Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00214 * 2 1 4 4 H 1.48499 * 109.47147 * 269.99825 * 3 2 1 5 5 H 1.48500 * 109.47098 * 30.00445 * 3 2 1 6 6 H 1.48510 * 109.46977 * 149.99751 * 3 2 1 7 7 C 1.37879 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99979 * 359.72553 * 7 2 1 10 10 O 1.42893 * 110.28725 * 60.95227 * 9 7 2 11 11 C 1.54258 * 110.32538 * 298.81881 * 9 7 2 12 12 C 1.54377 * 105.06526 * 241.10913 * 11 9 7 13 13 N 1.48562 * 104.59198 * 23.84998 * 12 11 9 14 14 C 1.46905 * 110.99807 * 200.96627 * 13 12 11 15 15 C 1.52997 * 109.47061 * 175.66862 * 14 13 12 16 16 H 1.09001 * 109.47236 * 301.83287 * 15 14 13 17 17 O 1.42898 * 109.47476 * 61.83461 * 15 14 13 18 18 C 1.53004 * 109.47210 * 181.83313 * 15 14 13 19 19 C 1.50693 * 109.47294 * 174.99987 * 18 15 14 20 20 C 1.39379 * 119.50552 * 269.72900 * 19 18 15 21 21 C 1.36093 * 120.98690 * 179.73097 * 20 19 18 22 22 C 1.40534 * 119.65423 * 0.55874 * 21 20 19 23 23 C 1.40543 * 121.28359 * 179.72538 * 22 21 20 24 24 C 1.36092 * 119.65170 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.99015 * 0.02562 * 24 23 22 26 26 C 1.36084 * 120.98934 * 359.93607 * 25 24 23 27 27 C 1.40539 * 119.65686 * 0.08677 * 26 25 24 28 28 C 1.36092 * 119.50541 * 89.99831 * 19 18 15 29 29 C 1.48561 * 104.22528 * 320.51842 * 13 12 11 30 30 H 0.97003 * 120.00024 * 0.02562 * 1 2 3 31 31 H 0.96701 * 113.99570 * 300.69141 * 10 9 7 32 32 H 1.09005 * 110.32210 * 0.02562 * 11 9 7 33 33 H 1.09000 * 110.32596 * 122.10357 * 11 9 7 34 34 H 1.08995 * 110.41899 * 142.63060 * 12 11 9 35 35 H 1.09008 * 110.40804 * 265.07685 * 12 11 9 36 36 H 1.09005 * 109.46975 * 295.66467 * 14 13 12 37 37 H 1.08998 * 109.47532 * 55.66347 * 14 13 12 38 38 H 0.96696 * 114.00269 * 59.99394 * 17 15 14 39 39 H 1.09008 * 109.46707 * 294.99834 * 18 15 14 40 40 H 1.09000 * 109.47285 * 54.99406 * 18 15 14 41 41 H 1.08003 * 119.50094 * 359.97438 * 20 19 18 42 42 H 1.08005 * 120.17212 * 180.25677 * 21 20 19 43 43 H 1.07997 * 120.17198 * 359.94707 * 23 22 21 44 44 H 1.08003 * 119.50309 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.50214 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.17161 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.17354 * 0.02562 * 28 19 18 48 48 H 1.09002 * 110.41088 * 280.71073 * 29 13 12 49 49 H 1.08995 * 110.41238 * 158.25988 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 0.0051 10 8 0.4347 -2.6051 -1.1630 11 6 0.3843 -2.6121 1.2763 12 6 0.9176 -3.8576 2.0162 13 7 2.3133 -4.0121 1.5311 14 6 2.7929 -5.3854 1.7361 15 6 4.1892 -5.5340 1.1286 16 1 4.1517 -5.2885 0.0673 17 8 5.0936 -4.6478 1.7909 18 6 4.6699 -6.9762 1.3018 19 6 5.9900 -7.1538 0.5970 20 6 6.0071 -7.5567 -0.7372 21 6 7.1817 -7.7212 -1.4045 22 6 8.3978 -7.4933 -0.7380 23 6 9.6307 -7.6583 -1.3922 24 6 10.7884 -7.4281 -0.7149 25 6 10.7715 -7.0307 0.6209 26 6 9.5968 -6.8601 1.2863 27 6 8.3806 -7.0890 0.6202 28 6 7.1477 -6.9236 1.2743 29 6 2.2349 -3.6862 0.0838 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2183 -1.8975 -1.2519 32 1 0.5037 -1.7233 1.8960 33 1 -0.6637 -2.7481 1.0093 34 1 0.9056 -3.6940 3.0937 35 1 0.3259 -4.7358 1.7575 36 1 2.8367 -5.5993 2.8041 37 1 2.1103 -6.0846 1.2533 38 1 5.1771 -4.8086 2.7408 39 1 4.7925 -7.1934 2.3629 40 1 3.9349 -7.6580 0.8739 41 1 5.0740 -7.7374 -1.2502 42 1 7.1795 -8.0299 -2.4395 43 1 9.6591 -7.9666 -2.4269 44 1 11.7345 -7.5552 -1.2201 45 1 11.7047 -6.8541 1.1351 46 1 9.5991 -6.5514 2.3213 47 1 7.1192 -6.6164 2.3093 48 1 1.8492 -4.5375 -0.4772 49 1 3.2146 -3.3934 -0.2936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = -56.392551 kcal Electronic energy + Delta-G solvation = -29303.035591 eV Core-core repulsion = 25387.218226 eV Total energy + Delta-G solvation = -3915.817366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.53613 -38.84513 -37.55737 -36.26931 -34.54675 -33.02899 -32.07546 -32.01988 -30.49504 -29.59064 -28.09266 -27.93211 -25.48128 -24.31935 -23.42565 -22.19871 -22.01801 -21.28886 -20.29612 -19.24738 -17.50959 -17.07908 -16.95412 -16.52362 -15.89427 -15.48437 -15.15401 -14.84112 -14.74365 -14.60449 -14.23303 -14.16594 -13.73421 -13.57713 -13.54112 -13.42380 -12.77833 -12.68557 -12.44773 -12.12026 -11.95983 -11.74854 -11.62539 -11.48779 -11.27940 -11.11660 -11.08984 -10.93380 -10.90384 -10.68374 -10.57256 -10.38650 -10.19531 -10.05891 -9.85208 -9.66618 -8.98658 -8.58831 -8.50134 -8.07668 -7.96412 -7.76718 -6.10236 -4.14961 0.43722 0.89288 1.96379 2.85746 3.31235 3.37586 3.44016 3.98277 4.32003 4.41920 4.43878 4.63657 4.67985 4.73595 4.79131 4.91112 4.98876 5.09750 5.12828 5.20755 5.24524 5.28380 5.35289 5.43091 5.50379 5.62107 5.68848 5.73551 5.82253 5.85578 5.96066 5.98432 6.09158 6.11914 6.14397 6.20965 6.23716 6.32035 6.40841 6.45741 6.55711 6.56547 6.72290 6.90509 6.93033 7.10734 7.26190 7.59618 7.70927 7.73380 7.91726 7.96616 8.28818 8.88550 9.48474 9.57265 10.97256 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.002499 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.337258 B =11199.968772 C =12042.729416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.248 3.752 10 O -0.596 6.596 11 C -0.120 4.120 12 C 0.031 3.969 13 N -0.488 5.488 14 C 0.013 3.987 15 C 0.118 3.882 16 H 0.100 0.900 17 O -0.538 6.538 18 C -0.116 4.116 19 C -0.067 4.067 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.056 4.056 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.048 4.048 28 C -0.092 4.092 29 C 0.054 3.946 30 H 0.264 0.736 31 H 0.382 0.618 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.365 0.635 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.027 0.973 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.382 -17.851 3.033 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.208 3.792 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.097 4.097 13 N -0.213 5.213 14 C -0.116 4.116 15 C 0.058 3.942 16 H 0.118 0.882 17 O -0.341 6.341 18 C -0.154 4.154 19 C -0.067 4.067 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.048 4.048 28 C -0.110 4.110 29 C -0.074 4.074 30 H 0.074 0.926 31 H 0.233 0.767 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.211 0.789 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.045 0.955 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.031 -17.670 2.622 23.346 hybrid contribution -0.633 0.615 0.275 0.925 sum 14.397 -17.055 2.897 22.507 Atomic orbital electron populations 1.69701 1.05880 1.27181 1.51601 1.25008 0.94983 0.99399 0.94285 0.86484 0.79993 0.82792 0.78112 1.20663 1.21294 1.19688 1.21668 0.93653 0.90312 1.49633 0.91894 1.19268 0.86381 0.91688 0.81820 1.86075 1.53265 1.54336 1.46826 1.22835 0.98203 0.95522 0.99283 1.23172 0.88543 0.98412 0.99571 1.65344 1.20790 1.20141 1.14977 1.22999 0.96344 0.91576 1.00725 1.21890 0.87435 0.86743 0.98158 0.88247 1.86700 1.64561 1.58307 1.24523 1.21431 0.94498 0.98745 1.00764 1.19419 0.94915 0.98232 0.94097 1.20805 0.98331 0.99313 0.94144 1.20978 0.91598 1.00477 0.99590 1.18100 0.93833 1.00284 0.93379 1.21025 0.91720 1.00001 0.99638 1.20818 0.98207 1.00200 0.94819 1.20825 0.98100 1.00157 0.94875 1.21039 0.91694 0.99618 0.99844 1.18094 0.93850 0.99621 0.93276 1.20825 0.90866 0.99442 0.99893 1.22999 1.00329 0.97122 0.86948 0.92569 0.76736 0.90631 0.93143 0.91661 0.95564 0.91014 0.94635 0.78873 0.90542 0.90065 0.85935 0.85640 0.85771 0.86212 0.86170 0.85652 0.85684 0.95508 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 10.80 55.43 0.60 -24.07 16 2 C 0.06 1.75 5.01 -17.82 -0.09 1.66 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.30 8.10 -34.44 -0.28 -14.58 16 8 H 0.06 1.80 7.53 -52.49 -0.40 1.40 16 9 C 0.25 6.33 1.06 -90.39 -0.10 6.23 16 10 O -0.60 -15.83 12.95 -35.23 -0.46 -16.29 16 11 C -0.12 -2.83 5.55 -25.35 -0.14 -2.97 16 12 C 0.03 0.60 6.49 -2.18 -0.01 0.59 16 13 N -0.49 -9.50 5.34 -229.96 -1.23 -10.73 16 14 C 0.01 0.19 4.56 -3.82 -0.02 0.17 16 15 C 0.12 1.60 2.79 -26.73 -0.07 1.52 16 16 H 0.10 1.58 6.85 -51.93 -0.36 1.22 16 17 O -0.54 -7.99 12.69 -35.23 -0.45 -8.44 16 18 C -0.12 -1.20 5.00 -27.88 -0.14 -1.34 16 19 C -0.07 -0.76 4.95 -104.97 -0.52 -1.28 16 20 C -0.11 -1.21 9.58 -39.93 -0.38 -1.60 16 21 C -0.11 -1.19 9.77 -39.49 -0.39 -1.57 16 22 C -0.06 -0.65 5.74 -106.83 -0.61 -1.27 16 23 C -0.11 -1.04 9.77 -39.48 -0.39 -1.43 16 24 C -0.12 -1.10 9.95 -39.93 -0.40 -1.50 16 25 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 26 C -0.10 -1.06 9.77 -39.49 -0.39 -1.44 16 27 C -0.05 -0.57 5.74 -106.83 -0.61 -1.19 16 28 C -0.09 -1.05 9.03 -39.48 -0.36 -1.41 16 29 C 0.05 1.19 4.63 -2.18 -0.01 1.18 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.38 10.26 7.31 45.56 0.33 10.59 16 32 H 0.07 1.96 7.22 -51.93 -0.38 1.58 16 33 H 0.05 1.20 7.98 -51.93 -0.41 0.78 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.48 7.91 -51.92 -0.41 0.07 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.50 7.97 -51.93 -0.41 0.09 16 38 H 0.37 4.02 9.05 45.56 0.41 4.43 16 39 H 0.08 0.66 8.07 -51.92 -0.42 0.24 16 40 H 0.08 0.75 8.08 -51.93 -0.42 0.34 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 46 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 48 H 0.03 0.58 7.91 -51.93 -0.41 0.16 16 49 H 0.08 1.83 7.16 -51.93 -0.37 1.46 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -31.27 394.12 -12.09 -43.36 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -6.18 Total: 15.46 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -5.30 Total: -21.72 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.63 Total: -34.80 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.90 Total: -24.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.27 -12.09 -43.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.032 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds