Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99893 * 2 1 4 4 O 1.20824 * 120.00304 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47459 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47599 * 180.02562 * 6 5 3 8 8 C 1.53354 * 109.41339 * 295.12748 * 7 6 5 9 9 C 1.53195 * 109.14570 * 178.67370 * 8 7 6 10 10 N 1.46926 * 108.89465 * 54.57617 * 9 8 7 11 11 C 1.34774 * 120.63121 * 126.33965 * 10 9 8 12 12 O 1.21582 * 120.00014 * 354.77536 * 11 10 9 13 13 N 1.34782 * 119.99915 * 174.77166 * 11 10 9 14 14 C 1.46498 * 119.99675 * 184.98301 * 13 11 10 15 15 C 1.50704 * 109.47096 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99525 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00237 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00284 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99541 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00513 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00436 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46952 * 119.99780 * 22 20 18 25 25 H 1.48495 * 109.47301 * 239.99980 * 22 20 18 26 26 C 1.46926 * 118.73722 * 306.32250 * 10 9 8 27 27 C 1.53040 * 109.46007 * 175.00094 * 7 6 5 28 28 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47382 * 299.99757 * 1 2 3 30 30 H 1.08995 * 109.47385 * 59.99990 * 1 2 3 31 31 H 1.08998 * 109.47045 * 60.00404 * 5 3 2 32 32 H 1.09001 * 109.47308 * 300.00116 * 5 3 2 33 33 H 1.09006 * 109.47131 * 59.99550 * 6 5 3 34 34 H 1.09001 * 109.46807 * 300.00241 * 6 5 3 35 35 H 1.08994 * 109.45672 * 55.02507 * 7 6 5 36 36 H 1.08997 * 109.68505 * 58.71217 * 8 7 6 37 37 H 1.09002 * 109.47645 * 298.50845 * 8 7 6 38 38 H 1.08999 * 109.58875 * 294.71912 * 9 8 7 39 39 H 1.09002 * 109.58604 * 174.43479 * 9 8 7 40 40 H 0.96993 * 119.99639 * 4.98764 * 13 11 10 41 41 H 1.09007 * 109.47228 * 300.00071 * 14 13 11 42 42 H 1.08998 * 109.47443 * 60.00096 * 14 13 11 43 43 H 0.97006 * 119.99948 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99713 * 179.97438 * 21 20 18 45 45 H 1.09010 * 109.58451 * 173.39329 * 26 10 9 46 46 H 1.08999 * 109.58904 * 293.67543 * 26 10 9 47 47 H 1.08993 * 109.50186 * 61.43170 * 27 7 6 48 48 H 1.09004 * 109.52060 * 301.35010 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5280 2.8223 0.0011 8 6 6.0692 2.2352 1.3103 9 6 7.6001 2.2881 1.2896 10 7 8.0249 3.6694 1.0247 11 6 8.8877 4.2931 1.8512 12 8 9.2484 3.7486 2.8767 13 7 9.3506 5.5203 1.5409 14 6 10.3704 6.1525 2.3814 15 6 10.7121 7.5094 1.8217 16 8 10.1579 7.9091 0.8195 17 7 11.6327 8.2790 2.4352 18 6 11.9440 9.5132 1.9257 19 1 11.4511 9.8688 1.0329 20 6 12.8935 10.3066 2.5579 21 7 13.4936 9.8737 3.6440 22 14 13.3171 11.9884 1.8641 23 1 12.5074 12.2390 0.6447 24 1 13.0196 13.0315 2.8783 25 1 14.7605 12.0319 1.5180 26 6 7.4916 4.3578 -0.1587 27 6 5.9618 4.2845 -0.1242 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6100 3.2361 0.8911 34 1 3.6107 3.2364 -0.8889 35 1 5.9214 2.2533 -0.8413 36 1 5.7424 1.2003 1.4114 37 1 5.6964 2.8189 2.1519 38 1 7.9779 1.6328 0.5048 39 1 7.9900 1.9647 2.2548 40 1 9.0085 5.9847 0.7612 41 1 9.9871 6.2643 3.3958 42 1 11.2649 5.5300 2.3977 43 1 12.0757 7.9595 3.2369 44 1 14.1567 10.4274 4.0851 45 1 7.8078 5.4010 -0.1480 46 1 7.8625 3.8729 -1.0617 47 1 5.5898 4.8489 0.7308 48 1 5.5565 4.7073 -1.0435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520870310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = -162.243420 kcal Electronic energy + Delta-G solvation = -29132.836445 eV Core-core repulsion = 24801.579778 eV Total energy + Delta-G solvation = -4331.256667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.92446 -40.35143 -38.56804 -37.85565 -36.93200 -34.79904 -34.47856 -33.69350 -31.53170 -31.39895 -31.11720 -28.48864 -27.52060 -26.07317 -24.51373 -23.40131 -22.96531 -21.17363 -20.56010 -19.65165 -19.46319 -18.41749 -18.01415 -17.75755 -17.08122 -16.90723 -16.14559 -15.69848 -15.53536 -15.20299 -14.78839 -14.51669 -14.47047 -14.29406 -14.21438 -14.11764 -13.74776 -13.46492 -13.42199 -13.34198 -12.84991 -12.70409 -12.39311 -12.22056 -12.12200 -11.90409 -11.62770 -11.55564 -11.45983 -11.25731 -11.15146 -11.12152 -10.90755 -10.73395 -10.57040 -10.40298 -10.31631 -9.90748 -9.63827 -8.91584 -8.61424 -8.42548 -8.08897 -6.50577 -3.92519 1.78855 2.28230 2.73972 3.10851 3.23069 3.29730 3.37563 3.76181 4.00642 4.16095 4.22386 4.27222 4.39790 4.57391 4.64993 4.69065 4.75047 4.81435 4.87923 4.93410 5.01913 5.10273 5.10972 5.18306 5.19411 5.26298 5.42662 5.53568 5.57033 5.65169 5.71680 5.79048 5.82005 5.86262 5.95286 5.97896 6.02713 6.09842 6.15366 6.52488 6.77994 7.06800 7.31666 7.47086 7.93709 8.17911 8.46222 8.79818 9.05717 9.40717 9.88507 10.66405 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.001628 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.616014 B =17193.508951 C =17812.753845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.507 6.507 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.086 4.086 8 C -0.134 4.134 9 C 0.130 3.870 10 N -0.631 5.631 11 C 0.708 3.292 12 O -0.597 6.597 13 N -0.725 5.725 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.109 3.891 27 C -0.129 4.129 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.406 0.594 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.273 0.727 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 -20.661 -7.467 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.394 6.394 5 C -0.153 4.153 6 C -0.142 4.142 7 C -0.104 4.104 8 C -0.172 4.172 9 C 0.007 3.993 10 N -0.369 5.369 11 C 0.410 3.590 12 O -0.476 6.476 13 N -0.385 5.385 14 C -0.001 4.001 15 C 0.215 3.785 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.014 4.014 27 C -0.167 4.167 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.246 0.754 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.047 -20.360 -7.256 29.480 hybrid contribution 0.107 0.953 -0.150 0.971 sum -19.941 -19.407 -7.406 28.795 Atomic orbital electron populations 1.23268 0.76288 1.03727 1.02619 1.86513 1.23545 1.33734 1.84171 1.23982 0.92488 0.81240 0.72168 1.90690 1.67357 1.36348 1.45015 1.21530 0.86930 1.00700 1.06101 1.21502 0.95250 0.93360 1.04053 1.21209 0.94064 0.96773 0.98382 1.22152 0.95770 1.01392 0.97912 1.21402 0.93697 0.81383 1.02857 1.47189 1.47868 1.14879 1.27000 1.15761 0.79251 0.81124 0.82905 1.90883 1.63802 1.67201 1.25733 1.44974 1.43918 1.16991 1.32606 1.20791 0.91577 0.93292 0.94462 1.19768 0.84646 0.86944 0.87163 1.90485 1.55988 1.74445 1.27623 1.41791 1.34617 1.15947 1.26038 1.19781 1.20687 0.91925 1.11001 0.87632 1.25321 0.96271 1.00286 0.95842 1.69627 1.26838 1.38546 1.18445 0.85760 0.78302 0.81061 0.78970 1.19151 1.20635 1.20629 1.21651 0.93666 0.98001 0.88091 1.21951 0.95348 0.96297 1.03140 0.88071 0.91855 0.91878 0.87510 0.87317 0.90787 0.90774 0.90539 0.90624 0.91178 0.91910 0.88782 0.75389 0.89995 0.90095 0.77013 0.91658 0.89743 0.91270 0.91102 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.70 10.57 -39.25 -0.41 -3.11 16 3 C 0.46 3.74 7.96 36.01 0.29 4.03 16 4 O -0.51 -5.73 15.73 -18.75 -0.29 -6.03 16 5 C -0.12 -0.61 5.57 -27.88 -0.16 -0.76 16 6 C -0.10 -0.68 3.97 -26.73 -0.11 -0.78 16 7 C -0.09 -0.56 2.15 -90.42 -0.19 -0.75 16 8 C -0.13 -0.98 5.16 -26.45 -0.14 -1.12 16 9 C 0.13 1.28 6.43 -3.71 -0.02 1.26 16 10 N -0.63 -7.86 2.97 -178.49 -0.53 -8.39 16 11 C 0.71 11.83 8.29 -86.91 -0.72 11.11 16 12 O -0.60 -11.79 15.77 5.29 0.08 -11.71 16 13 N -0.73 -12.57 5.44 -66.41 -0.36 -12.93 16 14 C 0.13 2.41 6.16 -5.19 -0.03 2.38 16 15 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 16 O -0.60 -15.29 15.24 5.54 0.08 -15.21 16 17 N -0.55 -13.66 5.29 -10.96 -0.06 -13.71 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.91 13.05 55.50 0.72 -23.18 16 22 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 C 0.11 1.09 6.39 -3.71 -0.02 1.06 16 27 C -0.13 -1.04 5.36 -26.61 -0.14 -1.19 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.44 6.53 -51.93 -0.34 0.10 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.39 6.52 -51.93 -0.34 0.05 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.11 6.99 -51.93 -0.36 0.74 16 40 H 0.41 6.85 4.93 -40.82 -0.20 6.65 16 41 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.08 0.94 5.65 -51.92 -0.29 0.65 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -34.22 393.84 -7.65 -41.87 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.28 Total: 12.51 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: -0.51 Total: 18.44 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.23 Total: -58.22 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.54 Total: -36.06 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.22 -7.65 -41.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520870310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.371 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds