Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00214 * 2 1 4 4 H 1.48499 * 109.47147 * 269.99825 * 3 2 1 5 5 H 1.48500 * 109.47098 * 30.00445 * 3 2 1 6 6 H 1.48510 * 109.46977 * 149.99751 * 3 2 1 7 7 C 1.37879 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99979 * 359.72553 * 7 2 1 10 10 O 1.42893 * 110.28725 * 60.95227 * 9 7 2 11 11 C 1.54258 * 110.32538 * 298.81881 * 9 7 2 12 12 C 1.54377 * 105.06526 * 241.10913 * 11 9 7 13 13 N 1.48562 * 104.59198 * 23.84998 * 12 11 9 14 14 C 1.46905 * 110.99807 * 200.96627 * 13 12 11 15 15 C 1.52997 * 109.47061 * 175.66862 * 14 13 12 16 16 H 1.09001 * 109.47236 * 301.83287 * 15 14 13 17 17 O 1.42898 * 109.47476 * 61.83461 * 15 14 13 18 18 C 1.53004 * 109.47210 * 181.83313 * 15 14 13 19 19 C 1.50693 * 109.47294 * 174.99987 * 18 15 14 20 20 C 1.39379 * 119.50552 * 269.72900 * 19 18 15 21 21 C 1.36093 * 120.98690 * 179.73097 * 20 19 18 22 22 C 1.40534 * 119.65423 * 0.55874 * 21 20 19 23 23 C 1.40543 * 121.28359 * 179.72538 * 22 21 20 24 24 C 1.36092 * 119.65170 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.99015 * 0.02562 * 24 23 22 26 26 C 1.36084 * 120.98934 * 359.93607 * 25 24 23 27 27 C 1.40539 * 119.65686 * 0.08677 * 26 25 24 28 28 C 1.36092 * 119.50541 * 89.99831 * 19 18 15 29 29 C 1.48561 * 104.22528 * 320.51842 * 13 12 11 30 30 H 0.97003 * 120.00024 * 0.02562 * 1 2 3 31 31 H 0.96701 * 113.99570 * 300.69141 * 10 9 7 32 32 H 1.09005 * 110.32210 * 0.02562 * 11 9 7 33 33 H 1.09000 * 110.32596 * 122.10357 * 11 9 7 34 34 H 1.08995 * 110.41899 * 142.63060 * 12 11 9 35 35 H 1.09008 * 110.40804 * 265.07685 * 12 11 9 36 36 H 1.09005 * 109.46975 * 295.66467 * 14 13 12 37 37 H 1.08998 * 109.47532 * 55.66347 * 14 13 12 38 38 H 0.96696 * 114.00269 * 59.99394 * 17 15 14 39 39 H 1.09008 * 109.46707 * 294.99834 * 18 15 14 40 40 H 1.09000 * 109.47285 * 54.99406 * 18 15 14 41 41 H 1.08003 * 119.50094 * 359.97438 * 20 19 18 42 42 H 1.08005 * 120.17212 * 180.25677 * 21 20 19 43 43 H 1.07997 * 120.17198 * 359.94707 * 23 22 21 44 44 H 1.08003 * 119.50309 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.50214 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.17161 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.17354 * 0.02562 * 28 19 18 48 48 H 1.09002 * 110.41088 * 280.71073 * 29 13 12 49 49 H 1.08995 * 110.41238 * 158.25988 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 0.0051 10 8 0.4347 -2.6051 -1.1630 11 6 0.3843 -2.6121 1.2763 12 6 0.9176 -3.8576 2.0162 13 7 2.3133 -4.0121 1.5311 14 6 2.7929 -5.3854 1.7361 15 6 4.1892 -5.5340 1.1286 16 1 4.1517 -5.2885 0.0673 17 8 5.0936 -4.6478 1.7909 18 6 4.6699 -6.9762 1.3018 19 6 5.9900 -7.1538 0.5970 20 6 6.0071 -7.5567 -0.7372 21 6 7.1817 -7.7212 -1.4045 22 6 8.3978 -7.4933 -0.7380 23 6 9.6307 -7.6583 -1.3922 24 6 10.7884 -7.4281 -0.7149 25 6 10.7715 -7.0307 0.6209 26 6 9.5968 -6.8601 1.2863 27 6 8.3806 -7.0890 0.6202 28 6 7.1477 -6.9236 1.2743 29 6 2.2349 -3.6862 0.0838 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2183 -1.8975 -1.2519 32 1 0.5037 -1.7233 1.8960 33 1 -0.6637 -2.7481 1.0093 34 1 0.9056 -3.6940 3.0937 35 1 0.3259 -4.7358 1.7575 36 1 2.8367 -5.5993 2.8041 37 1 2.1103 -6.0846 1.2533 38 1 5.1771 -4.8086 2.7408 39 1 4.7925 -7.1934 2.3629 40 1 3.9349 -7.6580 0.8739 41 1 5.0740 -7.7374 -1.2502 42 1 7.1795 -8.0299 -2.4395 43 1 9.6591 -7.9666 -2.4269 44 1 11.7345 -7.5552 -1.2201 45 1 11.7047 -6.8541 1.1351 46 1 9.5991 -6.5514 2.3213 47 1 7.1192 -6.6164 2.3093 48 1 1.8492 -4.5375 -0.4772 49 1 3.2146 -3.3934 -0.2936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = -77.822940 kcal Electronic energy + Delta-G solvation = -29303.964883 eV Core-core repulsion = 25387.218226 eV Total energy + Delta-G solvation = -3916.746657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30774 -40.31060 -38.77303 -37.26945 -36.26443 -34.15995 -33.82508 -32.99654 -31.84385 -30.39248 -29.77681 -29.22000 -27.05937 -25.82412 -24.19429 -23.29028 -22.79939 -22.31342 -21.88469 -21.04943 -19.03181 -18.28575 -17.86563 -17.53639 -16.99563 -16.81826 -16.69353 -16.52665 -15.84233 -15.62856 -15.54427 -15.49576 -15.03613 -14.48536 -14.46672 -14.22521 -14.19672 -14.06063 -13.82132 -13.51810 -13.40591 -13.19773 -12.89268 -12.79754 -12.66330 -12.46701 -12.42003 -12.32261 -12.20261 -12.08893 -11.84999 -11.82229 -11.66963 -11.56248 -10.94844 -10.89760 -10.71057 -10.59335 -10.12948 -9.38748 -9.27176 -8.73178 -8.19301 -6.31430 -0.32260 0.10652 1.18214 1.39339 1.40926 1.51834 2.09458 2.40843 2.95108 3.10386 3.24175 3.59880 3.68797 3.77861 3.95495 3.96067 4.01477 4.10658 4.14590 4.26716 4.28713 4.35727 4.36716 4.41303 4.42664 4.50408 4.52340 4.57123 4.63652 4.67777 4.74259 4.85281 4.87771 4.96896 5.06610 5.08590 5.17600 5.22878 5.26878 5.36873 5.38338 5.40100 5.59528 5.67059 5.68402 5.75175 5.78742 5.98289 5.99378 6.15740 6.19155 6.29956 6.73021 7.04479 7.36379 7.44285 8.86406 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.002499 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.337258 B =11199.968772 C =12042.729416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.044 0.956 9 C 0.229 3.771 10 O -0.603 6.603 11 C -0.113 4.113 12 C 0.040 3.960 13 N -0.500 5.500 14 C 0.013 3.987 15 C 0.125 3.875 16 H 0.069 0.931 17 O -0.562 6.562 18 C -0.102 4.102 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.073 4.073 28 C -0.102 4.102 29 C 0.068 3.932 30 H 0.268 0.732 31 H 0.377 0.623 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.382 0.618 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.031 0.969 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.520 -18.944 4.116 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.063 0.937 9 C 0.190 3.810 10 O -0.412 6.412 11 C -0.151 4.151 12 C -0.088 4.088 13 N -0.225 5.225 14 C -0.115 4.115 15 C 0.065 3.935 16 H 0.087 0.913 17 O -0.368 6.368 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.073 4.073 28 C -0.119 4.119 29 C -0.060 4.060 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.230 0.770 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.156 0.844 48 H 0.049 0.951 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.168 -18.783 3.720 25.060 hybrid contribution -0.910 0.959 -0.082 1.324 sum 15.258 -17.824 3.637 23.743 Atomic orbital electron populations 1.69769 1.06579 1.27937 1.51208 1.25641 0.95857 1.02035 0.93826 0.85602 0.78705 0.79440 0.78130 1.20270 1.20281 1.20064 1.21820 0.93000 0.92097 1.50849 0.93735 1.19558 0.87093 0.92288 0.82096 1.86069 1.53268 1.54006 1.47821 1.22609 0.97577 0.96536 0.98420 1.23097 0.88653 0.96923 1.00114 1.65286 1.20735 1.23821 1.12614 1.23142 0.96704 0.88899 1.02777 1.21735 0.86965 0.88499 0.96311 0.91325 1.86659 1.64859 1.59204 1.26080 1.21306 0.94101 0.96394 1.02222 1.19596 0.95466 0.98655 0.94356 1.21050 0.98932 0.99798 0.94535 1.21255 0.91521 1.00306 1.00479 1.18435 0.94808 1.00882 0.93817 1.21318 0.91483 1.00205 1.00672 1.21200 0.99047 0.99103 0.94963 1.21204 0.98815 0.99071 0.95121 1.21309 0.91601 1.00028 1.00777 1.18428 0.94761 1.00291 0.93804 1.21061 0.90885 0.99368 1.00633 1.22709 0.98184 0.95947 0.89164 0.92288 0.77383 0.93535 0.93983 0.89612 0.93626 0.88082 0.93433 0.77000 0.88240 0.88816 0.85030 0.83991 0.84002 0.83662 0.83713 0.84153 0.84362 0.95077 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.52 10.80 21.45 0.23 -50.29 16 2 C 0.03 1.43 5.01 84.66 0.42 1.85 16 3 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.54 -30.74 8.10 25.60 0.21 -30.54 16 8 H 0.04 2.63 7.53 -2.91 -0.02 2.61 16 9 C 0.23 11.89 1.06 -10.64 -0.01 11.88 16 10 O -0.60 -32.74 12.95 -148.98 -1.93 -34.66 16 11 C -0.11 -5.35 5.55 31.49 0.17 -5.18 16 12 C 0.04 1.48 6.49 86.45 0.56 2.05 16 13 N -0.50 -18.86 5.34 -881.47 -4.71 -23.57 16 14 C 0.01 0.35 4.56 86.30 0.39 0.75 16 15 C 0.12 3.24 2.79 30.59 0.09 3.33 16 16 H 0.07 2.21 6.85 -2.39 -0.02 2.19 16 17 O -0.56 -16.22 12.69 -148.98 -1.89 -18.11 16 18 C -0.10 -1.91 5.00 29.85 0.15 -1.76 16 19 C -0.08 -1.79 4.95 -20.09 -0.10 -1.89 16 20 C -0.13 -2.80 9.58 22.05 0.21 -2.59 16 21 C -0.12 -2.57 9.77 22.33 0.22 -2.35 16 22 C -0.08 -1.83 5.74 -21.30 -0.12 -1.96 16 23 C -0.12 -2.24 9.77 22.33 0.22 -2.02 16 24 C -0.13 -2.04 9.95 22.04 0.22 -1.82 16 25 C -0.12 -2.06 9.95 22.04 0.22 -1.84 16 26 C -0.12 -2.31 9.77 22.33 0.22 -2.09 16 27 C -0.07 -1.70 5.74 -21.30 -0.12 -1.82 16 28 C -0.10 -2.25 9.03 22.33 0.20 -2.05 16 29 C 0.07 3.05 4.63 86.45 0.40 3.45 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.38 20.77 7.31 -74.06 -0.54 20.23 16 32 H 0.05 2.44 7.22 -2.38 -0.02 2.42 16 33 H 0.04 2.01 7.98 -2.39 -0.02 1.99 16 34 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.05 1.54 7.91 -2.38 -0.02 1.52 16 36 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.05 1.20 7.97 -2.39 -0.02 1.18 16 38 H 0.38 7.73 9.05 -74.06 -0.67 7.06 16 39 H 0.10 1.40 8.07 -2.38 -0.02 1.38 16 40 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 41 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 43 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 47 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 48 H 0.03 1.34 7.91 -2.39 -0.02 1.32 16 49 H 0.06 2.81 7.16 -2.39 -0.02 2.80 16 Total: -1.00 -68.63 394.12 -2.98 -71.61 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: -0.25 Total: 43.08 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.55 Total: -34.60 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -4.48 Total: -73.86 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -3.82 Total: -52.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.63 -2.98 -71.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.216 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds