Wall clock time and date at job start Sat Apr 11 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48493 * 109.47204 * 266.74891 * 3 2 1 5 5 H 1.48500 * 109.46827 * 26.75000 * 3 2 1 6 6 H 1.48506 * 109.46520 * 146.74757 * 3 2 1 7 7 C 1.37880 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00381 * 353.90635 * 7 2 1 9 9 C 1.50707 * 119.99553 * 173.90245 * 7 2 1 10 10 O 1.42900 * 110.88807 * 328.82144 * 9 7 2 11 11 C 1.55155 * 111.00063 * 204.94565 * 9 7 2 12 12 C 1.54325 * 102.93979 * 206.38820 * 11 9 7 13 13 N 1.47022 * 107.27224 * 22.18951 * 12 11 9 14 14 C 1.34778 * 125.64925 * 180.79465 * 13 12 11 15 15 O 1.21279 * 119.99970 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99893 * 0.02562 * 14 13 12 17 17 H 1.08994 * 115.55545 * 265.12534 * 16 14 13 18 18 C 1.53037 * 117.50147 * 50.82130 * 16 14 13 19 19 C 1.52819 * 117.50047 * 119.39163 * 16 14 13 20 20 C 1.53188 * 117.71175 * 144.85230 * 19 16 14 21 21 C 1.53449 * 107.65544 * 169.76584 * 20 19 16 22 22 C 1.52579 * 109.05680 * 65.87509 * 21 20 19 23 23 C 1.50469 * 111.34267 * 305.78166 * 22 21 20 24 24 C 1.38802 * 118.43389 * 201.44295 * 23 22 21 25 25 C 1.37993 * 120.41420 * 180.28709 * 24 23 22 26 26 C 1.38264 * 119.97440 * 359.97438 * 25 24 23 27 27 C 1.38094 * 119.75526 * 359.87195 * 26 25 24 28 28 C 1.37918 * 122.11652 * 21.49831 * 23 22 21 29 29 C 1.47426 * 108.70078 * 1.06293 * 13 12 11 30 30 H 0.97005 * 119.99732 * 359.97438 * 1 2 3 31 31 H 0.96694 * 114.00316 * 292.34334 * 10 9 7 32 32 H 1.08996 * 110.72108 * 88.02435 * 11 9 7 33 33 H 1.09002 * 110.87133 * 324.81714 * 11 9 7 34 34 H 1.09005 * 109.88301 * 262.77382 * 12 11 9 35 35 H 1.09001 * 110.01212 * 141.68127 * 12 11 9 36 36 H 1.09004 * 117.49967 * 214.94588 * 18 16 14 37 37 H 1.08998 * 117.50474 * 359.97438 * 18 16 14 38 38 H 1.09000 * 109.82494 * 289.30508 * 20 19 16 39 39 H 1.09005 * 109.82168 * 50.16458 * 20 19 16 40 40 H 1.09001 * 109.54068 * 185.74421 * 21 20 19 41 41 H 1.09003 * 109.54182 * 305.99760 * 21 20 19 42 42 H 1.08997 * 109.10768 * 66.26336 * 22 21 20 43 43 H 1.09000 * 109.10552 * 185.36551 * 22 21 20 44 44 H 1.08001 * 119.79721 * 0.24611 * 24 23 22 45 45 H 1.07999 * 120.01285 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.11908 * 179.89288 * 26 25 24 47 47 H 1.07998 * 119.87557 * 180.02562 * 27 26 25 48 48 H 1.08999 * 110.36937 * 94.71032 * 29 13 12 49 49 H 1.09007 * 110.36485 * 217.03016 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5655 2.0067 -1.3977 5 1 1.4139 2.6715 0.6302 6 1 3.5107 1.4609 0.7678 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1268 0.0983 9 6 3.5052 -1.1977 -0.1392 10 8 3.9461 -0.0947 -0.9335 11 6 4.0059 -2.5428 -0.7286 12 6 5.4440 -2.6471 -0.1787 13 7 5.5167 -1.7957 1.0177 14 6 6.6115 -1.6037 1.7799 15 8 6.5559 -0.8765 2.7489 16 6 7.9048 -2.2927 1.4281 17 1 8.0904 -3.2354 1.9426 18 6 8.4055 -2.1630 -0.0122 19 6 9.1120 -1.4098 1.1143 20 6 10.4929 -1.9105 1.5489 21 6 11.5435 -0.9966 0.9041 22 6 11.4117 0.4056 1.4911 23 6 10.0063 0.9258 1.3562 24 6 9.8014 2.2976 1.4091 25 6 8.5287 2.8187 1.2957 26 6 7.4482 1.9726 1.1279 27 6 7.6489 0.6075 1.0717 28 6 8.9266 0.0851 1.1843 29 6 4.1918 -1.1918 1.2493 30 1 -0.4850 0.8401 0.0004 31 1 3.6859 -0.1505 -1.8631 32 1 4.0111 -2.5082 -1.8180 33 1 3.3960 -3.3735 -0.3734 34 1 6.1537 -2.2954 -0.9275 35 1 5.6676 -3.6802 0.0874 36 1 8.9209 -3.0205 -0.4450 37 1 7.7992 -1.5798 -0.7053 38 1 10.5784 -1.8633 2.6346 39 1 10.6371 -2.9368 1.2112 40 1 12.5407 -1.3857 1.1099 41 1 11.3811 -0.9578 -0.1730 42 1 11.6819 0.3774 2.5466 43 1 12.0916 1.0771 0.9668 44 1 10.6432 2.9613 1.5403 45 1 8.3767 3.8871 1.3382 46 1 6.4509 2.3779 1.0407 47 1 6.8064 -0.0552 0.9402 48 1 3.6202 -1.7913 1.9578 49 1 4.2991 -0.1706 1.6151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:12 Heat of formation + Delta-G solvation = -37.151343 kcal Electronic energy + Delta-G solvation = -31562.508036 eV Core-core repulsion = 27647.525031 eV Total energy + Delta-G solvation = -3914.983004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36320 -40.57495 -39.21972 -38.06948 -36.39375 -35.67859 -34.51920 -31.98399 -31.56478 -31.24793 -30.17167 -28.36806 -27.12925 -25.30113 -24.05342 -23.73748 -23.36840 -22.25264 -21.61171 -20.54576 -19.67053 -19.43818 -18.15201 -17.44376 -17.30844 -16.90895 -16.72144 -16.45440 -16.21869 -16.15868 -15.66129 -15.30755 -14.79382 -14.67754 -14.47666 -14.42512 -14.06743 -13.98356 -13.87221 -13.77692 -13.56137 -13.44683 -13.23327 -13.07464 -12.79817 -12.62959 -12.39809 -12.27342 -12.18006 -12.06447 -11.92468 -11.87756 -11.34779 -11.30055 -11.28502 -10.98463 -10.81831 -10.70199 -10.35966 -9.76037 -9.50481 -9.37152 -8.42303 -6.53662 0.35047 0.44732 1.36265 1.43553 1.54398 1.64487 1.94378 2.35406 2.52972 2.91157 2.98908 3.31355 3.44115 3.56801 3.72181 3.75000 3.80637 3.88880 4.03138 4.08233 4.15689 4.24262 4.28587 4.34296 4.36944 4.45625 4.46450 4.58015 4.63467 4.66488 4.78454 4.84012 4.87580 4.92930 4.96697 5.00542 5.05647 5.08284 5.10069 5.18225 5.19960 5.23119 5.29348 5.30588 5.48051 5.51143 5.56217 5.64950 5.71804 6.01930 6.10028 6.53251 6.57911 6.94801 7.12314 7.26519 8.70386 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.004193 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.129344 B = 6676.422558 C = 7825.346716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.034 3.966 3 Si 0.999 3.001 4 H -0.274 1.274 5 H -0.340 1.340 6 H -0.285 1.285 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.217 3.783 10 O -0.564 6.564 11 C -0.139 4.139 12 C 0.104 3.896 13 N -0.614 5.614 14 C 0.550 3.450 15 O -0.591 6.591 16 C -0.179 4.179 17 H 0.162 0.838 18 C -0.130 4.130 19 C -0.062 4.062 20 C -0.077 4.077 21 C -0.111 4.111 22 C -0.079 4.079 23 C -0.077 4.077 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.063 4.063 29 C 0.118 3.882 30 H 0.267 0.733 31 H 0.385 0.615 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.151 0.849 45 H 0.136 0.864 46 H 0.092 0.908 47 H 0.118 0.882 48 H 0.065 0.935 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.112 -5.780 -3.290 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.167 4.167 3 Si 0.835 3.165 4 H -0.201 1.201 5 H -0.273 1.273 6 H -0.213 1.213 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.176 3.824 10 O -0.373 6.373 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.346 5.346 14 C 0.342 3.658 15 O -0.473 6.473 16 C -0.199 4.199 17 H 0.179 0.821 18 C -0.166 4.166 19 C -0.062 4.062 20 C -0.114 4.114 21 C -0.148 4.148 22 C -0.115 4.115 23 C -0.077 4.077 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.174 4.174 27 C -0.148 4.148 28 C -0.063 4.063 29 C -0.005 4.005 30 H 0.076 0.924 31 H 0.235 0.765 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.169 0.831 45 H 0.154 0.846 46 H 0.110 0.890 47 H 0.135 0.865 48 H 0.083 0.917 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 27.238 -5.158 -2.206 27.810 hybrid contribution -1.768 1.252 0.097 2.169 sum 25.470 -3.906 -2.109 25.854 Atomic orbital electron populations 1.70051 1.08081 1.28355 1.50281 1.25707 0.95186 1.02929 0.92887 0.84852 0.75871 0.77423 0.78341 1.20064 1.27298 1.21270 1.21462 0.90852 0.93851 1.51875 0.92509 1.20060 0.90664 0.84483 0.87166 1.86100 1.79564 1.46672 1.24999 1.23189 0.94573 0.97871 1.02109 1.22353 0.98102 0.95053 0.86199 1.48858 1.09569 1.47378 1.28840 1.19809 0.84482 0.80110 0.81369 1.90741 1.85241 1.40377 1.30904 1.22419 0.91030 1.02823 1.03639 0.82059 1.23540 1.01034 1.03029 0.89010 1.20453 0.94035 0.88549 1.03205 1.21340 0.89004 1.00361 1.00712 1.21491 0.99575 0.93329 1.00384 1.20481 0.90565 0.98064 1.02436 1.20043 0.96201 0.93043 0.98422 1.21422 0.97155 0.95168 1.01217 1.21274 0.92803 1.00138 1.00038 1.21119 0.98840 0.94536 1.02892 1.21780 0.97919 0.96003 0.99054 1.18975 0.92035 0.94221 1.01023 1.22507 0.82614 0.96667 0.98755 0.92403 0.76526 0.88033 0.90294 0.89438 0.88749 0.83065 0.89325 0.91502 0.87976 0.88433 0.91363 0.90031 0.88970 0.83093 0.84590 0.88997 0.86508 0.91672 0.94622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.96 21.45 0.30 -56.45 16 2 C 0.03 1.92 5.47 84.66 0.46 2.38 16 3 Si 1.00 51.23 24.89 68.60 1.71 52.94 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.34 -18.09 7.11 99.48 0.71 -17.39 16 6 H -0.29 -15.34 5.44 99.48 0.54 -14.80 16 7 C -0.54 -28.86 8.89 25.60 0.23 -28.63 16 8 H 0.06 3.27 8.00 -2.91 -0.02 3.25 16 9 C 0.22 9.31 0.70 -10.15 -0.01 9.30 16 10 O -0.56 -23.70 8.49 -148.98 -1.27 -24.97 16 11 C -0.14 -4.40 6.11 31.78 0.19 -4.21 16 12 C 0.10 2.79 5.98 86.73 0.52 3.31 16 13 N -0.61 -22.17 2.83 -817.90 -2.31 -24.48 16 14 C 0.55 20.00 4.26 87.66 0.37 20.38 16 15 O -0.59 -27.34 15.14 -3.03 -0.05 -27.38 16 16 C -0.18 -4.36 5.47 -11.59 -0.06 -4.42 16 17 H 0.16 3.01 8.14 -2.39 -0.02 2.99 16 18 C -0.13 -2.38 7.98 30.55 0.24 -2.14 16 19 C -0.06 -1.39 2.24 -52.95 -0.12 -1.51 16 20 C -0.08 -1.11 5.73 30.81 0.18 -0.94 16 21 C -0.11 -1.32 5.92 30.61 0.18 -1.14 16 22 C -0.08 -1.23 5.66 29.64 0.17 -1.06 16 23 C -0.08 -1.93 5.75 -19.88 -0.11 -2.04 16 24 C -0.13 -3.30 9.63 22.35 0.22 -3.09 16 25 C -0.12 -3.74 10.04 22.22 0.22 -3.52 16 26 C -0.16 -5.92 10.06 22.24 0.22 -5.70 16 27 C -0.13 -4.91 6.94 22.30 0.15 -4.76 16 28 C -0.06 -1.87 5.47 -19.85 -0.11 -1.98 16 29 C 0.12 5.31 5.89 86.85 0.51 5.82 16 30 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 31 H 0.38 13.42 8.97 -74.06 -0.66 12.75 16 32 H 0.10 2.68 8.12 -2.39 -0.02 2.67 16 33 H 0.08 2.53 7.99 -2.39 -0.02 2.51 16 34 H 0.09 2.00 5.76 -2.38 -0.01 1.98 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.15 1.48 8.13 -2.38 -0.02 1.46 16 37 H 0.09 1.97 6.38 -2.39 -0.02 1.96 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 0.89 8.03 -2.38 -0.02 0.87 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 44 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 46 H 0.09 3.80 8.06 -2.91 -0.02 3.78 16 47 H 0.12 4.86 3.58 -6.10 -0.02 4.84 16 48 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 49 H 0.04 1.87 6.53 -2.38 -0.02 1.85 16 Total: -1.00 -79.44 372.09 1.97 -77.47 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.13 Total: 26.82 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.46 Total: -23.95 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.02 Total: -80.93 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.31 Total: -52.35 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 1.71 Total: 52.94 kcal Total: -79.44 1.97 -77.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.315 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds