Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00295 * 2 1 4 4 H 1.48492 * 109.47063 * 275.00075 * 3 2 1 5 5 H 1.48505 * 109.46751 * 34.99835 * 3 2 1 6 6 H 1.48495 * 109.47139 * 154.99626 * 3 2 1 7 7 C 1.37881 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99700 * 184.96526 * 7 2 1 9 9 C 1.50701 * 120.00386 * 4.96599 * 7 2 1 10 10 O 1.42895 * 110.27133 * 296.92439 * 9 7 2 11 11 C 1.54594 * 110.30848 * 59.12158 * 9 7 2 12 12 C 1.54932 * 102.92224 * 140.87689 * 11 9 7 13 13 N 1.48813 * 103.34688 * 322.68779 * 12 11 9 14 14 C 1.46905 * 111.18412 * 159.50754 * 13 12 11 15 15 C 1.52994 * 109.47128 * 52.66232 * 14 13 12 16 16 H 1.09004 * 109.47444 * 305.00122 * 15 14 13 17 17 O 1.42899 * 109.47215 * 65.00162 * 15 14 13 18 18 C 1.53005 * 109.47186 * 185.00048 * 15 14 13 19 19 C 1.50701 * 109.47103 * 174.99859 * 18 15 14 20 20 C 1.39372 * 119.50436 * 90.00217 * 19 18 15 21 21 C 1.36096 * 120.99457 * 179.97438 * 20 19 18 22 22 C 1.40541 * 119.64770 * 0.02562 * 21 20 19 23 23 C 1.40544 * 121.28894 * 180.02562 * 22 21 20 24 24 C 1.36097 * 119.65333 * 179.97438 * 23 22 21 25 25 C 1.39370 * 120.99158 * 359.97438 * 24 23 22 26 26 C 1.36102 * 120.98736 * 0.02562 * 25 24 23 27 27 C 1.40532 * 119.65299 * 359.95683 * 26 25 24 28 28 C 1.36088 * 119.50628 * 269.72951 * 19 18 15 29 29 C 1.47902 * 105.67852 * 38.97996 * 13 12 11 30 30 H 0.96998 * 120.00209 * 359.97438 * 1 2 3 31 31 H 0.96701 * 113.99916 * 57.91133 * 10 9 7 32 32 H 1.09000 * 110.72137 * 259.23260 * 11 9 7 33 33 H 1.08998 * 110.72475 * 22.33621 * 11 9 7 34 34 H 1.09000 * 110.66832 * 81.02002 * 12 11 9 35 35 H 1.09002 * 110.66726 * 203.98174 * 12 11 9 36 36 H 1.08997 * 109.47090 * 172.66142 * 14 13 12 37 37 H 1.09005 * 109.46828 * 292.66419 * 14 13 12 38 38 H 0.96694 * 114.00060 * 60.00040 * 17 15 14 39 39 H 1.08998 * 109.46864 * 295.00197 * 18 15 14 40 40 H 1.08999 * 109.47149 * 55.00029 * 18 15 14 41 41 H 1.08001 * 119.50641 * 359.97438 * 20 19 18 42 42 H 1.07997 * 120.18046 * 180.02562 * 21 20 19 43 43 H 1.07997 * 120.17555 * 359.95802 * 23 22 21 44 44 H 1.07997 * 119.50240 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.50816 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.16881 * 179.97438 * 26 25 24 47 47 H 1.07993 * 120.17663 * 359.97438 * 28 19 18 48 48 H 1.08998 * 109.91127 * 215.45373 * 29 13 12 49 49 H 1.08999 * 109.92081 * 94.35792 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1073 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0044 -1.1941 0.0005 8 1 3.0815 -1.1959 0.0815 9 6 1.2552 -2.4968 -0.1119 10 8 0.3947 -2.6719 1.0155 11 6 0.4385 -2.5346 -1.4239 12 6 0.6070 -4.0010 -1.8948 13 7 2.0139 -4.3197 -1.5293 14 6 2.2248 -5.7711 -1.4450 15 6 1.7429 -6.4324 -2.7377 16 1 0.7055 -6.1540 -2.9235 17 8 2.5561 -5.9951 -3.8283 18 6 1.8464 -7.9529 -2.6020 19 6 1.2583 -8.6076 -3.8254 20 6 2.0779 -8.8797 -4.9193 21 6 1.5789 -9.4704 -6.0392 22 6 0.2168 -9.8120 -6.0969 23 6 -0.3347 -10.4236 -7.2358 24 6 -1.6581 -10.7407 -7.2555 25 6 -2.4777 -10.4686 -6.1616 26 6 -1.9785 -9.8774 -5.0419 27 6 -0.6165 -9.5357 -4.9844 28 6 -0.0639 -8.9293 -3.8433 29 6 2.2424 -3.6738 -0.2186 30 1 -0.4850 0.8400 0.0004 31 1 -0.2491 -1.9601 1.1332 32 1 -0.6105 -2.3093 -1.2319 33 1 0.8526 -1.8415 -2.1561 34 1 -0.0835 -4.6570 -1.3647 35 1 0.4590 -4.0786 -2.9719 36 1 3.2861 -5.9765 -1.3055 37 1 1.6631 -6.1713 -0.6008 38 1 3.4938 -6.2096 -3.7305 39 1 2.8938 -8.2385 -2.5050 40 1 1.2980 -8.2769 -1.7175 41 1 3.1249 -8.6178 -4.8777 42 1 2.2260 -9.6756 -6.8791 43 1 0.2882 -10.6406 -8.0909 44 1 -2.0793 -11.2110 -8.1318 45 1 -3.5247 -10.7300 -6.2033 46 1 -2.6256 -9.6722 -4.2020 47 1 -0.6859 -8.7169 -2.9864 48 1 3.2667 -3.3058 -0.1596 49 1 2.0577 -4.3875 0.5843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = -57.936663 kcal Electronic energy + Delta-G solvation = -29090.155348 eV Core-core repulsion = 25174.271024 eV Total energy + Delta-G solvation = -3915.884323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59098 -38.90053 -37.59858 -36.32070 -34.49333 -33.16301 -32.08906 -32.01239 -30.48970 -29.64218 -28.38183 -27.86244 -25.65440 -23.99199 -23.44548 -22.43122 -22.11855 -21.49941 -20.01739 -19.31749 -17.57051 -17.16614 -17.05584 -16.57102 -15.79817 -15.69846 -14.94877 -14.92769 -14.80891 -14.70495 -14.36968 -13.93747 -13.86632 -13.66961 -13.53674 -13.48298 -13.03654 -12.82243 -12.27387 -12.11037 -12.02472 -11.73382 -11.61151 -11.51389 -11.32976 -11.20977 -11.11422 -10.98346 -10.92882 -10.60220 -10.54790 -10.43858 -10.28385 -10.15922 -9.97530 -9.69522 -9.10915 -8.64030 -8.53857 -8.08249 -8.01974 -7.72926 -6.17157 -4.22768 0.37544 0.85131 1.89943 2.81417 3.26177 3.33360 3.37207 3.93072 4.26899 4.35564 4.41177 4.57508 4.65325 4.67418 4.72627 4.89425 4.97388 5.04116 5.08992 5.11063 5.18760 5.22705 5.29230 5.39261 5.49724 5.59528 5.64193 5.75833 5.79868 5.83190 5.90768 6.00779 6.06813 6.08268 6.11484 6.22040 6.27290 6.30490 6.40876 6.42714 6.50097 6.55647 6.66994 6.85126 6.96053 7.10257 7.32772 7.56214 7.67010 7.73485 7.85172 7.88326 8.19909 8.79117 9.42674 9.53709 10.90552 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.002117 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.366310 B =13220.685477 C =13609.405175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.116 4.116 12 C 0.031 3.969 13 N -0.503 5.503 14 C 0.015 3.985 15 C 0.116 3.884 16 H 0.100 0.900 17 O -0.542 6.542 18 C -0.118 4.118 19 C -0.063 4.063 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.055 4.055 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.105 4.105 27 C -0.048 4.048 28 C -0.110 4.110 29 C 0.053 3.947 30 H 0.266 0.734 31 H 0.382 0.618 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.368 0.632 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.077 0.923 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -21.903 -11.277 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.406 6.406 11 C -0.155 4.155 12 C -0.096 4.096 13 N -0.227 5.227 14 C -0.114 4.114 15 C 0.056 3.944 16 H 0.117 0.883 17 O -0.346 6.346 18 C -0.156 4.156 19 C -0.063 4.063 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.055 4.055 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.048 4.048 28 C -0.128 4.128 29 C -0.074 4.074 30 H 0.076 0.924 31 H 0.233 0.767 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.214 0.786 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.096 0.904 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.542 -21.916 -11.807 24.900 hybrid contribution 0.000 0.901 0.754 1.175 sum -0.542 -21.015 -11.053 23.751 Atomic orbital electron populations 1.69682 1.05954 1.27343 1.50829 1.25018 0.94986 0.99459 0.93946 0.86455 0.79916 0.82842 0.78050 1.20556 1.21211 1.19793 1.21687 0.93789 0.90660 1.50463 0.92041 1.19373 0.86248 0.91311 0.82823 1.86085 1.51980 1.51826 1.50685 1.22926 1.00692 0.92163 0.99672 1.23340 0.88194 0.98656 0.99408 1.64874 1.23352 1.06773 1.27738 1.23014 1.01155 0.90684 0.96569 1.21974 0.96299 0.89605 0.86488 0.88268 1.86646 1.21769 1.82640 1.43575 1.21442 1.01898 0.96454 0.95779 1.19448 0.93724 0.97374 0.95743 1.20723 0.99932 0.97700 0.92872 1.20987 0.93983 0.99418 0.98399 1.18100 0.93836 0.99513 0.94095 1.21024 0.95605 0.98632 0.97160 1.20824 0.94006 1.00584 0.98583 1.20834 0.99898 0.99476 0.93662 1.21059 0.94101 0.98598 0.98585 1.18066 0.93675 0.99081 0.93988 1.20909 0.94958 0.99359 0.97532 1.22886 1.00526 0.96042 0.87955 0.92423 0.76712 0.91758 0.91389 0.95246 0.91397 0.90912 0.94392 0.78619 0.90391 0.89973 0.85972 0.85686 0.85766 0.86184 0.86122 0.85623 0.85645 0.90438 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 10.89 55.43 0.60 -23.69 16 2 C 0.07 1.82 5.22 -17.82 -0.09 1.72 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.38 8.12 -34.44 -0.28 -14.66 16 8 H 0.06 1.68 7.36 -52.48 -0.39 1.29 16 9 C 0.24 6.11 0.99 -90.42 -0.09 6.02 16 10 O -0.60 -15.69 12.94 -35.23 -0.46 -16.14 16 11 C -0.12 -2.76 5.32 -24.87 -0.13 -2.89 16 12 C 0.03 0.63 5.10 -1.74 -0.01 0.62 16 13 N -0.50 -9.73 5.35 -230.21 -1.23 -10.96 16 14 C 0.01 0.22 4.67 -3.82 -0.02 0.20 16 15 C 0.12 1.49 2.69 -26.73 -0.07 1.42 16 16 H 0.10 1.46 6.54 -51.93 -0.34 1.12 16 17 O -0.54 -7.35 12.77 -35.23 -0.45 -7.80 16 18 C -0.12 -1.17 5.00 -27.88 -0.14 -1.31 16 19 C -0.06 -0.68 4.93 -104.97 -0.52 -1.20 16 20 C -0.09 -0.96 9.27 -39.93 -0.37 -1.33 16 21 C -0.11 -1.10 9.77 -39.48 -0.39 -1.49 16 22 C -0.06 -0.61 5.74 -106.83 -0.61 -1.22 16 23 C -0.11 -0.98 9.77 -39.48 -0.39 -1.37 16 24 C -0.12 -1.04 9.95 -39.93 -0.40 -1.43 16 25 C -0.12 -1.06 9.95 -39.93 -0.40 -1.45 16 26 C -0.11 -1.04 9.77 -39.49 -0.39 -1.43 16 27 C -0.05 -0.55 5.74 -106.83 -0.61 -1.16 16 28 C -0.11 -1.22 9.37 -39.49 -0.37 -1.59 16 29 C 0.05 1.18 6.16 -2.75 -0.02 1.16 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.38 10.20 7.29 45.56 0.33 10.53 16 32 H 0.06 1.58 7.99 -51.93 -0.41 1.17 16 33 H 0.07 1.74 7.85 -51.93 -0.41 1.33 16 34 H 0.03 0.57 8.01 -51.93 -0.42 0.16 16 35 H 0.07 1.31 7.59 -51.93 -0.39 0.92 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 38 H 0.37 3.66 9.04 45.56 0.41 4.07 16 39 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.08 0.76 8.07 -51.93 -0.42 0.35 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 48 H 0.08 1.72 7.39 -51.93 -0.38 1.34 16 49 H 0.03 0.72 7.38 -51.93 -0.38 0.34 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -30.58 393.59 -12.05 -42.64 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -6.14 Total: 15.41 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -5.29 Total: -21.39 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.63 Total: -34.65 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.91 Total: -23.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.58 -12.05 -42.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.300 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds