Wall clock time and date at job start Sat Apr 11 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99679 * 2 1 4 4 O 1.20832 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99863 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47276 * 179.97438 * 5 3 2 7 7 C 1.37096 * 120.00243 * 275.17376 * 6 5 3 8 8 H 1.08006 * 119.99870 * 34.49688 * 7 6 5 9 9 C 1.38949 * 120.00564 * 214.50250 * 7 6 5 10 10 N 1.31418 * 119.99672 * 22.12335 * 9 7 6 11 11 Si 1.86796 * 120.00320 * 202.12655 * 9 7 6 12 12 H 1.48501 * 109.47349 * 89.99755 * 11 9 7 13 13 H 1.48503 * 109.47015 * 209.99547 * 11 9 7 14 14 H 1.48499 * 109.47370 * 329.99791 * 11 9 7 15 15 C 1.34781 * 120.00317 * 95.17254 * 6 5 3 16 16 O 1.21292 * 120.00177 * 184.53034 * 15 6 5 17 17 C 1.50705 * 119.99706 * 4.52572 * 15 6 5 18 18 C 1.53036 * 109.46014 * 194.36772 * 17 15 6 19 19 C 1.53195 * 109.31196 * 178.63290 * 18 17 15 20 20 N 1.46924 * 108.77489 * 54.63228 * 19 18 17 21 21 C 1.34780 * 120.62468 * 126.37129 * 20 19 18 22 22 O 1.21582 * 120.00433 * 349.04519 * 21 20 19 23 23 N 1.34783 * 119.99736 * 168.77444 * 21 20 19 24 24 C 1.46491 * 120.00270 * 163.52236 * 23 21 20 25 25 C 1.46505 * 119.99584 * 343.52198 * 23 21 20 26 26 C 1.46922 * 118.74205 * 306.64267 * 20 19 18 27 27 C 1.52760 * 109.00471 * 53.31277 * 26 20 19 28 28 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47334 * 300.00157 * 1 2 3 30 30 H 1.09004 * 109.46792 * 60.00518 * 1 2 3 31 31 H 1.09000 * 109.47607 * 59.99338 * 5 3 2 32 32 H 1.09006 * 109.47179 * 299.99566 * 5 3 2 33 33 H 0.96996 * 119.99765 * 184.97545 * 10 9 7 34 34 H 1.08997 * 109.46379 * 314.34503 * 17 15 6 35 35 H 1.08995 * 109.49654 * 58.67540 * 18 17 15 36 36 H 1.09002 * 109.52157 * 298.59559 * 18 17 15 37 37 H 1.08997 * 109.58299 * 294.84476 * 19 18 17 38 38 H 1.08997 * 109.69935 * 174.49221 * 19 18 17 39 39 H 1.09006 * 109.47231 * 59.99758 * 24 23 21 40 40 H 1.09000 * 109.47490 * 179.97438 * 24 23 21 41 41 H 1.08999 * 109.47596 * 299.99819 * 24 23 21 42 42 H 1.09003 * 109.46826 * 95.65370 * 25 23 21 43 43 H 1.08998 * 109.47089 * 215.65195 * 25 23 21 44 44 H 1.08995 * 109.47643 * 335.65635 * 25 23 21 45 45 H 1.09002 * 109.58818 * 173.14369 * 26 20 19 46 46 H 1.08999 * 109.59012 * 293.57330 * 26 20 19 47 47 H 1.09001 * 109.56306 * 185.55276 * 27 26 20 48 48 H 1.08996 * 109.36803 * 65.50344 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.0729 3.3673 -1.1837 8 1 3.3801 3.1572 -1.9853 9 6 5.0566 4.3342 -1.3513 10 7 6.1389 4.3063 -0.6064 11 14 4.8406 5.6738 -2.6351 12 1 4.1499 6.8379 -2.0244 13 1 6.1723 6.0964 -3.1383 14 1 4.0279 5.1520 -3.7631 15 6 4.2740 3.2966 1.1611 16 8 4.5380 4.4804 1.1698 17 6 4.2729 2.5153 2.4498 18 6 4.2767 3.4848 3.6339 19 6 4.2411 2.6877 4.9416 20 7 5.3553 1.7300 4.9421 21 6 6.2304 1.6955 5.9667 22 8 6.2266 2.5811 6.7996 23 7 7.1061 0.6762 6.0708 24 6 8.2757 0.8016 6.9438 25 6 6.8881 -0.5573 5.3109 26 6 5.5011 0.8150 3.8020 27 6 5.5195 1.6294 2.5097 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 6.7916 5.0207 -0.6724 34 1 3.3809 1.8905 2.4950 35 1 3.4009 4.1311 3.5776 36 1 5.1805 4.0935 3.6034 37 1 3.2963 2.1491 5.0155 38 1 4.3420 3.3664 5.7885 39 1 7.9473 0.9724 7.9691 40 1 8.8629 -0.1156 6.8988 41 1 8.8873 1.6413 6.6136 42 1 7.4587 -0.5179 4.3830 43 1 7.2159 -1.4116 5.9031 44 1 5.8276 -0.6599 5.0811 45 1 6.4345 0.2600 3.8958 46 1 4.6612 0.1205 3.7810 47 1 5.5280 0.9550 1.6534 48 1 6.4117 2.2550 2.4894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348802439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:52 Heat of formation + Delta-G solvation = -102.846590 kcal Electronic energy + Delta-G solvation = -32207.199370 eV Core-core repulsion = 27878.518343 eV Total energy + Delta-G solvation = -4328.681027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92238 -41.42227 -40.30416 -38.17327 -37.39365 -36.85177 -35.98194 -34.39618 -33.30488 -32.22140 -29.96351 -29.00322 -28.36691 -27.68780 -26.64877 -25.03345 -24.22487 -22.63569 -21.96453 -21.17909 -20.21782 -18.73791 -18.61134 -18.15047 -17.88830 -17.46010 -17.31750 -17.17216 -16.99672 -16.57422 -15.96163 -15.65409 -15.35741 -15.30016 -14.96075 -14.84579 -14.45584 -14.44685 -14.33812 -13.91378 -13.80764 -13.70927 -13.44241 -13.26801 -13.05099 -12.96704 -12.89973 -12.81123 -12.72138 -12.56784 -12.15407 -12.11859 -12.04963 -11.69680 -11.66225 -11.61730 -11.46179 -10.98875 -10.87624 -10.10130 -9.87144 -9.28967 -9.19835 -8.23021 -5.93759 1.29648 1.34763 1.44049 1.47080 1.61101 1.70983 2.02355 2.28948 2.56132 2.81871 3.07706 3.24958 3.71855 3.80873 3.84436 4.06171 4.13806 4.20723 4.21762 4.26700 4.36082 4.39099 4.40900 4.42925 4.48521 4.53566 4.58198 4.65837 4.76312 4.76712 4.79652 4.82254 4.89742 4.91914 4.96939 4.99153 5.21745 5.38170 5.42963 5.46513 5.47281 5.66293 5.90691 6.11896 6.85553 6.87767 6.96870 7.16150 7.46946 7.63058 8.32109 8.83406 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.004049 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.189175 B = 6914.256080 C = 8523.351629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.441 3.559 4 O -0.534 6.534 5 C 0.109 3.891 6 N -0.454 5.454 7 C -0.354 4.354 8 H 0.073 0.927 9 C 0.026 3.974 10 N -0.849 5.849 11 Si 0.954 3.046 12 H -0.300 1.300 13 H -0.279 1.279 14 H -0.256 1.256 15 C 0.469 3.531 16 O -0.577 6.577 17 C -0.090 4.090 18 C -0.101 4.101 19 C 0.141 3.859 20 N -0.624 5.624 21 C 0.699 3.301 22 O -0.638 6.638 23 N -0.643 5.643 24 C 0.106 3.894 25 C 0.061 3.939 26 C 0.074 3.926 27 C -0.115 4.115 28 H 0.139 0.861 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.256 0.744 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.115 0.885 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -20.676 9.087 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.283 3.717 4 O -0.423 6.423 5 C -0.016 4.016 6 N -0.175 5.175 7 C -0.481 4.481 8 H 0.091 0.909 9 C -0.181 4.181 10 N -0.485 5.485 11 Si 0.780 3.220 12 H -0.227 1.227 13 H -0.205 1.205 14 H -0.180 1.180 15 C 0.258 3.742 16 O -0.457 6.457 17 C -0.112 4.112 18 C -0.140 4.140 19 C 0.017 3.983 20 N -0.360 5.360 21 C 0.402 3.598 22 O -0.520 6.520 23 N -0.381 5.381 24 C -0.036 4.036 25 C -0.079 4.079 26 C -0.046 4.046 27 C -0.154 4.154 28 H 0.157 0.843 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.162 0.838 46 H 0.124 0.876 47 H 0.116 0.884 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.322 -19.296 9.511 21.553 hybrid contribution -0.356 1.938 -0.919 2.174 sum -1.678 -17.358 8.592 19.441 Atomic orbital electron populations 1.23498 0.75516 1.05615 1.01907 1.86502 1.24424 1.32286 1.84026 1.25239 0.93634 0.81317 0.71543 1.90683 1.67676 1.38049 1.45865 1.21409 0.85936 0.86354 1.07918 1.43206 1.60900 1.08132 1.05293 1.19123 1.12935 1.22804 0.93249 0.90917 1.25630 0.93025 1.00621 0.98809 1.69986 1.07363 1.30593 1.40534 0.85553 0.77431 0.79739 0.79263 1.22725 1.20495 1.18016 1.20744 0.80870 0.87548 0.85007 1.90490 1.50350 1.18543 1.86295 1.21186 1.00714 0.97415 0.91902 1.21524 1.01299 0.97299 0.93861 1.21400 0.88963 0.91364 0.96544 1.47319 1.29515 1.39202 1.19967 1.16203 0.79435 0.82361 0.81758 1.90844 1.74275 1.41741 1.45126 1.46975 1.26300 1.15344 1.49466 1.21582 0.85680 1.03297 0.93087 1.22642 1.03750 0.85041 0.96487 1.23297 1.07297 0.91761 0.82270 1.21844 0.95515 0.98242 0.99785 0.84301 0.92416 0.93113 0.85316 0.83978 0.93426 0.88433 0.92080 0.94721 0.88828 0.90676 0.93320 0.86705 0.94143 0.90170 0.88626 0.88997 0.83849 0.87568 0.88358 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -9.20 10.57 -51.44 -0.54 -9.74 16 3 C 0.44 15.08 8.00 71.23 0.57 15.65 16 4 O -0.53 -23.45 16.08 21.94 0.35 -23.10 16 5 C 0.11 3.68 5.46 85.63 0.47 4.15 16 6 N -0.45 -21.78 2.10 -639.59 -1.34 -23.12 16 7 C -0.35 -19.58 9.22 84.04 0.77 -18.80 16 8 H 0.07 3.99 7.92 -2.91 -0.02 3.97 16 9 C 0.03 1.51 4.28 84.93 0.36 1.87 16 10 N -0.85 -51.00 11.25 21.66 0.24 -50.76 16 11 Si 0.95 46.93 29.61 68.60 2.03 48.96 16 12 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 C 0.47 23.44 6.12 87.66 0.54 23.98 16 16 O -0.58 -35.58 13.24 -3.07 -0.04 -35.62 16 17 C -0.09 -3.24 1.63 -11.51 -0.02 -3.26 16 18 C -0.10 -3.77 4.73 30.67 0.15 -3.62 16 19 C 0.14 4.13 6.45 86.36 0.56 4.69 16 20 N -0.62 -16.72 2.94 -837.75 -2.46 -19.18 16 21 C 0.70 21.00 7.96 179.05 1.43 22.43 16 22 O -0.64 -25.05 15.87 -3.97 -0.06 -25.12 16 23 N -0.64 -13.30 3.25 -951.73 -3.10 -16.39 16 24 C 0.11 1.86 10.23 127.77 1.31 3.16 16 25 C 0.06 0.62 8.46 127.77 1.08 1.70 16 26 C 0.07 1.43 4.44 86.22 0.38 1.81 16 27 C -0.12 -3.34 4.99 30.53 0.15 -3.19 16 28 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.13 3.88 8.08 -2.39 -0.02 3.87 16 32 H 0.14 3.57 4.49 -2.38 -0.01 3.56 16 33 H 0.26 15.19 8.32 -92.71 -0.77 14.42 16 34 H 0.10 2.94 7.25 -2.39 -0.02 2.93 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.03 1.56 7.99 -2.39 -0.02 1.54 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 2.47 7.02 -2.39 -0.02 2.46 16 39 H 0.05 0.95 8.12 -2.38 -0.02 0.93 16 40 H 0.11 1.01 7.87 -2.39 -0.02 0.99 16 41 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.63 6.65 -2.39 -0.02 0.62 16 43 H 0.10 0.48 8.04 -2.39 -0.02 0.46 16 44 H 0.09 0.83 5.40 -2.39 -0.01 0.82 16 45 H 0.14 2.07 3.11 -23.95 -0.07 1.99 16 46 H 0.11 1.32 7.78 -2.39 -0.02 1.30 16 47 H 0.10 2.46 6.21 -2.39 -0.01 2.44 16 48 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -92.31 379.94 4.93 -87.37 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.91 Total: 14.36 kcal Atomic # 6 Polarization: 43.40 SS G_CDS: 8.94 Total: 52.34 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -6.66 Total: -109.45 kcal Atomic # 8 Polarization: -93.29 SS G_CDS: -0.29 Total: -93.58 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -92.31 4.93 -87.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348802439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.473 kcal (2) G-P(sol) polarization free energy of solvation -92.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds