Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00353 * 2 1 4 4 H 1.48498 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47048 * 300.00251 * 3 2 1 6 6 H 1.48500 * 109.46683 * 59.99863 * 3 2 1 7 7 C 1.37874 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00465 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00078 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64226 * 56.85722 * 9 7 2 11 11 C 1.55160 * 110.71803 * 293.51953 * 9 7 2 12 12 C 1.54903 * 101.58191 * 206.13464 * 11 9 7 13 13 N 1.47749 * 104.84253 * 37.09485 * 12 11 9 14 14 C 1.34779 * 125.81960 * 155.82938 * 13 12 11 15 15 O 1.21285 * 119.99679 * 179.91152 * 14 13 12 16 16 C 1.50697 * 120.00387 * 359.90627 * 14 13 12 17 17 H 1.09005 * 115.54766 * 94.53612 * 16 14 13 18 18 C 1.53021 * 117.50390 * 308.85904 * 16 14 13 19 19 C 1.52788 * 117.50539 * 240.21998 * 16 14 13 20 20 C 1.53189 * 117.77277 * 215.08103 * 19 16 14 21 21 C 1.53460 * 107.60791 * 190.59563 * 20 19 16 22 22 C 1.52585 * 109.06208 * 294.09309 * 21 20 19 23 23 C 1.50456 * 111.37538 * 54.13542 * 22 21 20 24 24 C 1.38805 * 118.43676 * 158.64014 * 23 22 21 25 25 C 1.37983 * 120.40821 * 179.69306 * 24 23 22 26 26 C 1.38264 * 119.99491 * 0.02562 * 25 24 23 27 27 C 1.38106 * 119.74089 * 0.12014 * 26 25 24 28 28 C 1.37925 * 122.12158 * 338.58565 * 23 22 21 29 29 C 1.47025 * 108.52904 * 335.75216 * 13 12 11 30 30 H 0.97002 * 120.00068 * 0.02562 * 1 2 3 31 31 H 0.96699 * 113.99395 * 303.14521 * 10 9 7 32 32 H 1.08999 * 111.00219 * 324.20898 * 11 9 7 33 33 H 1.08997 * 111.00410 * 88.05660 * 11 9 7 34 34 H 1.09005 * 110.36713 * 155.85066 * 12 11 9 35 35 H 1.09000 * 110.37146 * 278.06283 * 12 11 9 36 36 H 1.09002 * 117.50649 * 359.97438 * 18 16 14 37 37 H 1.08994 * 117.50979 * 145.01212 * 18 16 14 38 38 H 1.08989 * 109.83388 * 310.12385 * 20 19 16 39 39 H 1.09004 * 109.83214 * 71.07741 * 20 19 16 40 40 H 1.09006 * 109.54141 * 53.96547 * 21 20 19 41 41 H 1.09000 * 109.54487 * 174.13298 * 21 20 19 42 42 H 1.08994 * 109.09859 * 174.62561 * 22 21 20 43 43 H 1.08998 * 109.09211 * 293.64521 * 22 21 20 44 44 H 1.07998 * 119.79251 * 359.71085 * 24 23 22 45 45 H 1.07996 * 120.00602 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.12745 * 180.14668 * 26 25 24 47 47 H 1.07995 * 119.88121 * 179.97438 * 27 26 25 48 48 H 1.08999 * 109.87570 * 241.68437 * 29 13 12 49 49 H 1.08991 * 109.88074 * 120.67439 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.3663 -2.5702 -1.1195 11 6 0.4744 -2.6847 1.3310 12 6 0.3790 -4.2280 1.4228 13 7 1.6683 -4.7190 0.8940 14 6 2.2368 -5.9073 1.1793 15 8 3.3024 -6.2047 0.6823 16 6 1.5485 -6.8664 2.1160 17 1 0.9243 -7.6224 1.6396 18 6 1.0907 -6.3241 3.4718 19 6 2.2928 -7.2659 3.3891 20 6 2.1110 -8.6976 3.9028 21 6 2.7273 -8.7691 5.3063 22 6 4.2350 -8.5596 5.1998 23 6 4.5613 -7.2857 4.4689 24 6 5.8107 -6.7133 4.6639 25 6 6.1552 -5.5485 4.0092 26 6 5.2533 -4.9442 3.1530 27 6 4.0082 -5.5095 2.9591 28 6 3.6624 -6.6775 3.6178 29 6 2.2280 -3.6937 0.0012 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2682 -1.8419 -1.1662 32 1 1.0364 -2.2772 2.1714 33 1 -0.5166 -2.2349 1.2709 34 1 0.2527 -4.5393 2.4598 35 1 -0.4479 -4.5940 0.8143 36 1 1.2878 -5.2738 3.6864 37 1 0.1656 -6.7234 3.8874 38 1 1.0497 -8.9408 3.9521 39 1 2.6208 -9.3961 3.2392 40 1 2.2946 -7.9904 5.9346 41 1 2.5238 -9.7461 5.7447 42 1 4.6605 -8.5147 6.2023 43 1 4.6748 -9.4009 4.6643 44 1 6.5176 -7.1826 5.3320 45 1 7.1289 -5.1086 4.1660 46 1 5.5215 -4.0338 2.6377 47 1 3.3018 -5.0391 2.2913 48 1 2.3249 -4.0940 -1.0080 49 1 3.2033 -3.3748 0.3685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = -20.142609 kcal Electronic energy + Delta-G solvation = -31119.854349 eV Core-core repulsion = 27205.608899 eV Total energy + Delta-G solvation = -3914.245450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15613 -39.10970 -37.46259 -36.89195 -34.79660 -34.29511 -32.18374 -30.60465 -30.24342 -29.77885 -28.43788 -27.25833 -25.43679 -23.86748 -23.05282 -22.75836 -21.84531 -21.25580 -19.79975 -19.15915 -18.52830 -17.24602 -16.79956 -15.93590 -15.80141 -15.64658 -15.23490 -15.04559 -14.95274 -14.34477 -14.18708 -13.72443 -13.66697 -13.46437 -13.10320 -13.03066 -12.83760 -12.65449 -12.29640 -12.19262 -12.00234 -11.69177 -11.59584 -11.44878 -11.40760 -11.35535 -11.19369 -10.93228 -10.74565 -10.62498 -10.49501 -10.39255 -10.32969 -10.17180 -10.00495 -9.47250 -9.29439 -8.70397 -8.52411 -8.29567 -8.23524 -8.00545 -6.33337 -4.40411 1.48321 1.61118 2.95362 3.16416 3.25592 3.28631 3.33782 3.64645 4.07953 4.23774 4.41716 4.51286 4.61927 4.68129 4.86295 4.93826 5.03764 5.08335 5.14992 5.21595 5.32358 5.37652 5.51215 5.53060 5.60477 5.64516 5.66717 5.72417 5.76947 5.79726 5.87664 5.91068 5.94088 6.02680 6.04151 6.13174 6.20818 6.23005 6.26614 6.43084 6.63661 6.66968 6.77592 6.84417 6.87128 6.93369 7.20597 7.26363 7.30249 7.70090 7.96366 8.04152 8.57252 8.62871 9.28190 9.42043 10.74517 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.003494 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.541093 B = 8011.755490 C = 8962.182795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.089 3.911 13 N -0.608 5.608 14 C 0.554 3.446 15 O -0.544 6.544 16 C -0.166 4.166 17 H 0.134 0.866 18 C -0.155 4.155 19 C -0.055 4.055 20 C -0.081 4.081 21 C -0.115 4.115 22 C -0.078 4.078 23 C -0.075 4.075 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.102 4.102 28 C -0.046 4.046 29 C 0.121 3.879 30 H 0.269 0.731 31 H 0.386 0.614 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.138 0.862 48 H 0.061 0.939 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -14.067 11.811 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.397 6.397 11 C -0.176 4.176 12 C -0.033 4.033 13 N -0.341 5.341 14 C 0.343 3.657 15 O -0.423 6.423 16 C -0.187 4.187 17 H 0.152 0.848 18 C -0.192 4.192 19 C -0.056 4.056 20 C -0.118 4.118 21 C -0.152 4.152 22 C -0.115 4.115 23 C -0.075 4.075 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.120 4.120 28 C -0.046 4.046 29 C -0.001 4.001 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.155 0.845 48 H 0.079 0.921 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.742 -14.712 11.432 18.832 hybrid contribution 0.059 1.578 -0.062 1.581 sum 2.801 -13.134 11.370 17.596 Atomic orbital electron populations 1.69578 1.05964 1.27643 1.50560 1.24977 0.95021 0.99543 0.93433 0.86363 0.80200 0.82705 0.77748 1.19569 1.20730 1.20789 1.21588 0.93757 0.90233 1.51688 0.91688 1.19418 0.86150 0.90665 0.82909 1.86098 1.51486 1.53316 1.48796 1.23312 1.02831 0.90430 1.01038 1.22738 0.85086 0.97393 0.98062 1.48851 1.22637 1.16168 1.46462 1.18868 0.84674 0.80668 0.81439 1.90763 1.21675 1.75806 1.54045 1.22383 1.04280 1.02190 0.89849 0.84833 1.23437 0.97925 0.99929 0.97879 1.20210 0.90806 0.96046 0.98538 1.21255 1.01016 0.93059 0.96497 1.21470 0.95051 1.01850 0.96829 1.20339 0.96573 0.94963 0.99582 1.19481 0.93783 0.96604 0.97673 1.20968 0.96044 0.96729 1.01272 1.21030 0.99287 0.96022 0.97419 1.21094 0.94017 1.00199 0.98429 1.21797 0.97903 0.95209 0.97053 1.18613 0.93329 0.95213 0.97464 1.22098 0.97416 0.87662 0.92899 0.92136 0.76173 0.91512 0.89635 0.91257 0.91881 0.87557 0.87371 0.90985 0.90887 0.91413 0.91346 0.91049 0.90886 0.86571 0.86457 0.86147 0.84467 0.92066 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.62 10.70 55.43 0.59 -22.02 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -13.72 8.21 -34.44 -0.28 -14.00 16 8 H 0.06 1.68 7.53 -52.48 -0.40 1.29 16 9 C 0.25 5.88 0.86 -89.93 -0.08 5.80 16 10 O -0.59 -14.62 13.09 -35.23 -0.46 -15.08 16 11 C -0.14 -2.86 5.68 -24.58 -0.14 -3.00 16 12 C 0.09 1.57 6.62 -2.35 -0.02 1.55 16 13 N -0.61 -11.69 2.86 -172.66 -0.49 -12.18 16 14 C 0.55 10.29 4.27 -10.99 -0.05 10.24 16 15 O -0.54 -11.87 15.16 5.55 0.08 -11.79 16 16 C -0.17 -2.36 5.46 -91.87 -0.50 -2.87 16 17 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 18 C -0.15 -1.86 7.56 -26.76 -0.20 -2.06 16 19 C -0.06 -0.72 2.24 -155.66 -0.35 -1.07 16 20 C -0.08 -0.80 5.73 -26.40 -0.15 -0.96 16 21 C -0.11 -1.01 5.92 -26.71 -0.16 -1.17 16 22 C -0.08 -0.77 5.66 -28.21 -0.16 -0.93 16 23 C -0.08 -1.01 5.75 -104.65 -0.60 -1.61 16 24 C -0.13 -1.71 9.63 -39.47 -0.38 -2.09 16 25 C -0.12 -1.66 10.04 -39.67 -0.40 -2.06 16 26 C -0.12 -1.95 10.06 -39.62 -0.40 -2.35 16 27 C -0.10 -1.78 6.95 -39.54 -0.27 -2.05 16 28 C -0.05 -0.71 5.47 -104.60 -0.57 -1.28 16 29 C 0.12 2.68 6.21 -3.06 -0.02 2.66 16 30 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.39 9.71 6.98 45.56 0.32 10.03 16 32 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 33 H 0.09 1.86 7.77 -51.93 -0.40 1.45 16 34 H 0.07 1.02 4.72 -51.93 -0.25 0.77 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.11 1.42 6.72 -51.93 -0.35 1.07 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.58 8.04 -51.94 -0.42 0.16 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 47 H 0.14 2.61 3.56 -56.70 -0.20 2.41 16 48 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 49 H 0.07 1.59 7.63 -51.93 -0.40 1.19 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -28.91 376.88 -11.15 -40.06 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.71 Total: 15.84 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -4.82 Total: -15.49 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.10 Total: -34.21 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.38 Total: -26.87 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.91 -11.15 -40.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.920 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds