Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 7 7 N 1.46499 * 109.47323 * 300.00687 * 6 5 3 8 8 C 1.34771 * 120.00197 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99752 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00218 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00104 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47225 * 179.97438 * 11 10 8 13 13 O 1.21290 * 119.99880 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00137 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00086 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00101 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00002 * 179.97438 * 15 14 12 18 18 N 1.31414 * 119.99982 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00260 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47076 * 89.99489 * 19 17 15 21 21 H 1.48492 * 109.47117 * 209.99879 * 19 17 15 22 22 H 1.48500 * 109.46929 * 330.00015 * 19 17 15 23 23 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 24 24 C 1.53000 * 109.46948 * 299.99638 * 23 5 3 25 25 C 1.53011 * 109.47183 * 300.00114 * 24 23 5 26 26 C 1.52997 * 109.46779 * 60.00053 * 25 24 23 27 27 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46828 * 60.00529 * 6 5 3 32 32 H 1.09003 * 109.47167 * 180.02562 * 6 5 3 33 33 H 0.97001 * 119.99863 * 359.97438 * 7 6 5 34 34 H 0.97001 * 119.99843 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47131 * 299.99513 * 11 10 8 36 36 H 1.08998 * 109.47313 * 59.99860 * 11 10 8 37 37 H 0.97003 * 120.00035 * 0.02562 * 14 12 11 38 38 H 0.97001 * 119.99905 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.47452 * 60.00035 * 23 5 3 40 40 H 1.09003 * 109.46969 * 179.97438 * 23 5 3 41 41 H 1.08999 * 109.47513 * 180.02562 * 24 23 5 42 42 H 1.08999 * 109.47407 * 59.99681 * 24 23 5 43 43 H 1.08994 * 109.47054 * 300.00061 * 25 24 23 44 44 H 1.08994 * 109.46991 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47245 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47646 * 59.99659 * 26 25 24 47 47 H 1.09003 * 109.47345 * 179.97438 * 27 5 3 48 48 H 1.09004 * 109.47066 * 299.99799 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1084 0.5780 -1.2558 7 7 3.6931 -0.8269 -1.2503 8 6 4.0581 -1.6414 -2.2601 9 8 4.7318 -1.2102 -3.1758 10 7 3.6764 -2.9340 -2.2548 11 6 4.0728 -3.8192 -3.3527 12 6 3.5227 -5.2007 -3.1077 13 8 2.8647 -5.4239 -2.1135 14 7 3.7627 -6.1884 -3.9928 15 6 3.2626 -7.4453 -3.7696 16 1 2.6761 -7.6439 -2.8848 17 6 3.5096 -8.4634 -4.6823 18 7 3.0299 -9.6680 -4.4687 19 14 4.5236 -8.1198 -6.2132 20 1 5.9583 -8.3696 -5.9229 21 1 4.0781 -9.0130 -7.3127 22 1 4.3403 -6.7037 -6.6207 23 6 4.1183 0.5848 1.2427 24 6 3.5762 1.2817 2.4922 25 6 4.0100 2.7490 2.4865 26 6 3.4579 3.4391 1.2376 27 6 4.0000 2.7422 -0.0119 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.7151 1.0697 -2.1455 32 1 5.1970 0.6347 -1.2600 33 1 3.1559 -1.1710 -0.5196 34 1 3.1393 -3.2781 -1.5241 35 1 3.6782 -3.4321 -4.2922 36 1 5.1604 -3.8661 -3.4072 37 1 4.2898 -6.0102 -4.7873 38 1 3.2027 -10.3789 -5.1057 39 1 3.8094 -0.4605 1.2467 40 1 5.2068 0.6415 1.2380 41 1 3.9698 0.7903 3.3820 42 1 2.4877 1.2247 2.4967 43 1 5.0984 2.8061 2.4821 44 1 3.6234 3.2456 3.3765 45 1 3.7673 4.4843 1.2333 46 1 2.3694 3.3820 1.2420 47 1 5.0885 2.7993 -0.0159 48 1 3.6067 3.2339 -0.9017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345951373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = -160.942273 kcal Electronic energy + Delta-G solvation = -30626.587983 eV Core-core repulsion = 26295.387738 eV Total energy + Delta-G solvation = -4331.200245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65816 -39.82252 -38.66102 -38.29114 -36.66977 -35.08062 -34.43525 -33.70547 -31.90388 -31.72360 -31.19943 -28.12944 -27.93899 -25.85785 -24.21944 -23.67768 -23.12987 -21.29205 -20.65572 -19.99011 -19.63222 -18.85079 -18.23975 -17.44410 -16.96221 -16.57154 -16.12383 -15.73746 -15.58970 -15.26481 -14.97998 -14.63260 -14.59495 -14.46665 -14.33746 -14.05646 -13.80781 -13.52050 -13.14154 -13.04027 -12.78017 -12.59033 -12.55968 -12.47051 -12.29850 -12.15807 -12.10756 -11.99187 -11.50360 -11.30667 -11.22988 -10.99187 -10.64064 -10.63635 -10.54104 -10.26864 -10.10935 -10.05347 -9.69201 -9.22007 -8.75765 -8.66559 -8.29858 -6.40450 -3.92962 1.86100 2.33358 2.73997 3.00270 3.04940 3.13056 3.34689 3.58810 4.00332 4.04057 4.09394 4.14852 4.36965 4.51441 4.63533 4.66804 4.75583 4.83608 4.87511 4.94439 4.98654 5.07262 5.14705 5.19246 5.28244 5.31077 5.41292 5.44747 5.53507 5.62033 5.68661 5.70174 5.74698 5.81437 5.84422 5.86727 5.87247 5.93531 6.25994 6.42933 6.66294 7.05589 7.42707 7.45713 8.00849 8.19710 8.45024 8.74716 8.82238 9.30460 9.64346 10.71714 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002177 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.765809 B =12859.503014 C =13249.892755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.499 6.499 5 C -0.059 4.059 6 C 0.152 3.848 7 N -0.746 5.746 8 C 0.707 3.293 9 O -0.600 6.600 10 N -0.724 5.724 11 C 0.126 3.874 12 C 0.439 3.561 13 O -0.579 6.579 14 N -0.577 5.577 15 C -0.309 4.309 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.096 4.096 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.403 0.597 34 H 0.408 0.592 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.374 0.626 38 H 0.275 0.725 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 24.961 11.313 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.386 6.386 5 C -0.061 4.061 6 C 0.027 3.973 7 N -0.405 5.405 8 C 0.407 3.593 9 O -0.479 6.479 10 N -0.381 5.381 11 C -0.002 4.002 12 C 0.225 3.775 13 O -0.463 6.463 14 N -0.215 5.215 15 C -0.438 4.438 16 H 0.139 0.861 17 C -0.160 4.160 18 N -0.514 5.514 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.171 4.171 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.241 0.759 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.452 25.218 11.051 27.571 hybrid contribution -0.021 -0.269 -0.680 0.732 sum 1.431 24.949 10.371 27.057 Atomic orbital electron populations 1.23323 0.75794 1.04254 1.02412 1.86423 1.23827 1.33235 1.83722 1.23531 0.91463 0.81494 0.71823 1.90599 1.66976 1.36078 1.44985 1.21002 0.87532 0.99388 0.98153 1.21125 1.00468 0.80428 0.95271 1.45126 1.59214 1.09931 1.26232 1.15785 0.80204 0.80908 0.82448 1.90903 1.44237 1.75761 1.37028 1.44722 1.58071 1.08014 1.27337 1.20799 1.00440 0.88924 0.90080 1.19669 0.86228 0.85794 0.85813 1.90532 1.43722 1.82670 1.29402 1.42120 1.48060 1.10023 1.21279 1.19432 1.31422 0.82982 1.09947 0.86102 1.25068 0.97562 0.95078 0.98247 1.69620 1.43835 1.01185 1.36761 0.86669 0.81016 0.78757 0.83050 1.19395 1.20022 1.19190 1.21678 1.01825 0.99588 0.91664 1.21601 1.00707 0.96055 0.97789 1.21580 1.00929 0.95199 0.98170 1.21800 1.03047 0.98957 0.93310 1.21428 1.01406 0.90582 0.99930 0.91920 0.91820 0.87614 0.91044 0.89712 0.75937 0.75438 0.89931 0.89865 0.79232 0.91409 0.90349 0.89625 0.90999 0.92377 0.91725 0.91915 0.91615 0.89500 0.89985 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.43 8.08 -39.26 -0.32 -3.75 16 3 C 0.47 4.74 5.03 36.00 0.18 4.92 16 4 O -0.50 -5.91 13.41 -18.76 -0.25 -6.16 16 5 C -0.06 -0.48 0.51 -155.66 -0.08 -0.56 16 6 C 0.15 1.49 4.55 -4.04 -0.02 1.47 16 7 N -0.75 -8.63 4.76 -65.22 -0.31 -8.94 16 8 C 0.71 10.90 8.57 -86.93 -0.74 10.16 16 9 O -0.60 -11.08 16.34 5.29 0.09 -11.00 16 10 N -0.72 -11.56 5.53 -66.42 -0.37 -11.93 16 11 C 0.13 2.19 6.15 -5.19 -0.03 2.16 16 12 C 0.44 9.56 7.85 -10.99 -0.09 9.48 16 13 O -0.58 -14.42 15.24 5.55 0.08 -14.34 16 14 N -0.58 -13.33 5.09 -10.96 -0.06 -13.39 16 15 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 16 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 17 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 18 N -0.87 -24.88 13.96 55.50 0.77 -24.11 16 19 Si 0.88 18.94 27.74 -169.99 -4.71 14.23 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.26 6.52 56.52 0.37 -4.90 16 23 C -0.11 -0.76 4.50 -26.73 -0.12 -0.88 16 24 C -0.12 -0.82 5.70 -26.73 -0.15 -0.97 16 25 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 26 C -0.13 -0.96 5.63 -26.73 -0.15 -1.11 16 27 C -0.10 -0.68 4.37 -26.73 -0.12 -0.80 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.18 5.35 -40.82 -0.22 3.96 16 34 H 0.41 6.41 7.45 -40.82 -0.30 6.10 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 38 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.57 6.84 -51.93 -0.36 0.21 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 7.22 -51.93 -0.37 0.08 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.81 5.52 -51.93 -0.29 0.53 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -33.69 383.65 -7.19 -40.89 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -7.25 Total: 15.93 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -0.66 Total: 16.78 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.04 Total: -58.36 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.40 Total: -35.24 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.69 -7.19 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345951373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.053 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds