Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48493 * 109.47204 * 266.74891 * 3 2 1 5 5 H 1.48500 * 109.46827 * 26.75000 * 3 2 1 6 6 H 1.48506 * 109.46520 * 146.74757 * 3 2 1 7 7 C 1.37880 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00381 * 353.90635 * 7 2 1 9 9 C 1.50707 * 119.99553 * 173.90245 * 7 2 1 10 10 O 1.42900 * 110.88807 * 328.82144 * 9 7 2 11 11 C 1.55155 * 111.00063 * 204.94565 * 9 7 2 12 12 C 1.54325 * 102.93979 * 206.38820 * 11 9 7 13 13 N 1.47022 * 107.27224 * 22.18951 * 12 11 9 14 14 C 1.34778 * 125.64925 * 180.79465 * 13 12 11 15 15 O 1.21279 * 119.99970 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99893 * 0.02562 * 14 13 12 17 17 H 1.08994 * 115.55545 * 265.12534 * 16 14 13 18 18 C 1.53037 * 117.50147 * 50.82130 * 16 14 13 19 19 C 1.52819 * 117.50047 * 119.39163 * 16 14 13 20 20 C 1.53188 * 117.71175 * 144.85230 * 19 16 14 21 21 C 1.53449 * 107.65544 * 169.76584 * 20 19 16 22 22 C 1.52579 * 109.05680 * 65.87509 * 21 20 19 23 23 C 1.50469 * 111.34267 * 305.78166 * 22 21 20 24 24 C 1.38802 * 118.43389 * 201.44295 * 23 22 21 25 25 C 1.37993 * 120.41420 * 180.28709 * 24 23 22 26 26 C 1.38264 * 119.97440 * 359.97438 * 25 24 23 27 27 C 1.38094 * 119.75526 * 359.87195 * 26 25 24 28 28 C 1.37918 * 122.11652 * 21.49831 * 23 22 21 29 29 C 1.47426 * 108.70078 * 1.06293 * 13 12 11 30 30 H 0.97005 * 119.99732 * 359.97438 * 1 2 3 31 31 H 0.96694 * 114.00316 * 292.34334 * 10 9 7 32 32 H 1.08996 * 110.72108 * 88.02435 * 11 9 7 33 33 H 1.09002 * 110.87133 * 324.81714 * 11 9 7 34 34 H 1.09005 * 109.88301 * 262.77382 * 12 11 9 35 35 H 1.09001 * 110.01212 * 141.68127 * 12 11 9 36 36 H 1.09004 * 117.49967 * 214.94588 * 18 16 14 37 37 H 1.08998 * 117.50474 * 359.97438 * 18 16 14 38 38 H 1.09000 * 109.82494 * 289.30508 * 20 19 16 39 39 H 1.09005 * 109.82168 * 50.16458 * 20 19 16 40 40 H 1.09001 * 109.54068 * 185.74421 * 21 20 19 41 41 H 1.09003 * 109.54182 * 305.99760 * 21 20 19 42 42 H 1.08997 * 109.10768 * 66.26336 * 22 21 20 43 43 H 1.09000 * 109.10552 * 185.36551 * 22 21 20 44 44 H 1.08001 * 119.79721 * 0.24611 * 24 23 22 45 45 H 1.07999 * 120.01285 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.11908 * 179.89288 * 26 25 24 47 47 H 1.07998 * 119.87557 * 180.02562 * 27 26 25 48 48 H 1.08999 * 110.36937 * 94.71032 * 29 13 12 49 49 H 1.09007 * 110.36485 * 217.03016 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5655 2.0067 -1.3977 5 1 1.4139 2.6715 0.6302 6 1 3.5107 1.4609 0.7678 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1268 0.0983 9 6 3.5052 -1.1977 -0.1392 10 8 3.9461 -0.0947 -0.9335 11 6 4.0059 -2.5428 -0.7286 12 6 5.4440 -2.6471 -0.1787 13 7 5.5167 -1.7957 1.0177 14 6 6.6115 -1.6037 1.7799 15 8 6.5559 -0.8765 2.7489 16 6 7.9048 -2.2927 1.4281 17 1 8.0904 -3.2354 1.9426 18 6 8.4055 -2.1630 -0.0122 19 6 9.1120 -1.4098 1.1143 20 6 10.4929 -1.9105 1.5489 21 6 11.5435 -0.9966 0.9041 22 6 11.4117 0.4056 1.4911 23 6 10.0063 0.9258 1.3562 24 6 9.8014 2.2976 1.4091 25 6 8.5287 2.8187 1.2957 26 6 7.4482 1.9726 1.1279 27 6 7.6489 0.6075 1.0717 28 6 8.9266 0.0851 1.1843 29 6 4.1918 -1.1918 1.2493 30 1 -0.4850 0.8401 0.0004 31 1 3.6859 -0.1505 -1.8631 32 1 4.0111 -2.5082 -1.8180 33 1 3.3960 -3.3735 -0.3734 34 1 6.1537 -2.2954 -0.9275 35 1 5.6676 -3.6802 0.0874 36 1 8.9209 -3.0205 -0.4450 37 1 7.7992 -1.5798 -0.7053 38 1 10.5784 -1.8633 2.6346 39 1 10.6371 -2.9368 1.2112 40 1 12.5407 -1.3857 1.1099 41 1 11.3811 -0.9578 -0.1730 42 1 11.6819 0.3774 2.5466 43 1 12.0916 1.0771 0.9668 44 1 10.6432 2.9613 1.5403 45 1 8.3767 3.8871 1.3382 46 1 6.4509 2.3779 1.0407 47 1 6.8064 -0.0552 0.9402 48 1 3.6202 -1.7913 1.9578 49 1 4.2991 -0.1706 1.6151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = -15.856707 kcal Electronic energy + Delta-G solvation = -31561.584631 eV Core-core repulsion = 27647.525031 eV Total energy + Delta-G solvation = -3914.059599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20346 -39.26144 -37.74669 -36.96269 -34.87403 -34.68809 -32.40624 -30.65279 -30.26355 -30.24230 -28.60672 -27.32628 -25.49103 -23.89351 -23.05775 -22.76597 -22.10014 -21.23918 -19.95295 -19.28196 -18.59939 -17.54550 -16.82157 -16.10317 -15.87519 -15.70423 -15.29294 -15.19425 -14.86111 -14.76327 -14.29116 -13.95086 -13.71523 -13.51367 -13.37877 -12.90518 -12.87265 -12.71794 -12.56407 -12.30964 -12.19816 -12.13508 -11.84682 -11.75931 -11.52431 -11.44566 -11.21471 -10.90263 -10.72804 -10.61284 -10.50600 -10.38676 -10.34986 -10.19559 -10.05107 -9.45775 -9.25941 -8.63371 -8.56312 -8.52215 -8.30501 -8.08374 -6.23488 -4.36646 1.48380 1.62045 2.88239 3.24544 3.44224 3.52951 3.59353 3.70515 4.06743 4.36557 4.47373 4.47630 4.58858 4.63624 4.81031 4.93193 5.02089 5.05897 5.09564 5.14678 5.18807 5.22799 5.33055 5.34696 5.48958 5.51636 5.57941 5.60049 5.64084 5.70007 5.72189 5.77504 5.87528 5.91965 6.00624 6.05088 6.08312 6.10346 6.23524 6.26934 6.47415 6.53171 6.62161 6.66920 6.67967 6.79463 6.86316 6.94905 7.21711 7.42044 7.93209 8.08398 8.50275 8.57877 8.77363 9.38207 10.85071 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.004193 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.129344 B = 6676.422558 C = 7825.346716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.947 3.053 4 H -0.292 1.292 5 H -0.325 1.325 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.221 3.779 10 O -0.558 6.558 11 C -0.150 4.150 12 C 0.102 3.898 13 N -0.612 5.612 14 C 0.555 3.445 15 O -0.539 6.539 16 C -0.169 4.169 17 H 0.134 0.866 18 C -0.155 4.155 19 C -0.054 4.054 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.076 4.076 24 C -0.132 4.132 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.100 4.100 28 C -0.049 4.049 29 C 0.112 3.888 30 H 0.267 0.733 31 H 0.371 0.629 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.139 0.861 48 H 0.079 0.921 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.993 -3.760 -1.712 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.783 3.217 4 H -0.220 1.220 5 H -0.257 1.257 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.180 3.820 10 O -0.366 6.366 11 C -0.188 4.188 12 C -0.021 4.021 13 N -0.346 5.346 14 C 0.344 3.656 15 O -0.417 6.417 16 C -0.190 4.190 17 H 0.152 0.848 18 C -0.191 4.191 19 C -0.054 4.054 20 C -0.118 4.118 21 C -0.152 4.152 22 C -0.114 4.114 23 C -0.076 4.076 24 C -0.150 4.150 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.118 4.118 28 C -0.049 4.049 29 C -0.009 4.009 30 H 0.077 0.923 31 H 0.219 0.781 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.157 0.843 48 H 0.098 0.902 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.100 -3.110 -0.576 22.325 hybrid contribution -0.179 0.608 -0.453 0.779 sum 21.921 -2.501 -1.029 22.087 Atomic orbital electron populations 1.69960 1.06857 1.27918 1.47293 1.25149 0.94898 1.00554 0.92379 0.85696 0.77987 0.80046 0.77984 1.21972 1.25697 1.19473 1.21146 0.88218 0.95382 1.54278 0.89987 1.20210 0.93421 0.81711 0.86644 1.86147 1.80021 1.46524 1.23890 1.23291 0.93512 1.01423 1.00559 1.22141 0.99145 0.93696 0.87128 1.48841 1.10884 1.47214 1.27675 1.18917 0.83292 0.80930 0.82437 1.90777 1.84348 1.38111 1.28474 1.22415 0.93537 1.02023 1.00986 0.84842 1.23418 1.02491 1.02560 0.90663 1.20177 0.92648 0.90311 1.02299 1.21254 0.91076 0.98567 1.00918 1.21464 0.98448 0.94607 1.00643 1.20343 0.93129 0.96556 1.01414 1.19471 0.94513 0.93062 1.00566 1.20967 0.96989 0.94309 1.02758 1.21047 0.92802 0.99467 1.00407 1.21119 0.98956 0.93579 0.99894 1.21790 0.96920 0.96194 0.96904 1.18607 0.92831 0.91928 1.01499 1.22963 0.80129 0.98819 0.99009 0.92333 0.78146 0.90710 0.90187 0.91728 0.92250 0.87471 0.87665 0.90883 0.91024 0.91337 0.91434 0.90880 0.91044 0.86554 0.86446 0.86226 0.84342 0.90242 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.95 23.58 24.89 -169.99 -4.23 19.35 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.33 -8.40 7.11 56.52 0.40 -7.99 16 6 H -0.27 -6.79 5.44 56.52 0.31 -6.48 16 7 C -0.55 -14.23 8.89 -34.44 -0.31 -14.54 16 8 H 0.08 2.28 8.00 -52.49 -0.42 1.86 16 9 C 0.22 4.66 0.70 -89.62 -0.06 4.60 16 10 O -0.56 -11.64 8.49 -35.23 -0.30 -11.94 16 11 C -0.15 -2.50 6.11 -24.90 -0.15 -2.65 16 12 C 0.10 1.50 5.98 -3.06 -0.02 1.48 16 13 N -0.61 -11.03 2.83 -172.45 -0.49 -11.52 16 14 C 0.55 10.02 4.26 -10.99 -0.05 9.97 16 15 O -0.54 -11.81 15.14 5.56 0.08 -11.73 16 16 C -0.17 -2.29 5.47 -91.85 -0.50 -2.79 16 17 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 18 C -0.15 -1.75 7.98 -26.80 -0.21 -1.96 16 19 C -0.05 -0.69 2.24 -155.70 -0.35 -1.04 16 20 C -0.08 -0.78 5.73 -26.40 -0.15 -0.93 16 21 C -0.11 -0.99 5.92 -26.71 -0.16 -1.15 16 22 C -0.08 -0.77 5.66 -28.21 -0.16 -0.93 16 23 C -0.08 -1.04 5.75 -104.64 -0.60 -1.64 16 24 C -0.13 -1.77 9.63 -39.46 -0.38 -2.15 16 25 C -0.12 -1.76 10.04 -39.66 -0.40 -2.16 16 26 C -0.12 -2.08 10.06 -39.62 -0.40 -2.48 16 27 C -0.10 -1.82 6.94 -39.54 -0.27 -2.10 16 28 C -0.05 -0.75 5.47 -104.60 -0.57 -1.33 16 29 C 0.11 2.40 5.89 -2.53 -0.01 2.38 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 31 H 0.37 6.63 8.97 45.56 0.41 7.03 16 32 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 34 H 0.06 0.86 5.76 -51.93 -0.30 0.56 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.90 8.13 -51.93 -0.42 0.47 16 37 H 0.11 1.34 6.38 -51.93 -0.33 1.01 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 46 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 47 H 0.14 2.74 3.58 -55.88 -0.20 2.54 16 48 H 0.08 1.73 8.03 -51.93 -0.42 1.31 16 49 H 0.08 1.84 6.53 -51.92 -0.34 1.50 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -32.71 372.09 -10.14 -42.85 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.73 Total: 10.00 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -4.86 Total: -17.42 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.29 Total: -36.72 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.22 Total: -23.66 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.23 Total: 19.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.71 -10.14 -42.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.990 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds