Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99923 * 2 1 4 4 O 1.20826 * 119.99592 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00286 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47253 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99906 * 264.08510 * 6 5 3 8 8 H 1.07998 * 119.99834 * 196.60485 * 7 6 5 9 9 C 1.38951 * 120.00097 * 16.60949 * 7 6 5 10 10 N 1.31400 * 120.00388 * 20.78431 * 9 7 6 11 11 Si 1.86804 * 119.99502 * 200.78955 * 9 7 6 12 12 H 1.48499 * 109.47234 * 89.99774 * 11 9 7 13 13 H 1.48499 * 109.46858 * 209.99803 * 11 9 7 14 14 H 1.48498 * 109.47382 * 329.99505 * 11 9 7 15 15 C 1.34779 * 119.99673 * 84.08489 * 6 5 3 16 16 O 1.21290 * 119.99771 * 0.02562 * 15 6 5 17 17 C 1.50691 * 120.00001 * 179.97438 * 15 6 5 18 18 N 1.46500 * 109.47592 * 180.02562 * 17 15 6 19 19 C 1.34770 * 120.00478 * 180.02562 * 18 17 15 20 20 O 1.21595 * 119.99820 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00373 * 179.97438 * 19 18 17 22 22 C 1.46496 * 120.00181 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47372 * 275.00264 * 22 21 19 24 24 C 1.53005 * 109.46896 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47301 * 60.00201 * 24 23 22 26 26 C 1.53002 * 109.46728 * 299.99502 * 25 24 23 27 27 C 1.53001 * 109.46933 * 154.99862 * 22 21 19 28 28 H 1.09008 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47085 * 299.99513 * 1 2 3 30 30 H 1.08991 * 109.47208 * 60.00104 * 1 2 3 31 31 H 1.09003 * 109.47135 * 59.99805 * 5 3 2 32 32 H 1.08994 * 109.47157 * 299.99860 * 5 3 2 33 33 H 0.96994 * 120.00259 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47305 * 60.00025 * 17 15 6 35 35 H 1.09003 * 109.47418 * 300.00307 * 17 15 6 36 36 H 0.96999 * 119.99303 * 359.97438 * 18 17 15 37 37 H 0.96999 * 119.99407 * 359.97438 * 21 19 18 38 38 H 1.09003 * 109.47333 * 35.00434 * 22 21 19 39 39 H 1.08999 * 109.46890 * 299.99608 * 23 22 21 40 40 H 1.08993 * 109.47245 * 59.99824 * 23 22 21 41 41 H 1.08999 * 109.46885 * 299.99432 * 24 23 22 42 42 H 1.09001 * 109.46541 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.46991 * 179.97438 * 25 24 23 44 44 H 1.08992 * 109.47468 * 59.99170 * 25 24 23 45 45 H 1.09000 * 109.47650 * 300.00310 * 26 25 24 46 46 H 1.09002 * 109.47289 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.47282 * 299.99853 * 27 22 21 48 48 H 1.08999 * 109.47325 * 60.00394 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2928 3.3023 -1.1823 8 1 4.8463 4.2296 -1.1746 9 6 3.8960 2.7400 -2.3895 10 7 2.9077 1.8746 -2.4179 11 14 4.7679 3.2145 -3.9720 12 1 5.9098 2.2937 -4.2032 13 1 3.8171 3.1191 -5.1087 14 1 5.2698 4.6077 -3.8621 15 6 4.0577 3.3605 1.1598 16 8 3.7828 2.8096 2.2048 17 6 4.4854 4.8054 1.1594 18 7 4.4884 5.3143 2.5332 19 6 4.8398 6.5922 2.7778 20 8 5.1549 7.3227 1.8582 21 7 4.8420 7.0604 4.0416 22 6 5.2245 8.4494 4.3075 23 6 6.7470 8.5455 4.4250 24 6 7.1463 9.9961 4.7033 25 6 6.5035 10.4600 6.0119 26 6 4.9811 10.3638 5.8943 27 6 4.5816 8.9139 5.6158 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7808 0.8891 33 1 2.6310 1.4818 -3.2605 34 1 3.7904 5.3900 0.5565 35 1 5.4881 4.8875 0.7398 36 1 4.2366 4.7316 3.2666 37 1 4.5903 6.4778 4.7750 38 1 4.8825 9.0834 3.4895 39 1 7.0889 7.9116 5.2431 40 1 7.2050 8.2146 3.4930 41 1 6.8043 10.6304 3.8855 42 1 8.2309 10.0644 4.7875 43 1 6.7884 11.4932 6.2104 44 1 6.8455 9.8256 6.8296 45 1 4.6390 10.9981 5.0766 46 1 4.5230 10.6947 6.8264 47 1 3.4970 8.8454 5.5320 48 1 4.9236 8.2799 6.4339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348802467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = -155.159590 kcal Electronic energy + Delta-G solvation = -30416.236096 eV Core-core repulsion = 26085.286607 eV Total energy + Delta-G solvation = -4330.949489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.06051 -39.50808 -38.56908 -37.93054 -35.58874 -34.73261 -34.01973 -33.76895 -31.69992 -30.94643 -29.73433 -28.78707 -26.94584 -25.85410 -24.48326 -22.84460 -22.41513 -20.59658 -20.32677 -20.02141 -19.38203 -18.34984 -17.23094 -16.64456 -16.32958 -16.01729 -15.57378 -15.32544 -15.24361 -15.06554 -14.58140 -14.46928 -14.39139 -14.25411 -13.99027 -13.69750 -13.45854 -12.92954 -12.75204 -12.62485 -12.52219 -12.37080 -12.33088 -11.70320 -11.58020 -11.39461 -11.36871 -11.33670 -11.28696 -10.86104 -10.84605 -10.61768 -10.60914 -10.43422 -10.37357 -9.86457 -9.84592 -9.67347 -9.09034 -8.99096 -8.80096 -8.46229 -8.07774 -6.59508 -4.09561 2.91455 3.05304 3.17875 3.21404 3.38453 3.54920 3.63487 3.90235 4.03698 4.38808 4.50501 4.57523 4.67896 4.83158 4.90788 4.96874 5.07697 5.26750 5.31532 5.32995 5.44609 5.57503 5.66553 5.74207 5.81423 5.82844 5.86333 5.91138 5.91776 5.92886 6.04679 6.13071 6.14945 6.20314 6.26306 6.31129 6.35869 6.55905 6.69718 6.86440 7.23090 7.28621 7.38165 7.49398 8.12675 8.37397 8.86573 8.93525 9.03605 9.21459 9.59615 10.47528 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.002525 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.324165 B =11084.961105 C =12457.893903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.485 3.515 4 O -0.499 6.499 5 C 0.156 3.844 6 N -0.419 5.419 7 C -0.343 4.343 8 H 0.109 0.891 9 C 0.041 3.959 10 N -0.866 5.866 11 Si 0.928 3.072 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.460 3.540 16 O -0.605 6.605 17 C 0.141 3.859 18 N -0.729 5.729 19 C 0.705 3.295 20 O -0.595 6.595 21 N -0.747 5.747 22 C 0.166 3.834 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.127 4.127 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.274 0.726 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.403 0.597 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 7.168 12.082 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.030 3.970 6 N -0.137 5.137 7 C -0.470 4.470 8 H 0.127 0.873 9 C -0.165 4.165 10 N -0.503 5.503 11 Si 0.754 3.246 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.191 1.191 15 C 0.249 3.751 16 O -0.492 6.492 17 C 0.014 3.986 18 N -0.387 5.387 19 C 0.404 3.596 20 O -0.474 6.474 21 N -0.402 5.402 22 C 0.060 3.940 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.165 4.165 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.240 0.760 37 H 0.227 0.773 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.521 7.734 11.526 14.321 hybrid contribution -0.315 -0.373 -0.450 0.664 sum 3.207 7.361 11.077 13.680 Atomic orbital electron populations 1.22938 0.78626 1.01850 1.01669 1.86451 1.21736 1.35403 1.85685 1.23896 0.92227 0.80608 0.70667 1.90525 1.66480 1.36374 1.44981 1.20512 0.87348 0.85276 1.03815 1.43328 1.56234 1.08136 1.06014 1.19752 1.35167 1.09925 0.82125 0.87327 1.25249 0.94612 0.96760 0.99838 1.69833 1.22530 1.29704 1.28247 0.85893 0.78972 0.79452 0.80261 1.20029 1.20943 1.19062 1.20017 0.82916 0.88022 0.84117 1.90509 1.56647 1.70076 1.31942 1.20696 1.02959 0.92990 0.81987 1.44893 1.72558 1.10890 1.10311 1.15867 0.78458 0.82080 0.83170 1.90905 1.55889 1.57347 1.43267 1.45166 1.74573 1.13501 1.06990 1.20758 0.93944 0.81754 0.97520 1.21961 0.96043 0.96640 1.02328 1.21499 1.00156 0.96280 0.97575 1.21573 0.95323 1.01037 0.97928 1.21467 0.96063 0.95963 1.01833 1.21808 1.00779 0.97013 0.96897 0.89558 0.93151 0.92575 0.85665 0.89838 0.91491 0.89080 0.89613 0.76000 0.77257 0.89497 0.92047 0.91157 0.91700 0.91903 0.92032 0.92003 0.91628 0.91680 0.91286 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -7.95 10.57 -39.26 -0.41 -8.37 16 3 C 0.48 11.81 6.13 36.00 0.22 12.03 16 4 O -0.50 -13.70 15.79 -18.75 -0.30 -14.00 16 5 C 0.16 3.63 5.14 -5.19 -0.03 3.61 16 6 N -0.42 -10.23 2.18 -116.10 -0.25 -10.48 16 7 C -0.34 -8.42 9.15 -14.93 -0.14 -8.55 16 8 H 0.11 2.55 6.55 -52.49 -0.34 2.20 16 9 C 0.04 1.00 4.90 -17.47 -0.09 0.91 16 10 N -0.87 -21.91 9.24 55.50 0.51 -21.40 16 11 Si 0.93 19.07 29.60 -169.99 -5.03 14.03 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.46 10.79 7.49 -10.99 -0.08 10.71 16 16 O -0.60 -14.81 15.35 5.55 0.09 -14.73 16 17 C 0.14 2.93 4.60 -5.20 -0.02 2.91 16 18 N -0.73 -13.23 5.53 -66.42 -0.37 -13.59 16 19 C 0.70 12.34 8.53 -86.92 -0.74 11.59 16 20 O -0.60 -12.50 16.01 5.28 0.08 -12.42 16 21 N -0.75 -9.69 5.08 -58.68 -0.30 -9.98 16 22 C 0.17 1.89 2.45 -67.93 -0.17 1.73 16 23 C -0.13 -1.41 5.50 -26.73 -0.15 -1.56 16 24 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 25 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 26 C -0.12 -0.85 5.92 -26.75 -0.16 -1.01 16 27 C -0.13 -1.08 5.39 -26.75 -0.14 -1.22 16 28 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 29 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.13 2.89 6.34 -51.93 -0.33 2.56 16 32 H 0.08 1.80 7.61 -51.93 -0.40 1.40 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.09 2.02 8.10 -51.93 -0.42 1.60 16 35 H 0.09 1.74 7.70 -51.93 -0.40 1.34 16 36 H 0.40 6.92 7.45 -40.82 -0.30 6.62 16 37 H 0.39 4.14 8.62 -40.82 -0.35 3.79 16 38 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -32.04 392.33 -8.38 -40.42 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.57 Total: 13.88 kcal Atomic # 6 Polarization: 31.47 SS G_CDS: -0.74 Total: 30.73 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.41 Total: -55.46 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -0.54 Total: -49.51 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.04 -8.38 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348802467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.741 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds