Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 7 7 N 1.46499 * 109.47323 * 300.00687 * 6 5 3 8 8 C 1.34771 * 120.00197 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99752 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00218 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00104 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47225 * 179.97438 * 11 10 8 13 13 O 1.21290 * 119.99880 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00137 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00086 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00101 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00002 * 179.97438 * 15 14 12 18 18 N 1.31414 * 119.99982 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00260 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47076 * 89.99489 * 19 17 15 21 21 H 1.48492 * 109.47117 * 209.99879 * 19 17 15 22 22 H 1.48500 * 109.46929 * 330.00015 * 19 17 15 23 23 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 24 24 C 1.53000 * 109.46948 * 299.99638 * 23 5 3 25 25 C 1.53011 * 109.47183 * 300.00114 * 24 23 5 26 26 C 1.52997 * 109.46779 * 60.00053 * 25 24 23 27 27 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46828 * 60.00529 * 6 5 3 32 32 H 1.09003 * 109.47167 * 180.02562 * 6 5 3 33 33 H 0.97001 * 119.99863 * 359.97438 * 7 6 5 34 34 H 0.97001 * 119.99843 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47131 * 299.99513 * 11 10 8 36 36 H 1.08998 * 109.47313 * 59.99860 * 11 10 8 37 37 H 0.97003 * 120.00035 * 0.02562 * 14 12 11 38 38 H 0.97001 * 119.99905 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.47452 * 60.00035 * 23 5 3 40 40 H 1.09003 * 109.46969 * 179.97438 * 23 5 3 41 41 H 1.08999 * 109.47513 * 180.02562 * 24 23 5 42 42 H 1.08999 * 109.47407 * 59.99681 * 24 23 5 43 43 H 1.08994 * 109.47054 * 300.00061 * 25 24 23 44 44 H 1.08994 * 109.46991 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47245 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47646 * 59.99659 * 26 25 24 47 47 H 1.09003 * 109.47345 * 179.97438 * 27 5 3 48 48 H 1.09004 * 109.47066 * 299.99799 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1084 0.5780 -1.2558 7 7 3.6931 -0.8269 -1.2503 8 6 4.0581 -1.6414 -2.2601 9 8 4.7318 -1.2102 -3.1758 10 7 3.6764 -2.9340 -2.2548 11 6 4.0728 -3.8192 -3.3527 12 6 3.5227 -5.2007 -3.1077 13 8 2.8647 -5.4239 -2.1135 14 7 3.7627 -6.1884 -3.9928 15 6 3.2626 -7.4453 -3.7696 16 1 2.6761 -7.6439 -2.8848 17 6 3.5096 -8.4634 -4.6823 18 7 3.0299 -9.6680 -4.4687 19 14 4.5236 -8.1198 -6.2132 20 1 5.9583 -8.3696 -5.9229 21 1 4.0781 -9.0130 -7.3127 22 1 4.3403 -6.7037 -6.6207 23 6 4.1183 0.5848 1.2427 24 6 3.5762 1.2817 2.4922 25 6 4.0100 2.7490 2.4865 26 6 3.4579 3.4391 1.2376 27 6 4.0000 2.7422 -0.0119 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.7151 1.0697 -2.1455 32 1 5.1970 0.6347 -1.2600 33 1 3.1559 -1.1710 -0.5196 34 1 3.1393 -3.2781 -1.5241 35 1 3.6782 -3.4321 -4.2922 36 1 5.1604 -3.8661 -3.4072 37 1 4.2898 -6.0102 -4.7873 38 1 3.2027 -10.3789 -5.1057 39 1 3.8094 -0.4605 1.2467 40 1 5.2068 0.6415 1.2380 41 1 3.9698 0.7903 3.3820 42 1 2.4877 1.2247 2.4967 43 1 5.0984 2.8061 2.4821 44 1 3.6234 3.2456 3.3765 45 1 3.7673 4.4843 1.2333 46 1 2.3694 3.3820 1.2420 47 1 5.0885 2.7993 -0.0159 48 1 3.6067 3.2339 -0.9017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345951373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = -185.500317 kcal Electronic energy + Delta-G solvation = -30627.652899 eV Core-core repulsion = 26295.387738 eV Total energy + Delta-G solvation = -4332.265162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40996 -41.10432 -40.11545 -39.22624 -37.49398 -36.30088 -35.88502 -35.24447 -33.81181 -32.63532 -31.75746 -29.43065 -28.75023 -26.94515 -25.78770 -24.45024 -23.73647 -22.03772 -21.69963 -21.43171 -20.68941 -20.54017 -19.60002 -18.27909 -17.77628 -17.62016 -17.37132 -16.93258 -16.87499 -16.65679 -16.10371 -15.86072 -15.72814 -15.28863 -15.15386 -15.11531 -14.87237 -14.73696 -14.29387 -14.26024 -14.00835 -13.94621 -13.50394 -13.37744 -13.14626 -13.14136 -12.95394 -12.87788 -12.79229 -12.42688 -12.07072 -11.98796 -11.92772 -11.72194 -11.55769 -11.42529 -11.18359 -11.08788 -10.94364 -10.62097 -10.40329 -10.29654 -9.80168 -8.43651 -6.05330 1.08236 1.32988 1.35810 1.45232 1.56449 1.68935 1.81796 2.15139 2.22238 2.80817 3.12875 3.23208 3.38468 3.53576 3.58163 3.86937 4.02896 4.10116 4.18908 4.24428 4.27688 4.29806 4.43278 4.44374 4.48202 4.53119 4.57004 4.66163 4.68747 4.69679 4.87959 4.99695 5.09376 5.18574 5.19622 5.27983 5.32461 5.33352 5.35487 5.44958 5.51448 5.64016 5.90566 5.96060 6.51169 6.65423 6.80575 7.03523 7.31139 7.54783 7.80967 8.72714 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002177 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.765809 B =12859.503014 C =13249.892755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.470 3.530 4 O -0.521 6.521 5 C -0.051 4.051 6 C 0.151 3.849 7 N -0.731 5.731 8 C 0.708 3.292 9 O -0.628 6.628 10 N -0.727 5.727 11 C 0.138 3.862 12 C 0.447 3.553 13 O -0.613 6.613 14 N -0.579 5.579 15 C -0.329 4.329 16 H 0.064 0.936 17 C -0.009 4.009 18 N -0.927 5.927 19 Si 0.958 3.042 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.232 1.232 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.133 4.133 27 C -0.095 4.095 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.410 0.590 34 H 0.409 0.591 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.392 0.608 38 H 0.281 0.719 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 26.838 10.528 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.314 3.686 4 O -0.410 6.410 5 C -0.052 4.052 6 C 0.027 3.973 7 N -0.390 5.390 8 C 0.408 3.592 9 O -0.510 6.510 10 N -0.384 5.384 11 C 0.010 3.990 12 C 0.234 3.766 13 O -0.499 6.499 14 N -0.219 5.219 15 C -0.458 4.458 16 H 0.082 0.918 17 C -0.209 4.209 18 N -0.567 5.567 19 Si 0.778 3.222 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.156 1.156 23 C -0.146 4.146 24 C -0.160 4.160 25 C -0.156 4.156 26 C -0.170 4.170 27 C -0.133 4.133 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.249 0.751 34 H 0.247 0.753 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.123 0.877 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.605 27.132 10.303 29.245 hybrid contribution -0.811 -0.811 -0.288 1.183 sum 2.793 26.321 10.015 28.300 Atomic orbital electron populations 1.23476 0.75085 1.05320 1.02414 1.86411 1.24677 1.33236 1.83547 1.23986 0.92283 0.81203 0.71112 1.90597 1.67637 1.36742 1.46018 1.21023 0.86080 1.00113 0.97994 1.21253 1.01201 0.79151 0.95679 1.45075 1.58373 1.10259 1.25279 1.15831 0.79942 0.80701 0.82743 1.90885 1.45626 1.76160 1.38303 1.44693 1.58339 1.08277 1.27099 1.20697 1.01337 0.85838 0.91153 1.20517 0.84459 0.87142 0.84473 1.90523 1.44854 1.83708 1.30810 1.41925 1.48727 1.08802 1.22448 1.19021 1.32317 0.85516 1.08968 0.91808 1.26064 0.98550 0.94183 1.02106 1.69783 1.45637 1.02619 1.38612 0.85449 0.78996 0.80457 0.77255 1.18060 1.19978 1.15569 1.21716 1.02770 0.99148 0.90976 1.21593 0.99699 0.96598 0.98130 1.21575 1.01784 0.94600 0.97629 1.21756 1.01520 0.99760 0.93951 1.21479 1.02729 0.89561 0.99530 0.91404 0.92391 0.86047 0.92067 0.88449 0.75133 0.75344 0.88207 0.87804 0.77233 0.90981 0.90734 0.87892 0.89862 0.94043 0.90171 0.91681 0.90695 0.91970 0.87694 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.36 -6.83 8.08 -51.41 -0.42 -7.24 16 3 C 0.47 9.19 5.03 71.23 0.36 9.55 16 4 O -0.52 -12.42 13.41 21.94 0.29 -12.12 16 5 C -0.05 -0.74 0.51 -52.93 -0.03 -0.77 16 6 C 0.15 2.70 4.55 86.38 0.39 3.09 16 7 N -0.73 -15.71 4.76 -478.53 -2.28 -17.99 16 8 C 0.71 20.48 8.57 179.06 1.53 22.01 16 9 O -0.63 -21.81 16.34 -3.99 -0.07 -21.87 16 10 N -0.73 -21.96 5.53 -482.31 -2.67 -24.63 16 11 C 0.14 4.47 6.15 85.63 0.53 4.99 16 12 C 0.45 19.13 7.85 87.66 0.69 19.82 16 13 O -0.61 -30.99 15.24 -3.06 -0.05 -31.04 16 14 N -0.58 -26.27 5.09 -306.99 -1.56 -27.83 16 15 C -0.33 -18.50 10.16 84.04 0.85 -17.65 16 16 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 17 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 18 N -0.93 -54.16 13.96 21.66 0.30 -53.86 16 19 Si 0.96 37.84 27.74 68.60 1.90 39.74 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 23 C -0.11 -1.27 4.50 30.59 0.14 -1.13 16 24 C -0.12 -1.42 5.70 30.60 0.17 -1.24 16 25 C -0.12 -1.22 5.92 30.60 0.18 -1.04 16 26 C -0.13 -1.73 5.63 30.59 0.17 -1.56 16 27 C -0.10 -1.19 4.37 30.59 0.13 -1.06 16 28 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 30 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 7.91 5.35 -92.71 -0.50 7.41 16 34 H 0.41 12.42 7.45 -92.71 -0.69 11.73 16 35 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.39 14.92 5.76 -92.71 -0.53 14.39 16 38 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.07 0.94 6.84 -2.39 -0.02 0.93 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.04 0.62 7.22 -2.39 -0.02 0.60 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 1.15 5.52 -2.39 -0.01 1.14 16 47 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 0.96 8.10 -2.38 -0.02 0.94 16 Total: -1.00 -75.73 383.65 1.48 -74.24 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: -0.77 Total: 45.94 kcal Atomic # 6 Polarization: 29.86 SS G_CDS: 6.79 Total: 36.65 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -6.21 Total: -124.30 kcal Atomic # 8 Polarization: -72.04 SS G_CDS: -0.23 Total: -72.27 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Total: -75.73 1.48 -74.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345951373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.259 kcal (2) G-P(sol) polarization free energy of solvation -75.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds