Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99679 * 2 1 4 4 O 1.20832 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99863 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47276 * 179.97438 * 5 3 2 7 7 C 1.37096 * 120.00243 * 275.17376 * 6 5 3 8 8 H 1.08006 * 119.99870 * 34.49688 * 7 6 5 9 9 C 1.38949 * 120.00564 * 214.50250 * 7 6 5 10 10 N 1.31418 * 119.99672 * 22.12335 * 9 7 6 11 11 Si 1.86796 * 120.00320 * 202.12655 * 9 7 6 12 12 H 1.48501 * 109.47349 * 89.99755 * 11 9 7 13 13 H 1.48503 * 109.47015 * 209.99547 * 11 9 7 14 14 H 1.48499 * 109.47370 * 329.99791 * 11 9 7 15 15 C 1.34781 * 120.00317 * 95.17254 * 6 5 3 16 16 O 1.21292 * 120.00177 * 184.53034 * 15 6 5 17 17 C 1.50705 * 119.99706 * 4.52572 * 15 6 5 18 18 C 1.53036 * 109.46014 * 194.36772 * 17 15 6 19 19 C 1.53195 * 109.31196 * 178.63290 * 18 17 15 20 20 N 1.46924 * 108.77489 * 54.63228 * 19 18 17 21 21 C 1.34780 * 120.62468 * 126.37129 * 20 19 18 22 22 O 1.21582 * 120.00433 * 349.04519 * 21 20 19 23 23 N 1.34783 * 119.99736 * 168.77444 * 21 20 19 24 24 C 1.46491 * 120.00270 * 163.52236 * 23 21 20 25 25 C 1.46505 * 119.99584 * 343.52198 * 23 21 20 26 26 C 1.46922 * 118.74205 * 306.64267 * 20 19 18 27 27 C 1.52760 * 109.00471 * 53.31277 * 26 20 19 28 28 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47334 * 300.00157 * 1 2 3 30 30 H 1.09004 * 109.46792 * 60.00518 * 1 2 3 31 31 H 1.09000 * 109.47607 * 59.99338 * 5 3 2 32 32 H 1.09006 * 109.47179 * 299.99566 * 5 3 2 33 33 H 0.96996 * 119.99765 * 184.97545 * 10 9 7 34 34 H 1.08997 * 109.46379 * 314.34503 * 17 15 6 35 35 H 1.08995 * 109.49654 * 58.67540 * 18 17 15 36 36 H 1.09002 * 109.52157 * 298.59559 * 18 17 15 37 37 H 1.08997 * 109.58299 * 294.84476 * 19 18 17 38 38 H 1.08997 * 109.69935 * 174.49221 * 19 18 17 39 39 H 1.09006 * 109.47231 * 59.99758 * 24 23 21 40 40 H 1.09000 * 109.47490 * 179.97438 * 24 23 21 41 41 H 1.08999 * 109.47596 * 299.99819 * 24 23 21 42 42 H 1.09003 * 109.46826 * 95.65370 * 25 23 21 43 43 H 1.08998 * 109.47089 * 215.65195 * 25 23 21 44 44 H 1.08995 * 109.47643 * 335.65635 * 25 23 21 45 45 H 1.09002 * 109.58818 * 173.14369 * 26 20 19 46 46 H 1.08999 * 109.59012 * 293.57330 * 26 20 19 47 47 H 1.09001 * 109.56306 * 185.55276 * 27 26 20 48 48 H 1.08996 * 109.36803 * 65.50344 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.0729 3.3673 -1.1837 8 1 3.3801 3.1572 -1.9853 9 6 5.0566 4.3342 -1.3513 10 7 6.1389 4.3063 -0.6064 11 14 4.8406 5.6738 -2.6351 12 1 4.1499 6.8379 -2.0244 13 1 6.1723 6.0964 -3.1383 14 1 4.0279 5.1520 -3.7631 15 6 4.2740 3.2966 1.1611 16 8 4.5380 4.4804 1.1698 17 6 4.2729 2.5153 2.4498 18 6 4.2767 3.4848 3.6339 19 6 4.2411 2.6877 4.9416 20 7 5.3553 1.7300 4.9421 21 6 6.2304 1.6955 5.9667 22 8 6.2266 2.5811 6.7996 23 7 7.1061 0.6762 6.0708 24 6 8.2757 0.8016 6.9438 25 6 6.8881 -0.5573 5.3109 26 6 5.5011 0.8150 3.8020 27 6 5.5195 1.6294 2.5097 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 6.7916 5.0207 -0.6724 34 1 3.3809 1.8905 2.4950 35 1 3.4009 4.1311 3.5776 36 1 5.1805 4.0935 3.6034 37 1 3.2963 2.1491 5.0155 38 1 4.3420 3.3664 5.7885 39 1 7.9473 0.9724 7.9691 40 1 8.8629 -0.1156 6.8988 41 1 8.8873 1.6413 6.6136 42 1 7.4587 -0.5179 4.3830 43 1 7.2159 -1.4116 5.9031 44 1 5.8276 -0.6599 5.0811 45 1 6.4345 0.2600 3.8958 46 1 4.6612 0.1205 3.7810 47 1 5.5280 0.9550 1.6534 48 1 6.4117 2.2550 2.4894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348802439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = -75.511222 kcal Electronic energy + Delta-G solvation = -32206.014020 eV Core-core repulsion = 27878.518343 eV Total energy + Delta-G solvation = -4327.495676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73742 -40.03542 -38.71053 -36.80900 -35.97092 -35.83670 -34.12227 -32.79586 -31.57656 -31.01721 -28.55197 -28.23180 -27.13492 -26.39528 -25.15385 -23.61465 -23.00734 -21.22135 -20.63316 -19.84031 -18.73908 -17.23342 -17.08633 -16.90283 -16.46581 -16.31578 -16.19691 -15.93691 -15.39276 -14.78801 -14.47217 -14.45958 -14.02646 -13.89329 -13.81219 -13.72328 -13.28511 -13.09003 -12.94896 -12.84461 -12.57176 -12.39000 -12.28862 -12.08037 -11.77236 -11.57546 -11.41032 -11.27679 -10.98550 -10.83282 -10.75846 -10.58763 -10.47966 -10.27826 -10.19792 -10.14751 -9.99611 -9.81219 -8.94928 -8.85602 -8.34498 -8.05875 -7.20604 -6.12892 -3.83058 2.60353 2.72678 3.01550 3.14370 3.35373 3.42738 3.46530 3.72889 4.17494 4.38274 4.66924 4.80879 4.90902 5.05344 5.12178 5.17100 5.20546 5.24711 5.26207 5.31116 5.36599 5.39898 5.41770 5.49074 5.53658 5.58852 5.64364 5.67523 5.70264 5.74682 5.90183 5.96022 6.00332 6.08981 6.26471 6.28967 6.39557 6.58851 6.72332 6.74677 6.82321 6.95267 7.60097 7.87518 8.14514 8.29626 8.58428 8.97322 9.10902 9.60517 10.21854 10.94946 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.004049 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.189175 B = 6914.256080 C = 8523.351629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.430 3.570 4 O -0.486 6.486 5 C 0.114 3.886 6 N -0.439 5.439 7 C -0.344 4.344 8 H 0.078 0.922 9 C 0.071 3.929 10 N -0.822 5.822 11 Si 0.907 3.093 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.482 3.518 16 O -0.514 6.514 17 C -0.101 4.101 18 C -0.108 4.108 19 C 0.130 3.870 20 N -0.621 5.621 21 C 0.711 3.289 22 O -0.588 6.588 23 N -0.645 5.645 24 C 0.110 3.890 25 C 0.073 3.927 26 C 0.070 3.930 27 C -0.123 4.123 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -16.029 8.893 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.288 6.288 3 C 0.269 3.731 4 O -0.370 6.370 5 C -0.013 4.013 6 N -0.162 5.162 7 C -0.470 4.470 8 H 0.096 0.904 9 C -0.139 4.139 10 N -0.457 5.457 11 Si 0.734 3.266 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.200 1.200 15 C 0.269 3.731 16 O -0.389 6.389 17 C -0.123 4.123 18 C -0.147 4.147 19 C 0.007 3.993 20 N -0.358 5.358 21 C 0.414 3.586 22 O -0.466 6.466 23 N -0.384 5.384 24 C -0.033 4.033 25 C -0.069 4.069 26 C -0.052 4.052 27 C -0.162 4.162 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.134 0.866 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.679 -14.520 9.366 17.292 hybrid contribution -0.459 0.589 -0.854 1.135 sum -1.138 -13.930 8.511 16.364 Atomic orbital electron populations 1.23123 0.77740 1.02787 1.02218 1.86533 1.22486 1.34777 1.84983 1.25475 0.93740 0.81086 0.72752 1.90680 1.66725 1.36250 1.43387 1.21119 0.85682 0.89495 1.05049 1.43063 1.61079 1.05704 1.06316 1.18976 1.13729 1.21996 0.92307 0.90406 1.24944 0.92944 0.98897 0.97163 1.69913 1.06696 1.30377 1.38668 0.86287 0.77167 0.82554 0.80577 1.20471 1.21428 1.19978 1.19648 0.82637 0.87649 0.83131 1.90530 1.47825 1.15607 1.84982 1.21237 0.97965 0.97494 0.95636 1.21647 1.04065 0.97299 0.91677 1.21576 0.87077 0.91190 0.99468 1.47283 1.30020 1.39112 1.19399 1.15858 0.78909 0.81957 0.81878 1.90883 1.72831 1.39598 1.43293 1.46818 1.27106 1.15144 1.49374 1.21435 0.86105 1.01742 0.94030 1.22343 1.02717 0.86154 0.95688 1.22958 1.03847 0.92618 0.85776 1.21873 0.99068 0.98735 0.96486 0.88766 0.92413 0.92318 0.87191 0.87945 0.92577 0.91333 0.90641 0.90458 0.92127 0.89065 0.92246 0.90870 0.92556 0.91756 0.91720 0.89837 0.86630 0.91709 0.90251 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.48 10.57 -39.26 -0.41 -5.90 16 3 C 0.43 7.86 8.00 36.00 0.29 8.14 16 4 O -0.49 -10.84 16.08 -18.75 -0.30 -11.14 16 5 C 0.11 2.06 5.46 -5.20 -0.03 2.03 16 6 N -0.44 -10.55 2.10 -116.09 -0.24 -10.79 16 7 C -0.34 -9.37 9.22 -14.93 -0.14 -9.51 16 8 H 0.08 2.11 7.92 -52.48 -0.42 1.70 16 9 C 0.07 1.99 4.28 -17.47 -0.07 1.91 16 10 N -0.82 -23.78 11.25 55.50 0.62 -23.16 16 11 Si 0.91 22.27 29.61 -169.99 -5.03 17.23 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.48 11.80 6.12 -10.98 -0.07 11.73 16 16 O -0.51 -15.02 13.24 5.55 0.07 -14.95 16 17 C -0.10 -1.85 1.63 -91.73 -0.15 -2.00 16 18 C -0.11 -1.95 4.73 -26.61 -0.13 -2.08 16 19 C 0.13 1.95 6.45 -3.71 -0.02 1.93 16 20 N -0.62 -8.91 2.94 -178.77 -0.53 -9.44 16 21 C 0.71 11.04 7.96 -86.91 -0.69 10.35 16 22 O -0.59 -11.31 15.87 5.29 0.08 -11.22 16 23 N -0.65 -7.51 3.25 -214.79 -0.70 -8.21 16 24 C 0.11 1.06 10.23 59.84 0.61 1.68 16 25 C 0.07 0.56 8.46 59.85 0.51 1.06 16 26 C 0.07 0.82 4.44 -3.94 -0.02 0.80 16 27 C -0.12 -1.90 4.99 -26.83 -0.13 -2.04 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.11 1.82 8.08 -51.93 -0.42 1.40 16 32 H 0.10 1.51 4.49 -51.93 -0.23 1.27 16 33 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 34 H 0.07 1.14 7.25 -51.93 -0.38 0.77 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.61 7.99 -51.93 -0.42 1.20 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 39 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.43 6.65 -51.93 -0.35 0.09 16 43 H 0.06 0.35 8.04 -51.93 -0.42 -0.06 16 44 H 0.08 0.62 5.40 -51.93 -0.28 0.34 16 45 H 0.12 1.11 3.11 -74.88 -0.23 0.88 16 46 H 0.06 0.62 7.78 -51.93 -0.40 0.22 16 47 H 0.08 1.13 6.21 -51.93 -0.32 0.81 16 48 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -38.36 379.94 -6.84 -45.20 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.15 Total: 1.17 kcal Atomic # 6 Polarization: 24.46 SS G_CDS: 1.02 Total: 25.48 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.84 Total: -51.60 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.56 Total: -43.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.36 -6.84 -45.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348802439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.310 kcal (2) G-P(sol) polarization free energy of solvation -38.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds