Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99893 * 2 1 4 4 O 1.20824 * 120.00304 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47459 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47599 * 180.02562 * 6 5 3 8 8 C 1.53354 * 109.41339 * 295.12748 * 7 6 5 9 9 C 1.53195 * 109.14570 * 178.67370 * 8 7 6 10 10 N 1.46926 * 108.89465 * 54.57617 * 9 8 7 11 11 C 1.34774 * 120.63121 * 126.33965 * 10 9 8 12 12 O 1.21582 * 120.00014 * 354.77536 * 11 10 9 13 13 N 1.34782 * 119.99915 * 174.77166 * 11 10 9 14 14 C 1.46498 * 119.99675 * 184.98301 * 13 11 10 15 15 C 1.50704 * 109.47096 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99525 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00237 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00284 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99541 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00513 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00436 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46952 * 119.99780 * 22 20 18 25 25 H 1.48495 * 109.47301 * 239.99980 * 22 20 18 26 26 C 1.46926 * 118.73722 * 306.32250 * 10 9 8 27 27 C 1.53040 * 109.46007 * 175.00094 * 7 6 5 28 28 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47382 * 299.99757 * 1 2 3 30 30 H 1.08995 * 109.47385 * 59.99990 * 1 2 3 31 31 H 1.08998 * 109.47045 * 60.00404 * 5 3 2 32 32 H 1.09001 * 109.47308 * 300.00116 * 5 3 2 33 33 H 1.09006 * 109.47131 * 59.99550 * 6 5 3 34 34 H 1.09001 * 109.46807 * 300.00241 * 6 5 3 35 35 H 1.08994 * 109.45672 * 55.02507 * 7 6 5 36 36 H 1.08997 * 109.68505 * 58.71217 * 8 7 6 37 37 H 1.09002 * 109.47645 * 298.50845 * 8 7 6 38 38 H 1.08999 * 109.58875 * 294.71912 * 9 8 7 39 39 H 1.09002 * 109.58604 * 174.43479 * 9 8 7 40 40 H 0.96993 * 119.99639 * 4.98764 * 13 11 10 41 41 H 1.09007 * 109.47228 * 300.00071 * 14 13 11 42 42 H 1.08998 * 109.47443 * 60.00096 * 14 13 11 43 43 H 0.97006 * 119.99948 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99713 * 179.97438 * 21 20 18 45 45 H 1.09010 * 109.58451 * 173.39329 * 26 10 9 46 46 H 1.08999 * 109.58904 * 293.67543 * 26 10 9 47 47 H 1.08993 * 109.50186 * 61.43170 * 27 7 6 48 48 H 1.09004 * 109.52060 * 301.35010 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5280 2.8223 0.0011 8 6 6.0692 2.2352 1.3103 9 6 7.6001 2.2881 1.2896 10 7 8.0249 3.6694 1.0247 11 6 8.8877 4.2931 1.8512 12 8 9.2484 3.7486 2.8767 13 7 9.3506 5.5203 1.5409 14 6 10.3704 6.1525 2.3814 15 6 10.7121 7.5094 1.8217 16 8 10.1579 7.9091 0.8195 17 7 11.6327 8.2790 2.4352 18 6 11.9440 9.5132 1.9257 19 1 11.4511 9.8688 1.0329 20 6 12.8935 10.3066 2.5579 21 7 13.4936 9.8737 3.6440 22 14 13.3171 11.9884 1.8641 23 1 12.5074 12.2390 0.6447 24 1 13.0196 13.0315 2.8783 25 1 14.7605 12.0319 1.5180 26 6 7.4916 4.3578 -0.1587 27 6 5.9618 4.2845 -0.1242 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6100 3.2361 0.8911 34 1 3.6107 3.2364 -0.8889 35 1 5.9214 2.2533 -0.8413 36 1 5.7424 1.2003 1.4114 37 1 5.6964 2.8189 2.1519 38 1 7.9779 1.6328 0.5048 39 1 7.9900 1.9647 2.2548 40 1 9.0085 5.9847 0.7612 41 1 9.9871 6.2643 3.3958 42 1 11.2649 5.5300 2.3977 43 1 12.0757 7.9595 3.2369 44 1 14.1567 10.4274 4.0851 45 1 7.8078 5.4010 -0.1480 46 1 7.8625 3.8729 -1.0617 47 1 5.5898 4.8489 0.7308 48 1 5.5565 4.7073 -1.0435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520870310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = -185.604338 kcal Electronic energy + Delta-G solvation = -29133.849450 eV Core-core repulsion = 24801.579778 eV Total energy + Delta-G solvation = -4332.269672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63324 -41.40735 -40.18644 -38.95809 -37.58328 -36.26495 -35.68109 -35.28120 -33.37488 -32.21852 -31.95669 -29.36675 -28.67979 -26.93795 -26.20692 -24.17514 -23.78140 -21.92469 -21.43653 -21.13543 -20.61386 -20.07883 -19.29580 -18.54475 -17.65290 -17.54427 -17.47863 -17.18705 -16.94300 -16.53733 -15.99983 -15.93218 -15.66432 -15.25583 -15.18813 -14.94323 -14.83785 -14.64793 -14.34273 -14.10215 -13.88077 -13.66414 -13.54711 -13.44127 -13.22712 -12.98860 -12.90968 -12.71795 -12.44089 -12.19793 -12.10814 -12.09732 -11.82718 -11.77463 -11.57716 -11.52277 -11.48716 -11.22819 -11.08892 -10.55464 -10.29600 -10.09003 -9.47483 -8.50743 -6.00961 1.19981 1.35413 1.42956 1.54927 1.61121 1.81819 1.89403 2.09740 2.28525 2.86100 3.15918 3.16536 3.68496 3.71801 3.82720 3.92212 4.14542 4.20709 4.25398 4.27300 4.31386 4.32554 4.41417 4.45362 4.46617 4.49459 4.59687 4.64812 4.72642 4.84826 4.90482 4.92619 4.99516 5.08824 5.15581 5.19589 5.29689 5.32661 5.39521 5.44459 5.56863 5.63235 5.92171 5.93021 6.48142 6.74187 6.91179 7.03779 7.42107 7.51910 7.94421 8.66427 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.001628 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.616014 B =17193.508951 C =17812.753845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.456 3.544 4 O -0.547 6.547 5 C -0.110 4.110 6 C -0.098 4.098 7 C -0.076 4.076 8 C -0.127 4.127 9 C 0.124 3.876 10 N -0.624 5.624 11 C 0.703 3.297 12 O -0.632 6.632 13 N -0.728 5.728 14 C 0.141 3.859 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.106 3.894 27 C -0.127 4.127 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.408 0.592 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.270 -22.163 -8.715 31.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.301 3.699 4 O -0.437 6.437 5 C -0.147 4.147 6 C -0.135 4.135 7 C -0.094 4.094 8 C -0.165 4.165 9 C 0.002 3.998 10 N -0.362 5.362 11 C 0.404 3.596 12 O -0.514 6.514 13 N -0.388 5.388 14 C 0.012 3.988 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.017 4.017 27 C -0.165 4.165 28 H 0.148 0.852 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.068 0.932 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.435 -21.910 -8.521 31.149 hybrid contribution 0.132 1.340 0.220 1.365 sum -20.304 -20.570 -8.301 30.071 Atomic orbital electron populations 1.23490 0.75321 1.05524 1.02243 1.86512 1.24634 1.33350 1.83778 1.24588 0.93586 0.80809 0.70883 1.90678 1.68425 1.37588 1.47058 1.21615 0.84883 0.99964 1.08224 1.21380 0.95042 0.94282 1.02837 1.21154 0.93877 0.95662 0.98728 1.22126 0.93698 1.03014 0.97657 1.21661 0.95421 0.80070 1.02690 1.47345 1.46381 1.15714 1.26713 1.15931 0.79813 0.80737 0.83088 1.90853 1.65321 1.67869 1.27385 1.44928 1.43842 1.17492 1.32521 1.20581 0.92633 0.90961 0.94621 1.20391 0.83299 0.87870 0.86355 1.90460 1.56575 1.75422 1.28736 1.41831 1.35346 1.15828 1.26376 1.19788 1.22049 0.93447 1.11348 0.89528 1.26127 0.95529 1.03499 0.95914 1.69692 1.27005 1.39845 1.19055 0.84804 0.78228 0.76661 0.78228 1.19411 1.19715 1.19593 1.21847 0.94869 0.97167 0.87787 1.21941 0.93825 0.97623 1.03095 0.85222 0.92412 0.92158 0.84709 0.85521 0.92882 0.91304 0.87959 0.87528 0.93286 0.89236 0.90959 0.75132 0.89380 0.89020 0.76710 0.91081 0.91376 0.88841 0.93162 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.37 -4.84 10.57 -51.39 -0.54 -5.38 16 3 C 0.46 6.81 7.96 71.24 0.57 7.38 16 4 O -0.55 -12.28 15.73 21.97 0.35 -11.93 16 5 C -0.11 -0.84 5.57 29.85 0.17 -0.67 16 6 C -0.10 -1.09 3.97 30.59 0.12 -0.96 16 7 C -0.08 -0.77 2.15 -10.66 -0.02 -0.79 16 8 C -0.13 -1.56 5.16 30.78 0.16 -1.40 16 9 C 0.12 2.21 6.43 86.36 0.56 2.76 16 10 N -0.62 -14.91 2.97 -836.89 -2.49 -17.40 16 11 C 0.70 23.42 8.29 179.05 1.49 24.91 16 12 O -0.63 -25.15 15.77 -3.97 -0.06 -25.21 16 13 N -0.73 -25.35 5.44 -482.29 -2.62 -27.97 16 14 C 0.14 5.37 6.16 85.63 0.53 5.89 16 15 C 0.43 20.35 7.85 87.66 0.69 21.03 16 16 O -0.62 -32.45 15.24 -3.08 -0.05 -32.50 16 17 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 18 C -0.34 -18.66 9.68 84.04 0.81 -17.84 16 19 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 20 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 21 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 22 Si 1.00 41.85 29.55 68.60 2.03 43.88 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 C 0.11 1.94 6.39 86.36 0.55 2.50 16 27 C -0.13 -1.85 5.36 30.67 0.16 -1.69 16 28 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.13 0.55 6.53 -2.39 -0.02 0.53 16 33 H 0.05 0.82 8.10 -2.38 -0.02 0.80 16 34 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 0.68 6.52 -2.39 -0.02 0.67 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.65 6.99 -2.39 -0.02 1.63 16 40 H 0.41 13.91 4.93 -92.71 -0.46 13.45 16 41 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 42 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.40 19.48 7.90 -92.70 -0.73 18.74 16 44 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.07 1.49 5.65 -2.38 -0.01 1.48 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -75.52 393.84 2.52 -73.00 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.19 Total: 39.48 kcal Atomic # 6 Polarization: 35.08 SS G_CDS: 7.44 Total: 42.52 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -6.45 Total: -123.85 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -0.31 Total: -75.02 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -75.52 2.52 -73.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520870310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.600 kcal (2) G-P(sol) polarization free energy of solvation -75.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds