Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99494 * 2 1 4 4 O 1.20821 * 120.00522 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99662 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47055 * 180.02562 * 5 3 2 7 7 C 1.36931 * 120.00272 * 89.99965 * 6 5 3 8 8 H 1.07999 * 119.99975 * 34.33618 * 7 6 5 9 9 C 1.38817 * 120.00188 * 214.06144 * 7 6 5 10 10 N 1.31619 * 119.99900 * 207.00779 * 9 7 6 11 11 Si 1.86802 * 119.99945 * 27.00624 * 9 7 6 12 12 H 1.48506 * 109.47015 * 5.10319 * 11 9 7 13 13 H 1.48496 * 109.46847 * 125.09743 * 11 9 7 14 14 H 1.48498 * 109.47101 * 245.10320 * 11 9 7 15 15 C 1.46504 * 120.00135 * 270.00087 * 6 5 3 16 16 C 1.50698 * 109.47043 * 275.57264 * 15 6 5 17 17 O 1.21283 * 120.00359 * 3.35027 * 16 15 6 18 18 N 1.34781 * 120.00342 * 183.35868 * 16 15 6 19 19 C 1.46930 * 120.62711 * 4.75956 * 18 16 15 20 20 C 1.53625 * 108.54178 * 126.37104 * 19 18 16 21 21 C 1.53037 * 109.24187 * 54.85601 * 20 19 18 22 22 C 1.53040 * 109.53882 * 298.51289 * 21 20 19 23 23 H 1.08999 * 109.52555 * 301.39334 * 22 21 20 24 24 N 1.46500 * 109.49808 * 181.31530 * 22 21 20 25 25 C 1.34774 * 119.99967 * 155.15788 * 24 22 21 26 26 C 1.50704 * 119.99767 * 180.02562 * 25 24 22 27 27 O 1.21283 * 120.00274 * 0.02562 * 25 24 22 28 28 C 1.46920 * 120.63475 * 185.04419 * 18 16 15 29 29 H 1.09003 * 109.47069 * 60.00170 * 1 2 3 30 30 H 1.09001 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47344 * 299.99986 * 1 2 3 32 32 H 1.08995 * 109.47122 * 60.00456 * 5 3 2 33 33 H 1.08998 * 109.47235 * 299.99813 * 5 3 2 34 34 H 0.96995 * 120.00145 * 359.97438 * 10 9 7 35 35 H 1.09006 * 109.47073 * 35.56190 * 15 6 5 36 36 H 1.08993 * 109.47484 * 155.56485 * 15 6 5 37 37 H 1.08998 * 109.58865 * 246.20614 * 19 18 16 38 38 H 1.09001 * 109.58468 * 6.62975 * 19 18 16 39 39 H 1.09003 * 109.63394 * 294.86488 * 20 19 18 40 40 H 1.08996 * 109.45640 * 174.73981 * 20 19 18 41 41 H 1.08994 * 109.46326 * 178.48627 * 21 20 19 42 42 H 1.09004 * 109.44967 * 58.52008 * 21 20 19 43 43 H 0.97002 * 120.00323 * 335.15922 * 24 22 21 44 44 H 1.08999 * 109.47093 * 90.00359 * 26 25 24 45 45 H 1.09002 * 109.47018 * 210.00205 * 26 25 24 46 46 H 1.08997 * 109.47244 * 330.00048 * 26 25 24 47 47 H 1.09002 * 109.58769 * 353.37084 * 28 18 16 48 48 H 1.09003 * 109.58783 * 113.65099 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1752 3.3362 1.1871 8 1 4.5678 2.8040 2.0410 9 6 3.8724 4.6870 1.2905 10 7 4.5051 5.4380 2.1668 11 14 2.5670 5.4387 0.1857 12 1 1.9227 4.3688 -0.6178 13 1 1.5424 6.1158 1.0204 14 1 3.1982 6.4286 -0.7235 15 6 4.1897 3.3826 -1.2674 16 6 5.5833 3.1082 -1.7710 17 8 6.3082 2.3476 -1.1652 18 7 6.0242 3.7079 -2.8945 19 6 5.1981 4.7099 -3.5818 20 6 6.0305 5.9884 -3.7628 21 6 7.3331 5.6437 -4.4883 22 6 8.1434 4.6572 -3.6443 23 1 8.3535 5.0982 -2.6699 24 7 9.4043 4.3520 -4.3249 25 6 10.4720 3.9404 -3.6128 26 6 11.7692 3.6271 -4.3129 27 8 10.3888 3.8221 -2.4086 28 6 7.3374 3.3677 -3.4588 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7808 -0.8891 33 1 3.9557 0.7811 0.8908 34 1 5.1826 5.0477 2.7407 35 1 3.4630 3.0322 -2.0005 36 1 4.0632 4.4543 -1.1141 37 1 4.8946 4.3272 -4.5562 38 1 4.3149 4.9291 -2.9818 39 1 6.2599 6.4173 -2.7873 40 1 5.4650 6.7093 -4.3532 41 1 7.9144 6.5526 -4.6425 42 1 7.1026 5.1920 -5.4532 43 1 9.4708 4.4463 -5.2880 44 1 12.3807 4.5278 -4.3652 45 1 12.3044 2.8562 -3.7584 46 1 11.5608 3.2704 -5.3216 47 1 7.8663 2.7010 -2.7777 48 1 7.2047 2.8755 -4.4223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356673042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = -121.546976 kcal Electronic energy + Delta-G solvation = -31497.625284 eV Core-core repulsion = 27168.133347 eV Total energy + Delta-G solvation = -4329.491937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.27046 -39.62946 -39.15154 -37.24844 -36.01431 -34.91447 -34.55864 -32.22115 -31.76161 -31.00835 -29.38599 -28.51607 -27.20231 -26.02252 -24.88782 -23.17603 -22.09230 -21.03024 -20.60336 -19.91872 -18.93991 -17.47946 -17.06977 -16.92131 -16.68719 -16.21069 -15.94354 -15.82634 -15.68110 -15.08259 -15.00500 -14.50448 -14.27207 -13.99830 -13.86748 -13.53181 -13.37028 -13.09220 -12.95903 -12.75178 -12.67817 -12.65069 -12.51798 -12.33626 -11.88366 -11.66335 -11.62139 -11.33525 -11.14047 -11.00415 -10.96636 -10.65570 -10.34713 -10.23238 -10.04799 -9.94997 -9.57169 -9.38282 -9.31759 -8.99144 -8.46453 -8.25408 -7.19815 -6.36176 -3.45671 2.55368 2.90758 3.07135 3.27606 3.33206 3.40175 3.53580 3.63941 3.86544 4.53975 4.57727 4.67763 4.74791 4.79165 4.88053 4.99120 5.02140 5.16713 5.21382 5.27766 5.36398 5.40283 5.43123 5.48757 5.50924 5.58861 5.62373 5.67787 5.79552 5.84522 5.88005 5.90499 5.97339 5.99885 6.10549 6.11271 6.19123 6.33131 6.36547 6.85404 7.07122 7.37002 7.75647 7.98300 8.15078 8.34985 8.63091 8.82335 8.97865 9.45226 10.03084 11.00994 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003436 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.954386 B = 8147.381032 C = 8683.575557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.417 3.583 4 O -0.490 6.490 5 C 0.159 3.841 6 N -0.545 5.545 7 C -0.357 4.357 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.897 5.897 11 Si 1.029 2.971 12 H -0.248 1.248 13 H -0.297 1.297 14 H -0.297 1.297 15 C 0.134 3.866 16 C 0.491 3.509 17 O -0.516 6.516 18 N -0.624 5.624 19 C 0.106 3.894 20 C -0.135 4.135 21 C -0.122 4.122 22 C 0.128 3.872 23 H 0.094 0.906 24 N -0.727 5.727 25 C 0.504 3.496 26 C -0.171 4.171 27 O -0.533 6.533 28 C 0.106 3.894 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.269 0.731 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.399 0.601 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -2.938 -20.375 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.256 3.744 4 O -0.375 6.375 5 C 0.029 3.971 6 N -0.262 5.262 7 C -0.486 4.486 8 H 0.086 0.914 9 C -0.199 4.199 10 N -0.533 5.533 11 Si 0.859 3.141 12 H -0.172 1.172 13 H -0.225 1.225 14 H -0.226 1.226 15 C 0.004 3.996 16 C 0.277 3.723 17 O -0.389 6.389 18 N -0.362 5.362 19 C -0.018 4.018 20 C -0.174 4.174 21 C -0.160 4.160 22 C 0.022 3.978 23 H 0.112 0.888 24 N -0.380 5.380 25 C 0.291 3.709 26 C -0.230 4.230 27 O -0.408 6.408 28 C -0.019 4.019 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.233 0.767 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.655 -1.745 -19.408 19.826 hybrid contribution 0.518 -1.058 -0.096 1.182 sum 4.172 -2.803 -19.504 20.141 Atomic orbital electron populations 1.23040 0.78892 1.02240 1.01823 1.86632 1.21807 1.36074 1.85021 1.26934 0.94626 0.80807 0.72027 1.90639 1.66881 1.36009 1.43973 1.20891 0.84096 0.88887 1.03208 1.43549 1.72690 1.08048 1.01931 1.20059 1.43083 0.94993 0.90427 0.91410 1.26295 0.99505 0.93482 1.00633 1.70886 1.23033 1.36324 1.23020 0.84350 0.77426 0.75630 0.76735 1.17152 1.22507 1.22554 1.21211 0.90770 0.98539 0.89045 1.22836 0.91575 0.79599 0.78248 1.90624 1.57361 1.36131 1.54764 1.48399 1.17741 1.42700 1.27385 1.21816 0.94177 0.88041 0.97717 1.21991 0.95656 0.97753 1.02005 1.21764 0.96594 0.98934 0.98686 1.21373 0.82886 0.95783 0.97740 0.88833 1.46084 1.11516 1.69572 1.10833 1.20883 0.85589 0.76523 0.87940 1.21877 0.95159 1.04353 1.01661 1.90827 1.84241 1.51126 1.14636 1.21761 0.84558 0.96641 0.98943 0.92825 0.89353 0.92580 0.90009 0.88674 0.92102 0.91037 0.89950 0.91416 0.89393 0.90576 0.90066 0.91127 0.91302 0.76733 0.88990 0.88885 0.90313 0.88761 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.38 -6.66 10.57 -39.26 -0.41 -7.08 16 3 C 0.42 8.61 8.03 36.01 0.29 8.90 16 4 O -0.49 -11.55 14.13 -18.75 -0.26 -11.81 16 5 C 0.16 3.35 6.19 -5.19 -0.03 3.32 16 6 N -0.54 -13.40 1.13 -175.98 -0.20 -13.60 16 7 C -0.36 -10.29 9.76 -15.06 -0.15 -10.43 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.01 0.17 5.20 -17.43 -0.09 0.08 16 10 N -0.90 -28.11 13.71 55.49 0.76 -27.35 16 11 Si 1.03 26.00 25.02 -169.99 -4.25 21.74 16 12 H -0.25 -5.95 5.03 56.52 0.28 -5.67 16 13 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 14 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.13 2.91 3.06 -5.19 -0.02 2.90 16 16 C 0.49 10.39 7.75 -10.98 -0.09 10.31 16 17 O -0.52 -12.92 15.77 5.56 0.09 -12.83 16 18 N -0.62 -10.29 2.97 -172.50 -0.51 -10.80 16 19 C 0.11 1.34 6.36 -3.48 -0.02 1.32 16 20 C -0.14 -1.48 6.10 -26.39 -0.16 -1.64 16 21 C -0.12 -1.12 5.35 -26.69 -0.14 -1.27 16 22 C 0.13 1.61 2.60 -67.81 -0.18 1.43 16 23 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 24 N -0.73 -7.09 5.08 -53.69 -0.27 -7.36 16 25 C 0.50 6.12 7.90 -10.98 -0.09 6.03 16 26 C -0.17 -1.20 10.30 36.01 0.37 -0.83 16 27 O -0.53 -9.83 16.76 5.56 0.09 -9.74 16 28 C 0.11 1.56 6.01 -3.71 -0.02 1.54 16 29 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.08 1.53 8.07 -51.93 -0.42 1.11 16 33 H 0.10 1.98 8.04 -51.93 -0.42 1.56 16 34 H 0.27 8.45 8.73 -40.82 -0.36 8.10 16 35 H 0.07 1.35 8.11 -51.93 -0.42 0.92 16 36 H 0.08 1.88 2.93 -51.93 -0.15 1.72 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.20 5.89 -51.93 -0.31 0.89 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 2.29 8.60 -40.82 -0.35 1.94 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 1.77 7.00 -51.93 -0.36 1.41 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -39.78 390.25 -5.94 -45.71 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.59 Total: 4.03 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: 0.74 Total: 23.20 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.22 Total: -59.11 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.50 Total: -41.46 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.25 Total: 21.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.78 -5.94 -45.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356673042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.834 kcal (2) G-P(sol) polarization free energy of solvation -39.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds