Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99923 * 2 1 4 4 O 1.20826 * 119.99592 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00286 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47253 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99906 * 264.08510 * 6 5 3 8 8 H 1.07998 * 119.99834 * 196.60485 * 7 6 5 9 9 C 1.38951 * 120.00097 * 16.60949 * 7 6 5 10 10 N 1.31400 * 120.00388 * 20.78431 * 9 7 6 11 11 Si 1.86804 * 119.99502 * 200.78955 * 9 7 6 12 12 H 1.48499 * 109.47234 * 89.99774 * 11 9 7 13 13 H 1.48499 * 109.46858 * 209.99803 * 11 9 7 14 14 H 1.48498 * 109.47382 * 329.99505 * 11 9 7 15 15 C 1.34779 * 119.99673 * 84.08489 * 6 5 3 16 16 O 1.21290 * 119.99771 * 0.02562 * 15 6 5 17 17 C 1.50691 * 120.00001 * 179.97438 * 15 6 5 18 18 N 1.46500 * 109.47592 * 180.02562 * 17 15 6 19 19 C 1.34770 * 120.00478 * 180.02562 * 18 17 15 20 20 O 1.21595 * 119.99820 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00373 * 179.97438 * 19 18 17 22 22 C 1.46496 * 120.00181 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47372 * 275.00264 * 22 21 19 24 24 C 1.53005 * 109.46896 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47301 * 60.00201 * 24 23 22 26 26 C 1.53002 * 109.46728 * 299.99502 * 25 24 23 27 27 C 1.53001 * 109.46933 * 154.99862 * 22 21 19 28 28 H 1.09008 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47085 * 299.99513 * 1 2 3 30 30 H 1.08991 * 109.47208 * 60.00104 * 1 2 3 31 31 H 1.09003 * 109.47135 * 59.99805 * 5 3 2 32 32 H 1.08994 * 109.47157 * 299.99860 * 5 3 2 33 33 H 0.96994 * 120.00259 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47305 * 60.00025 * 17 15 6 35 35 H 1.09003 * 109.47418 * 300.00307 * 17 15 6 36 36 H 0.96999 * 119.99303 * 359.97438 * 18 17 15 37 37 H 0.96999 * 119.99407 * 359.97438 * 21 19 18 38 38 H 1.09003 * 109.47333 * 35.00434 * 22 21 19 39 39 H 1.08999 * 109.46890 * 299.99608 * 23 22 21 40 40 H 1.08993 * 109.47245 * 59.99824 * 23 22 21 41 41 H 1.08999 * 109.46885 * 299.99432 * 24 23 22 42 42 H 1.09001 * 109.46541 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.46991 * 179.97438 * 25 24 23 44 44 H 1.08992 * 109.47468 * 59.99170 * 25 24 23 45 45 H 1.09000 * 109.47650 * 300.00310 * 26 25 24 46 46 H 1.09002 * 109.47289 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.47282 * 299.99853 * 27 22 21 48 48 H 1.08999 * 109.47325 * 60.00394 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.2928 3.3023 -1.1823 8 1 4.8463 4.2296 -1.1746 9 6 3.8960 2.7400 -2.3895 10 7 2.9077 1.8746 -2.4179 11 14 4.7679 3.2145 -3.9720 12 1 5.9098 2.2937 -4.2032 13 1 3.8171 3.1191 -5.1087 14 1 5.2698 4.6077 -3.8621 15 6 4.0577 3.3605 1.1598 16 8 3.7828 2.8096 2.2048 17 6 4.4854 4.8054 1.1594 18 7 4.4884 5.3143 2.5332 19 6 4.8398 6.5922 2.7778 20 8 5.1549 7.3227 1.8582 21 7 4.8420 7.0604 4.0416 22 6 5.2245 8.4494 4.3075 23 6 6.7470 8.5455 4.4250 24 6 7.1463 9.9961 4.7033 25 6 6.5035 10.4600 6.0119 26 6 4.9811 10.3638 5.8943 27 6 4.5816 8.9139 5.6158 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7808 0.8891 33 1 2.6310 1.4818 -3.2605 34 1 3.7904 5.3900 0.5565 35 1 5.4881 4.8875 0.7398 36 1 4.2366 4.7316 3.2666 37 1 4.5903 6.4778 4.7750 38 1 4.8825 9.0834 3.4895 39 1 7.0889 7.9116 5.2431 40 1 7.2050 8.2146 3.4930 41 1 6.8043 10.6304 3.8855 42 1 8.2309 10.0644 4.7875 43 1 6.7884 11.4932 6.2104 44 1 6.8455 9.8256 6.8296 45 1 4.6390 10.9981 5.0766 46 1 4.5230 10.6947 6.8264 47 1 3.4970 8.8454 5.5320 48 1 4.9236 8.2799 6.4339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348802467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = -176.204572 kcal Electronic energy + Delta-G solvation = -30417.148675 eV Core-core repulsion = 26085.286607 eV Total energy + Delta-G solvation = -4331.862068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55330 -41.16348 -40.19211 -39.06434 -37.39218 -36.61583 -35.37109 -35.12548 -33.58891 -31.66616 -31.12392 -30.15065 -28.42107 -27.55519 -26.24646 -23.62769 -23.32930 -22.22322 -21.74939 -21.22106 -20.88396 -19.80149 -18.87822 -18.47805 -17.79099 -17.54649 -17.34276 -16.94077 -16.73196 -16.39624 -16.11006 -15.97705 -15.68167 -15.29099 -15.13466 -15.00209 -14.77258 -14.35318 -14.27888 -14.09512 -13.76504 -13.54627 -13.39198 -13.26022 -13.14306 -13.08958 -12.86140 -12.55184 -12.45867 -12.21327 -12.08966 -12.04037 -11.64678 -11.59280 -11.55633 -11.36699 -11.26186 -11.10758 -10.97831 -10.67539 -10.35916 -9.97596 -9.78003 -8.45164 -6.01286 1.35264 1.49058 1.54792 1.61937 1.67420 1.76240 2.11693 2.18616 2.32185 2.77710 3.05247 3.31751 3.74837 3.85385 4.01675 4.06742 4.25073 4.25410 4.33876 4.35121 4.41215 4.42245 4.47703 4.53590 4.55004 4.58973 4.59970 4.69248 4.73349 4.73541 4.92034 5.10356 5.14740 5.23049 5.24632 5.27926 5.35695 5.41543 5.44134 5.52488 5.55796 5.63671 5.67679 5.99798 6.24778 6.97900 7.06567 7.17588 7.34302 7.56310 7.72445 8.61641 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.002525 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.324165 B =11084.961105 C =12457.893903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.487 3.513 4 O -0.538 6.538 5 C 0.153 3.847 6 N -0.429 5.429 7 C -0.362 4.362 8 H 0.113 0.887 9 C 0.005 3.995 10 N -0.890 5.890 11 Si 0.994 3.006 12 H -0.263 1.263 13 H -0.288 1.288 14 H -0.265 1.265 15 C 0.454 3.546 16 O -0.619 6.619 17 C 0.154 3.846 18 N -0.726 5.726 19 C 0.703 3.297 20 O -0.633 6.633 21 N -0.729 5.729 22 C 0.161 3.839 23 C -0.127 4.127 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.119 4.119 28 H 0.135 0.865 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.275 0.725 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.409 0.591 37 H 0.409 0.591 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 7.359 13.385 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.330 3.670 4 O -0.427 6.427 5 C 0.027 3.973 6 N -0.147 5.147 7 C -0.488 4.488 8 H 0.131 0.869 9 C -0.199 4.199 10 N -0.527 5.527 11 Si 0.818 3.182 12 H -0.188 1.188 13 H -0.214 1.214 14 H -0.189 1.189 15 C 0.244 3.756 16 O -0.507 6.507 17 C 0.026 3.974 18 N -0.383 5.383 19 C 0.402 3.598 20 O -0.515 6.515 21 N -0.384 5.384 22 C 0.057 3.943 23 C -0.165 4.165 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.157 4.157 28 H 0.153 0.847 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.245 0.755 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.951 7.902 12.890 15.627 hybrid contribution -0.526 -0.480 -0.815 1.083 sum 3.426 7.422 12.075 14.581 Atomic orbital electron populations 1.23302 0.76150 1.04918 1.01195 1.86422 1.24116 1.33638 1.84978 1.24044 0.92599 0.80812 0.69578 1.90497 1.67372 1.37758 1.47025 1.20606 0.87160 0.85135 1.04372 1.43512 1.56229 1.08641 1.06269 1.20048 1.35678 1.10530 0.82573 0.86907 1.26057 0.94773 0.96601 1.02433 1.69924 1.23375 1.30546 1.28878 0.84903 0.77871 0.79256 0.76193 1.18840 1.21390 1.18931 1.20384 0.82587 0.88804 0.83808 1.90479 1.57272 1.70650 1.32272 1.20410 1.02482 0.91197 0.83332 1.44753 1.72893 1.11325 1.09378 1.16024 0.78132 0.81456 0.84157 1.90878 1.57555 1.58137 1.44897 1.45098 1.73195 1.14369 1.05741 1.20940 0.94787 0.80196 0.98405 1.21904 0.95159 0.98361 1.01118 1.21498 1.00877 0.94571 0.98413 1.21558 0.94928 1.01993 0.96927 1.21492 0.96362 0.94872 1.02521 1.21779 1.00544 0.98086 0.95283 0.84704 0.93055 0.93683 0.85702 0.88433 0.91471 0.90806 0.89229 0.75297 0.75468 0.92178 0.90773 0.94393 0.92703 0.91057 0.90714 0.91006 0.92326 0.89751 0.91220 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.37 -15.64 10.57 -51.43 -0.54 -16.19 16 3 C 0.49 23.85 6.13 71.23 0.44 24.29 16 4 O -0.54 -30.07 15.79 21.97 0.35 -29.73 16 5 C 0.15 7.16 5.14 85.63 0.44 7.60 16 6 N -0.43 -21.21 2.18 -639.61 -1.39 -22.60 16 7 C -0.36 -17.95 9.15 84.04 0.77 -17.18 16 8 H 0.11 5.36 6.55 -2.91 -0.02 5.35 16 9 C 0.00 0.22 4.90 84.93 0.42 0.63 16 10 N -0.89 -45.24 9.24 21.66 0.20 -45.04 16 11 Si 0.99 38.95 29.60 68.60 2.03 40.98 16 12 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 13 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 15 C 0.45 21.63 7.49 87.65 0.66 22.28 16 16 O -0.62 -30.48 15.35 -3.06 -0.05 -30.52 16 17 C 0.15 6.55 4.60 85.63 0.39 6.94 16 18 N -0.73 -26.60 5.53 -482.30 -2.67 -29.27 16 19 C 0.70 24.93 8.53 179.06 1.53 26.45 16 20 O -0.63 -27.40 16.01 -4.02 -0.06 -27.47 16 21 N -0.73 -18.55 5.08 -457.81 -2.33 -20.88 16 22 C 0.16 3.62 2.45 44.99 0.11 3.73 16 23 C -0.13 -2.67 5.50 30.60 0.17 -2.51 16 24 C -0.12 -1.91 5.92 30.60 0.18 -1.72 16 25 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 26 C -0.11 -1.43 5.92 30.58 0.18 -1.25 16 27 C -0.12 -1.78 5.39 30.58 0.16 -1.61 16 28 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.13 5.82 6.34 -2.39 -0.02 5.80 16 32 H 0.10 4.21 7.61 -2.39 -0.02 4.19 16 33 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 34 H 0.07 3.40 8.10 -2.38 -0.02 3.38 16 35 H 0.09 3.72 7.70 -2.39 -0.02 3.70 16 36 H 0.41 14.00 7.45 -92.71 -0.69 13.31 16 37 H 0.41 8.02 8.62 -92.71 -0.80 7.22 16 38 H 0.06 1.69 7.58 -2.39 -0.02 1.68 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.10 392.33 1.86 -68.24 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.50 Total: 43.57 kcal Atomic # 6 Polarization: 62.07 SS G_CDS: 6.82 Total: 68.89 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -6.19 Total: -117.79 kcal Atomic # 8 Polarization: -103.59 SS G_CDS: -0.31 Total: -103.90 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -70.10 1.86 -68.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348802467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.963 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds