Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48500 * 109.47167 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47222 * 29.99941 * 3 2 1 6 6 H 1.48499 * 109.46971 * 149.99753 * 3 2 1 7 7 C 1.37878 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00037 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.76738 * 303.20028 * 9 7 2 11 11 C 1.55397 * 110.85009 * 66.46547 * 9 7 2 12 12 C 1.54905 * 101.74627 * 153.85767 * 11 9 7 13 13 N 1.47846 * 104.79599 * 323.02184 * 12 11 9 14 14 C 1.46904 * 111.00001 * 146.36142 * 13 12 11 15 15 C 1.53003 * 109.47053 * 173.32664 * 14 13 12 16 16 H 1.09000 * 109.46832 * 58.43394 * 15 14 13 17 17 O 1.42892 * 109.46729 * 298.43141 * 15 14 13 18 18 C 1.53004 * 109.46838 * 178.43440 * 15 14 13 19 19 C 1.50699 * 109.46904 * 185.00112 * 18 15 14 20 20 C 1.39372 * 119.50733 * 89.99525 * 19 18 15 21 21 C 1.36098 * 120.98948 * 179.97438 * 20 19 18 22 22 C 1.40538 * 119.65119 * 0.02646 * 21 20 19 23 23 C 1.40539 * 121.28047 * 180.02562 * 22 21 20 24 24 C 1.36096 * 119.65103 * 180.02562 * 23 22 21 25 25 C 1.39380 * 120.99019 * 359.94690 * 24 23 22 26 26 C 1.36088 * 120.98503 * 0.03419 * 25 24 23 27 27 C 1.40536 * 119.65938 * 359.97438 * 26 25 24 28 28 C 1.36091 * 119.50182 * 269.72834 * 19 18 15 29 29 C 1.47447 * 108.56716 * 24.09424 * 13 12 11 30 30 H 0.97001 * 119.99694 * 359.97438 * 1 2 3 31 31 H 0.96692 * 114.00047 * 56.80004 * 10 9 7 32 32 H 1.08999 * 110.86832 * 35.77394 * 11 9 7 33 33 H 1.08996 * 111.06050 * 272.03193 * 11 9 7 34 34 H 1.08997 * 110.37687 * 204.18985 * 12 11 9 35 35 H 1.09008 * 110.37077 * 81.84935 * 12 11 9 36 36 H 1.09004 * 109.47153 * 293.32728 * 14 13 12 37 37 H 1.09001 * 109.47025 * 53.32412 * 14 13 12 38 38 H 0.96697 * 114.00329 * 299.99596 * 17 15 14 39 39 H 1.09005 * 109.46940 * 304.99984 * 18 15 14 40 40 H 1.08998 * 109.46971 * 64.99839 * 18 15 14 41 41 H 1.08000 * 119.50728 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.17181 * 180.02562 * 21 20 19 43 43 H 1.08000 * 120.17700 * 359.95019 * 23 22 21 44 44 H 1.07998 * 119.50594 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.50613 * 180.02562 * 25 24 23 46 46 H 1.08007 * 120.16954 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.17646 * 0.02562 * 28 19 18 48 48 H 1.08999 * 109.88819 * 118.41698 * 29 13 12 49 49 H 1.08996 * 109.88560 * 239.44278 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3636 -2.5718 1.1183 11 6 0.4727 -2.6884 -1.3311 12 6 0.3766 -4.2317 -1.4236 13 7 1.6660 -4.7228 -0.8923 14 6 1.4919 -5.9974 -0.1830 15 6 2.8622 -6.5558 0.2062 16 1 3.3842 -5.8331 0.8334 17 8 3.6284 -6.8032 -0.9743 18 6 2.6792 -7.8636 0.9790 19 6 4.0192 -8.3496 1.4681 20 6 4.4822 -7.9433 2.7183 21 6 5.6874 -8.3643 3.1900 22 6 6.4796 -9.2212 2.4070 23 6 7.7292 -9.6772 2.8606 24 6 8.4693 -10.5060 2.0747 25 6 8.0065 -10.9119 0.8242 26 6 6.8015 -10.4908 0.3526 27 6 6.0090 -9.6342 1.1356 28 6 4.7565 -9.1832 0.6848 29 6 2.2282 -3.6934 0.0012 30 1 -0.4850 0.8401 0.0004 31 1 -0.2713 -1.8440 1.1643 32 1 1.0357 -2.2813 -2.1711 33 1 -0.5182 -2.2382 -1.2731 34 1 0.2503 -4.5427 -2.4606 35 1 -0.4493 -4.5977 -0.8135 36 1 0.8971 -5.8348 0.7158 37 1 0.9812 -6.7081 -0.8329 38 1 3.2232 -7.4385 -1.5803 39 1 2.0213 -7.6930 1.8312 40 1 2.2376 -8.6141 0.3235 41 1 3.8756 -7.2844 3.3219 42 1 6.0332 -8.0415 4.1609 43 1 8.1008 -9.3706 3.8272 44 1 9.4290 -10.8553 2.4257 45 1 8.6134 -11.5704 0.2205 46 1 6.4555 -10.8140 -0.6182 47 1 4.3832 -9.4929 -0.2802 48 1 2.3259 -4.0921 1.0109 49 1 3.2032 -3.3749 -0.3675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = -79.630795 kcal Electronic energy + Delta-G solvation = -29194.746731 eV Core-core repulsion = 25277.921680 eV Total energy + Delta-G solvation = -3916.825051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30838 -40.34307 -38.76521 -37.24357 -36.15699 -34.14257 -33.82380 -32.98933 -31.84603 -30.39567 -29.97906 -29.22982 -27.08677 -25.81424 -24.19087 -23.25521 -22.79309 -22.32673 -21.87117 -21.00480 -19.16742 -18.27579 -17.84427 -17.56242 -16.96066 -16.91670 -16.72042 -16.47567 -15.76090 -15.74671 -15.53141 -15.48940 -15.00301 -14.49665 -14.43714 -14.28034 -14.15627 -14.07816 -13.75515 -13.52212 -13.40413 -13.19255 -12.90027 -12.78262 -12.62510 -12.54370 -12.42889 -12.30517 -12.19595 -12.11358 -11.86583 -11.83334 -11.66870 -11.60660 -11.19070 -10.89808 -10.70985 -10.65109 -10.10618 -9.38918 -9.16782 -8.72838 -8.24256 -6.38760 -0.31946 0.10875 1.18584 1.38683 1.40529 1.50502 2.09670 2.37025 2.99317 3.03561 3.24624 3.61854 3.68174 3.78520 3.87801 3.96716 4.01905 4.11051 4.14022 4.27758 4.30144 4.33611 4.38693 4.40272 4.44528 4.52315 4.53478 4.57769 4.63450 4.71557 4.74190 4.84760 4.88380 4.97099 5.08550 5.12146 5.17672 5.23344 5.28261 5.37134 5.40502 5.47429 5.53231 5.60330 5.69081 5.75220 5.79063 5.95828 5.98506 6.16094 6.18466 6.28096 6.65151 7.04293 7.31953 7.42031 8.81128 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.002276 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.346460 B =12297.911193 C =13030.247183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.220 3.780 10 O -0.599 6.599 11 C -0.125 4.125 12 C 0.050 3.950 13 N -0.519 5.519 14 C 0.021 3.979 15 C 0.130 3.870 16 H 0.068 0.932 17 O -0.558 6.558 18 C -0.104 4.104 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.079 4.079 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.072 4.072 28 C -0.099 4.099 29 C 0.071 3.929 30 H 0.270 0.730 31 H 0.377 0.623 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.382 0.618 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.041 0.959 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 -22.912 2.017 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.070 0.930 9 C 0.180 3.820 10 O -0.408 6.408 11 C -0.164 4.164 12 C -0.077 4.077 13 N -0.243 5.243 14 C -0.108 4.108 15 C 0.070 3.930 16 H 0.086 0.914 17 O -0.364 6.364 18 C -0.142 4.142 19 C -0.081 4.081 20 C -0.145 4.145 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.072 4.072 28 C -0.117 4.117 29 C -0.057 4.057 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.230 0.770 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.059 0.941 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.306 -23.018 2.005 25.300 hybrid contribution -1.061 1.716 0.507 2.080 sum 9.245 -21.302 2.512 23.358 Atomic orbital electron populations 1.69667 1.06764 1.28227 1.50773 1.25695 0.95880 1.02271 0.93275 0.85530 0.78616 0.79012 0.78302 1.19985 1.20349 1.19871 1.21866 0.93421 0.92290 1.52062 0.93027 1.20011 0.86643 0.92366 0.83011 1.86051 1.51447 1.52883 1.50433 1.23003 1.00088 0.94078 0.99241 1.22999 0.90037 0.94841 0.99834 1.63671 1.23781 1.02808 1.34041 1.23055 0.97678 0.92375 0.97661 1.21670 0.90299 0.94728 0.86276 0.91409 1.86624 1.49592 1.67270 1.32891 1.21300 0.94051 0.97339 1.01513 1.19562 0.97053 0.97093 0.94347 1.21029 0.97011 1.00170 0.96264 1.21240 0.94475 0.97521 1.00296 1.18421 0.96040 0.98742 0.94667 1.21307 0.93387 0.98152 1.00889 1.21201 1.00742 0.97666 0.94610 1.21208 0.96280 1.00163 0.96492 1.21311 0.95057 0.97112 1.00051 1.18420 0.95629 0.98604 0.94533 1.21057 0.93326 0.97564 0.99718 1.22606 0.97540 0.91385 0.94174 0.92038 0.77185 0.93307 0.92721 0.89543 0.94266 0.94854 0.88377 0.76953 0.89544 0.88124 0.85526 0.84129 0.84122 0.83674 0.83626 0.83964 0.84087 0.94101 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.51 10.72 21.45 0.23 -49.28 16 2 C 0.03 1.55 5.29 84.65 0.45 2.00 16 3 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.56 -30.99 8.22 25.60 0.21 -30.78 16 8 H 0.05 2.89 7.53 -2.91 -0.02 2.87 16 9 C 0.22 11.22 0.86 -10.27 -0.01 11.21 16 10 O -0.60 -31.86 13.09 -148.98 -1.95 -33.81 16 11 C -0.13 -5.89 5.68 32.07 0.18 -5.71 16 12 C 0.05 1.91 6.71 86.77 0.58 2.50 16 13 N -0.52 -19.51 5.08 -885.50 -4.50 -24.01 16 14 C 0.02 0.60 4.18 86.30 0.36 0.97 16 15 C 0.13 3.46 2.88 30.60 0.09 3.54 16 16 H 0.07 2.24 6.83 -2.39 -0.02 2.22 16 17 O -0.56 -14.99 12.70 -148.98 -1.89 -16.88 16 18 C -0.10 -2.09 5.00 29.85 0.15 -1.94 16 19 C -0.08 -1.83 4.94 -20.09 -0.10 -1.92 16 20 C -0.13 -2.96 9.58 22.04 0.21 -2.75 16 21 C -0.12 -2.61 9.77 22.33 0.22 -2.40 16 22 C -0.08 -1.80 5.74 -21.30 -0.12 -1.92 16 23 C -0.12 -2.20 9.77 22.33 0.22 -1.98 16 24 C -0.12 -1.94 9.95 22.05 0.22 -1.72 16 25 C -0.12 -1.92 9.95 22.04 0.22 -1.70 16 26 C -0.12 -2.14 9.77 22.33 0.22 -1.93 16 27 C -0.07 -1.63 5.74 -21.30 -0.12 -1.75 16 28 C -0.10 -2.14 9.04 22.33 0.20 -1.94 16 29 C 0.07 3.20 5.49 86.65 0.48 3.68 16 30 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.38 20.65 6.99 -74.06 -0.52 20.13 16 32 H 0.05 2.39 8.04 -2.39 -0.02 2.37 16 33 H 0.05 2.71 7.78 -2.39 -0.02 2.70 16 34 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.04 1.46 7.81 -2.38 -0.02 1.44 16 36 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 37 H 0.10 2.27 8.12 -2.39 -0.02 2.25 16 38 H 0.38 6.95 9.05 -74.06 -0.67 6.28 16 39 H 0.09 1.66 8.08 -2.38 -0.02 1.64 16 40 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 41 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 48 H 0.04 1.83 6.64 -2.39 -0.02 1.81 16 49 H 0.06 3.01 7.63 -2.39 -0.02 2.99 16 Total: -1.00 -65.60 394.51 -2.66 -68.26 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.23 Total: 45.13 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 3.65 Total: -34.54 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -4.27 Total: -73.28 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -3.84 Total: -50.69 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.60 -2.66 -68.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.368 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds