Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48500 * 109.47167 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47222 * 29.99941 * 3 2 1 6 6 H 1.48499 * 109.46971 * 149.99753 * 3 2 1 7 7 C 1.37878 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00037 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.76738 * 303.20028 * 9 7 2 11 11 C 1.55397 * 110.85009 * 66.46547 * 9 7 2 12 12 C 1.54905 * 101.74627 * 153.85767 * 11 9 7 13 13 N 1.47846 * 104.79599 * 323.02184 * 12 11 9 14 14 C 1.46904 * 111.00001 * 146.36142 * 13 12 11 15 15 C 1.53003 * 109.47053 * 173.32664 * 14 13 12 16 16 H 1.09000 * 109.46832 * 58.43394 * 15 14 13 17 17 O 1.42892 * 109.46729 * 298.43141 * 15 14 13 18 18 C 1.53004 * 109.46838 * 178.43440 * 15 14 13 19 19 C 1.50699 * 109.46904 * 185.00112 * 18 15 14 20 20 C 1.39372 * 119.50733 * 89.99525 * 19 18 15 21 21 C 1.36098 * 120.98948 * 179.97438 * 20 19 18 22 22 C 1.40538 * 119.65119 * 0.02646 * 21 20 19 23 23 C 1.40539 * 121.28047 * 180.02562 * 22 21 20 24 24 C 1.36096 * 119.65103 * 180.02562 * 23 22 21 25 25 C 1.39380 * 120.99019 * 359.94690 * 24 23 22 26 26 C 1.36088 * 120.98503 * 0.03419 * 25 24 23 27 27 C 1.40536 * 119.65938 * 359.97438 * 26 25 24 28 28 C 1.36091 * 119.50182 * 269.72834 * 19 18 15 29 29 C 1.47447 * 108.56716 * 24.09424 * 13 12 11 30 30 H 0.97001 * 119.99694 * 359.97438 * 1 2 3 31 31 H 0.96692 * 114.00047 * 56.80004 * 10 9 7 32 32 H 1.08999 * 110.86832 * 35.77394 * 11 9 7 33 33 H 1.08996 * 111.06050 * 272.03193 * 11 9 7 34 34 H 1.08997 * 110.37687 * 204.18985 * 12 11 9 35 35 H 1.09008 * 110.37077 * 81.84935 * 12 11 9 36 36 H 1.09004 * 109.47153 * 293.32728 * 14 13 12 37 37 H 1.09001 * 109.47025 * 53.32412 * 14 13 12 38 38 H 0.96697 * 114.00329 * 299.99596 * 17 15 14 39 39 H 1.09005 * 109.46940 * 304.99984 * 18 15 14 40 40 H 1.08998 * 109.46971 * 64.99839 * 18 15 14 41 41 H 1.08000 * 119.50728 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.17181 * 180.02562 * 21 20 19 43 43 H 1.08000 * 120.17700 * 359.95019 * 23 22 21 44 44 H 1.07998 * 119.50594 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.50613 * 180.02562 * 25 24 23 46 46 H 1.08007 * 120.16954 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.17646 * 0.02562 * 28 19 18 48 48 H 1.08999 * 109.88819 * 118.41698 * 29 13 12 49 49 H 1.08996 * 109.88560 * 239.44278 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3636 -2.5718 1.1183 11 6 0.4727 -2.6884 -1.3311 12 6 0.3766 -4.2317 -1.4236 13 7 1.6660 -4.7228 -0.8923 14 6 1.4919 -5.9974 -0.1830 15 6 2.8622 -6.5558 0.2062 16 1 3.3842 -5.8331 0.8334 17 8 3.6284 -6.8032 -0.9743 18 6 2.6792 -7.8636 0.9790 19 6 4.0192 -8.3496 1.4681 20 6 4.4822 -7.9433 2.7183 21 6 5.6874 -8.3643 3.1900 22 6 6.4796 -9.2212 2.4070 23 6 7.7292 -9.6772 2.8606 24 6 8.4693 -10.5060 2.0747 25 6 8.0065 -10.9119 0.8242 26 6 6.8015 -10.4908 0.3526 27 6 6.0090 -9.6342 1.1356 28 6 4.7565 -9.1832 0.6848 29 6 2.2282 -3.6934 0.0012 30 1 -0.4850 0.8401 0.0004 31 1 -0.2713 -1.8440 1.1643 32 1 1.0357 -2.2813 -2.1711 33 1 -0.5182 -2.2382 -1.2731 34 1 0.2503 -4.5427 -2.4606 35 1 -0.4493 -4.5977 -0.8135 36 1 0.8971 -5.8348 0.7158 37 1 0.9812 -6.7081 -0.8329 38 1 3.2232 -7.4385 -1.5803 39 1 2.0213 -7.6930 1.8312 40 1 2.2376 -8.6141 0.3235 41 1 3.8756 -7.2844 3.3219 42 1 6.0332 -8.0415 4.1609 43 1 8.1008 -9.3706 3.8272 44 1 9.4290 -10.8553 2.4257 45 1 8.6134 -11.5704 0.2205 46 1 6.4555 -10.8140 -0.6182 47 1 4.3832 -9.4929 -0.2802 48 1 2.3259 -4.0921 1.0109 49 1 3.2032 -3.3749 -0.3675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = -59.673406 kcal Electronic energy + Delta-G solvation = -29193.881314 eV Core-core repulsion = 25277.921680 eV Total energy + Delta-G solvation = -3915.959634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.53565 -38.84813 -37.56667 -36.26321 -34.43111 -33.02951 -32.06780 -32.05010 -30.47614 -29.58941 -28.22992 -28.00381 -25.53450 -24.30919 -23.42274 -22.18362 -22.01303 -21.26547 -20.20656 -19.25879 -17.49960 -17.13734 -17.06245 -16.52720 -15.86240 -15.53018 -15.06225 -14.89105 -14.82590 -14.57648 -14.17136 -14.09978 -13.90592 -13.56123 -13.52636 -13.42237 -12.80504 -12.61828 -12.49525 -12.06364 -11.94623 -11.75116 -11.61396 -11.43728 -11.26786 -11.15492 -11.10816 -10.93230 -10.88085 -10.65802 -10.61664 -10.46385 -10.26751 -10.07237 -9.92316 -9.66178 -9.25077 -8.61275 -8.58619 -8.09456 -7.96635 -7.58779 -6.20715 -4.27280 0.43459 0.89308 1.96113 2.85876 3.23752 3.30679 3.35158 3.98483 4.31013 4.36004 4.44415 4.66719 4.68502 4.75249 4.79937 4.91412 5.02518 5.06381 5.11766 5.17401 5.24683 5.29941 5.38432 5.45997 5.55833 5.63241 5.72219 5.73890 5.84880 5.95068 5.96580 6.06833 6.11238 6.13965 6.15191 6.20537 6.30899 6.31537 6.44207 6.46514 6.54815 6.59548 6.71929 6.90694 6.99098 7.07202 7.42746 7.48883 7.67755 7.75779 7.83654 7.95376 8.15948 8.74442 9.40449 9.52066 10.86595 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.002276 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.346460 B =12297.911193 C =13030.247183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.131 4.131 12 C 0.041 3.959 13 N -0.519 5.519 14 C 0.021 3.979 15 C 0.119 3.881 16 H 0.099 0.901 17 O -0.541 6.541 18 C -0.117 4.117 19 C -0.065 4.065 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.056 4.056 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.048 4.048 28 C -0.094 4.094 29 C 0.059 3.941 30 H 0.267 0.733 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.364 0.636 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.044 0.956 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.630 -21.213 2.661 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.195 3.805 10 O -0.404 6.404 11 C -0.170 4.170 12 C -0.087 4.087 13 N -0.243 5.243 14 C -0.109 4.109 15 C 0.059 3.941 16 H 0.117 0.883 17 O -0.344 6.344 18 C -0.155 4.155 19 C -0.065 4.065 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.056 4.056 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.048 4.048 28 C -0.112 4.112 29 C -0.068 4.068 30 H 0.077 0.923 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.210 0.790 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.062 0.938 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.565 -21.294 2.657 23.494 hybrid contribution -0.901 1.241 0.311 1.565 sum 8.664 -20.053 2.969 22.045 Atomic orbital electron populations 1.69595 1.05976 1.27426 1.51107 1.25017 0.94999 0.99500 0.93770 0.86449 0.79874 0.82620 0.78220 1.20499 1.21129 1.19743 1.21615 0.93628 0.90639 1.50895 0.91929 1.19776 0.86167 0.91883 0.82625 1.86060 1.51425 1.53260 1.49627 1.23197 1.01751 0.91232 1.00796 1.23052 0.89711 0.97741 0.98171 1.63666 1.24092 1.02291 1.34233 1.22917 0.96412 0.93827 0.97699 1.21922 0.91911 0.93901 0.86355 0.88274 1.86661 1.49024 1.66399 1.32349 1.21428 0.94114 0.98564 1.01390 1.19439 0.96522 0.96455 0.94096 1.20833 0.96443 0.99565 0.95696 1.20988 0.94534 0.97585 0.99562 1.18100 0.95061 0.98217 0.94241 1.21029 0.93760 0.97749 0.99808 1.20814 0.99941 0.98560 0.94789 1.20819 0.96440 1.00456 0.96256 1.21033 0.94674 0.97198 0.99335 1.18090 0.94977 0.97786 0.93987 1.20818 0.93378 0.97825 0.99162 1.22854 0.98741 0.91422 0.93773 0.92326 0.76494 0.91815 0.91008 0.92109 0.94731 0.94003 0.91487 0.79003 0.89916 0.90590 0.85828 0.85623 0.85775 0.86232 0.86197 0.85689 0.85726 0.93802 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 10.72 55.43 0.59 -23.56 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.36 8.22 -34.44 -0.28 -14.64 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 9 C 0.24 5.90 0.86 -89.81 -0.08 5.82 16 10 O -0.59 -15.49 13.09 -35.23 -0.46 -15.95 16 11 C -0.13 -3.05 5.68 -24.45 -0.14 -3.19 16 12 C 0.04 0.80 6.71 -2.30 -0.02 0.79 16 13 N -0.52 -9.98 5.08 -231.24 -1.18 -11.15 16 14 C 0.02 0.32 4.18 -3.82 -0.02 0.30 16 15 C 0.12 1.63 2.88 -26.73 -0.08 1.55 16 16 H 0.10 1.60 6.83 -51.93 -0.35 1.24 16 17 O -0.54 -7.65 12.70 -35.23 -0.45 -8.10 16 18 C -0.12 -1.25 5.00 -27.88 -0.14 -1.39 16 19 C -0.07 -0.75 4.94 -104.97 -0.52 -1.27 16 20 C -0.11 -1.24 9.58 -39.93 -0.38 -1.62 16 21 C -0.11 -1.20 9.77 -39.48 -0.39 -1.58 16 22 C -0.06 -0.65 5.74 -106.84 -0.61 -1.26 16 23 C -0.11 -1.03 9.77 -39.48 -0.39 -1.41 16 24 C -0.12 -1.09 9.95 -39.93 -0.40 -1.48 16 25 C -0.12 -1.08 9.95 -39.93 -0.40 -1.48 16 26 C -0.10 -1.03 9.77 -39.49 -0.39 -1.42 16 27 C -0.05 -0.56 5.74 -106.83 -0.61 -1.18 16 28 C -0.09 -1.06 9.04 -39.48 -0.36 -1.41 16 29 C 0.06 1.32 5.49 -2.83 -0.02 1.30 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.38 10.24 6.99 45.56 0.32 10.55 16 32 H 0.06 1.54 8.04 -51.93 -0.42 1.12 16 33 H 0.07 1.76 7.78 -51.93 -0.40 1.35 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.67 7.81 -51.92 -0.41 0.27 16 36 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 38 H 0.36 3.78 9.05 45.56 0.41 4.19 16 39 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 46 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.04 0.95 6.64 -51.93 -0.35 0.61 16 49 H 0.08 1.81 7.63 -51.93 -0.40 1.42 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -30.16 394.51 -12.04 -42.21 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -6.19 Total: 16.59 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -5.29 Total: -21.85 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.58 Total: -34.72 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.91 Total: -24.05 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.16 -12.04 -42.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.465 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds