.24 16 9 C 0.05 2.16 5.03 84.93 0.43 2.59 16 10 N -0.87 -44.81 13.96 21.66 0.30 -44.50 16 11 Si 0.89 35.85 26.27 68.60 1.80 37.65 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.24 -8.73 5.83 99.48 0.58 -8.15 16 15 C 0.50 20.52 6.72 87.66 0.59 21.11 16 16 O -0.60 -25.92 15.21 -3.07 -0.05 -25.97 16 17 C -0.09 -3.17 2.64 -10.48 -0.03 -3.20 16 18 H 0.11 3.83 7.67 -2.39 -0.02 3.81 16 19 C -0.12 -4.32 5.35 30.61 0.16 -4.15 16 20 C 0.52 18.34 8.02 87.92 0.71 19.04 16 21 O -0.57 -23.77 17.59 -3.03 -0.05 -23.83 16 22 N -0.61 -17.60 2.93 -817.91 -2.40 -20.00 16 23 C 0.13 3.14 5.86 86.38 0.51 3.64 16 24 C 0.05 1.05 5.28 86.30 0.46 1.51 16 25 N -0.56 -11.08 5.02 -948.84 -4.76 -15.85 16 26 C 0.02 0.26 9.32 127.69 1.19 1.45 16 27 C 0.03 0.42 9.57 127.69 1.22 1.64 16 28 C 0.13 3.59 6.69 86.83 0.58 4.17 16 29 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 30 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.12 4.55 7.59 -2.39 -0.02 4.53 16 33 H 0.11 4.33 4.58 -2.39 -0.01 4.32 16 34 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 35 H 0.11 4.09 7.61 -2.39 -0.02 4.07 16 36 H 0.10 3.60 7.89 -2.39 -0.02 3.58 16 37 H 0.08 2.08 7.92 -2.39 -0.02 2.06 16 38 H 0.10 1.93 6.55 -2.39 -0.02 1.92 16 39 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 40 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 41 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 43 H 0.08 1.05 6.47 -2.38 -0.02 1.04 16 44 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 45 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 46 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.09 2.62 7.01 -2.38 -0.02 2.60 16 48 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -65.27 392.20 2.97 -62.29 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.84 Total: 30.35 kcal Atomic # 6 Polarization: 48.74 SS G_CDS: 8.57 Total: 57.31 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -7.95 Total: -100.96 kcal Atomic # 8 Polarization: -86.36 SS G_CDS: -0.29 Total: -86.65 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 1.80 Total: 37.65 kcal Total: -65.27 2.97 -62.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345541807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.050 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds