Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00353 * 2 1 4 4 H 1.48498 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47048 * 300.00251 * 3 2 1 6 6 H 1.48500 * 109.46683 * 59.99863 * 3 2 1 7 7 C 1.37874 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00465 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00078 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64226 * 56.85722 * 9 7 2 11 11 C 1.55160 * 110.71803 * 293.51953 * 9 7 2 12 12 C 1.54903 * 101.58191 * 206.13464 * 11 9 7 13 13 N 1.47749 * 104.84253 * 37.09485 * 12 11 9 14 14 C 1.34779 * 125.81960 * 155.82938 * 13 12 11 15 15 O 1.21285 * 119.99679 * 179.91152 * 14 13 12 16 16 C 1.50697 * 120.00387 * 359.90627 * 14 13 12 17 17 H 1.09005 * 115.54766 * 94.53612 * 16 14 13 18 18 C 1.53021 * 117.50390 * 308.85904 * 16 14 13 19 19 C 1.52788 * 117.50539 * 240.21998 * 16 14 13 20 20 C 1.53189 * 117.77277 * 215.08103 * 19 16 14 21 21 C 1.53460 * 107.60791 * 190.59563 * 20 19 16 22 22 C 1.52585 * 109.06208 * 294.09309 * 21 20 19 23 23 C 1.50456 * 111.37538 * 54.13542 * 22 21 20 24 24 C 1.38805 * 118.43676 * 158.64014 * 23 22 21 25 25 C 1.37983 * 120.40821 * 179.69306 * 24 23 22 26 26 C 1.38264 * 119.99491 * 0.02562 * 25 24 23 27 27 C 1.38106 * 119.74089 * 0.12014 * 26 25 24 28 28 C 1.37925 * 122.12158 * 338.58565 * 23 22 21 29 29 C 1.47025 * 108.52904 * 335.75216 * 13 12 11 30 30 H 0.97002 * 120.00068 * 0.02562 * 1 2 3 31 31 H 0.96699 * 113.99395 * 303.14521 * 10 9 7 32 32 H 1.08999 * 111.00219 * 324.20898 * 11 9 7 33 33 H 1.08997 * 111.00410 * 88.05660 * 11 9 7 34 34 H 1.09005 * 110.36713 * 155.85066 * 12 11 9 35 35 H 1.09000 * 110.37146 * 278.06283 * 12 11 9 36 36 H 1.09002 * 117.50649 * 359.97438 * 18 16 14 37 37 H 1.08994 * 117.50979 * 145.01212 * 18 16 14 38 38 H 1.08989 * 109.83388 * 310.12385 * 20 19 16 39 39 H 1.09004 * 109.83214 * 71.07741 * 20 19 16 40 40 H 1.09006 * 109.54141 * 53.96547 * 21 20 19 41 41 H 1.09000 * 109.54487 * 174.13298 * 21 20 19 42 42 H 1.08994 * 109.09859 * 174.62561 * 22 21 20 43 43 H 1.08998 * 109.09211 * 293.64521 * 22 21 20 44 44 H 1.07998 * 119.79251 * 359.71085 * 24 23 22 45 45 H 1.07996 * 120.00602 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.12745 * 180.14668 * 26 25 24 47 47 H 1.07995 * 119.88121 * 179.97438 * 27 26 25 48 48 H 1.08999 * 109.87570 * 241.68437 * 29 13 12 49 49 H 1.08991 * 109.88074 * 120.67439 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.3663 -2.5702 -1.1195 11 6 0.4744 -2.6847 1.3310 12 6 0.3790 -4.2280 1.4228 13 7 1.6683 -4.7190 0.8940 14 6 2.2368 -5.9073 1.1793 15 8 3.3024 -6.2047 0.6823 16 6 1.5485 -6.8664 2.1160 17 1 0.9243 -7.6224 1.6396 18 6 1.0907 -6.3241 3.4718 19 6 2.2928 -7.2659 3.3891 20 6 2.1110 -8.6976 3.9028 21 6 2.7273 -8.7691 5.3063 22 6 4.2350 -8.5596 5.1998 23 6 4.5613 -7.2857 4.4689 24 6 5.8107 -6.7133 4.6639 25 6 6.1552 -5.5485 4.0092 26 6 5.2533 -4.9442 3.1530 27 6 4.0082 -5.5095 2.9591 28 6 3.6624 -6.6775 3.6178 29 6 2.2280 -3.6937 0.0012 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2682 -1.8419 -1.1662 32 1 1.0364 -2.2772 2.1714 33 1 -0.5166 -2.2349 1.2709 34 1 0.2527 -4.5393 2.4598 35 1 -0.4479 -4.5940 0.8143 36 1 1.2878 -5.2738 3.6864 37 1 0.1656 -6.7234 3.8874 38 1 1.0497 -8.9408 3.9521 39 1 2.6208 -9.3961 3.2392 40 1 2.2946 -7.9904 5.9346 41 1 2.5238 -9.7461 5.7447 42 1 4.6605 -8.5147 6.2023 43 1 4.6748 -9.4009 4.6643 44 1 6.5176 -7.1826 5.3320 45 1 7.1289 -5.1086 4.1660 46 1 5.5215 -4.0338 2.6377 47 1 3.3018 -5.0391 2.2913 48 1 2.3249 -4.0940 -1.0080 49 1 3.2033 -3.3748 0.3685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = -36.109555 kcal Electronic energy + Delta-G solvation = -31120.546728 eV Core-core repulsion = 27205.608899 eV Total energy + Delta-G solvation = -3914.937829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35546 -40.46569 -39.02887 -38.06207 -36.15598 -35.64479 -34.18146 -31.76972 -31.40353 -31.21709 -30.12199 -28.30949 -27.11556 -25.30046 -24.03931 -23.71435 -23.31080 -22.30136 -21.49409 -20.54221 -19.57963 -19.18402 -18.18761 -17.37447 -17.01046 -16.91097 -16.77232 -16.44373 -16.08685 -15.92817 -15.64460 -14.99270 -14.77041 -14.62031 -14.56917 -14.16811 -13.88266 -13.86009 -13.71106 -13.59612 -13.29899 -13.28573 -13.17015 -12.98358 -12.78813 -12.68746 -12.43397 -12.30370 -12.24871 -12.07608 -11.97144 -11.86439 -11.34543 -11.31619 -11.27012 -10.96637 -10.79323 -10.62930 -10.16075 -9.78483 -9.49951 -9.34695 -8.29172 -6.43065 0.38462 0.47917 1.37108 1.41535 1.51337 1.52998 1.91377 2.36364 2.53979 2.96169 3.00427 3.34547 3.53214 3.71740 3.72601 3.79634 3.91163 3.95933 4.08065 4.11673 4.17603 4.29570 4.32632 4.35603 4.39574 4.47480 4.54539 4.59180 4.64162 4.67248 4.77427 4.86002 4.89009 4.95459 5.01000 5.06693 5.08475 5.12628 5.14216 5.20878 5.22055 5.32614 5.42566 5.47905 5.48594 5.59433 5.66635 5.72924 5.74745 6.02132 6.13080 6.52984 6.61152 7.09734 7.27918 7.41781 8.77534 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.003494 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.541093 B = 8011.755490 C = 8962.182795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.039 3.961 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.048 0.952 9 C 0.239 3.761 10 O -0.594 6.594 11 C -0.127 4.127 12 C 0.101 3.899 13 N -0.610 5.610 14 C 0.553 3.447 15 O -0.585 6.585 16 C -0.181 4.181 17 H 0.159 0.841 18 C -0.137 4.137 19 C -0.056 4.056 20 C -0.078 4.078 21 C -0.111 4.111 22 C -0.079 4.079 23 C -0.078 4.078 24 C -0.132 4.132 25 C -0.123 4.123 26 C -0.152 4.152 27 C -0.133 4.133 28 C -0.064 4.064 29 C 0.130 3.870 30 H 0.274 0.726 31 H 0.383 0.617 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.151 0.849 45 H 0.139 0.861 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.039 0.961 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -16.421 14.742 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.162 4.162 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.602 4.602 8 H 0.067 0.933 9 C 0.199 3.801 10 O -0.405 6.405 11 C -0.166 4.166 12 C -0.021 4.021 13 N -0.343 5.343 14 C 0.345 3.655 15 O -0.467 6.467 16 C -0.201 4.201 17 H 0.177 0.823 18 C -0.174 4.174 19 C -0.056 4.056 20 C -0.115 4.115 21 C -0.148 4.148 22 C -0.115 4.115 23 C -0.078 4.078 24 C -0.150 4.150 25 C -0.141 4.141 26 C -0.170 4.170 27 C -0.151 4.151 28 C -0.064 4.064 29 C 0.007 3.993 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.167 0.833 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.123 0.877 47 H 0.132 0.868 48 H 0.058 0.942 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.721 -17.075 14.377 22.388 hybrid contribution 0.468 2.331 -0.998 2.578 sum 2.189 -14.744 13.379 20.029 Atomic orbital electron populations 1.69621 1.06472 1.28492 1.49934 1.25555 0.95883 1.01846 0.92915 0.85509 0.78653 0.79417 0.78046 1.20294 1.20223 1.19830 1.21763 0.93321 0.91918 1.53191 0.93327 1.19533 0.86456 0.90328 0.83831 1.86083 1.51555 1.53091 1.49725 1.23082 1.01542 0.93073 0.98872 1.22737 0.84373 0.94711 1.00247 1.48880 1.23138 1.16135 1.46146 1.19718 0.84127 0.80485 0.81151 1.90726 1.23616 1.76636 1.55748 1.22407 1.05680 1.02145 0.89885 0.82343 1.23554 0.99215 0.99133 0.95482 1.20466 0.89851 0.98146 0.97156 1.21349 1.02932 0.90317 0.96913 1.21494 0.93802 1.03444 0.96078 1.20468 0.97968 0.92944 1.00165 1.20016 0.93334 0.97647 0.96777 1.21426 0.96657 0.96002 1.00920 1.21299 0.99647 0.96515 0.96653 1.21180 0.94988 1.00653 1.00179 1.21780 0.98062 0.96958 0.98291 1.18952 0.95215 0.94606 0.97633 1.21753 0.96750 0.88369 0.92473 0.91665 0.76534 0.92521 0.90317 0.87746 0.90963 0.89328 0.83272 0.88248 0.91296 0.91476 0.88458 0.88955 0.89978 0.83180 0.84284 0.87691 0.86848 0.94242 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.11 10.70 21.45 0.23 -45.88 16 2 C 0.04 2.03 5.28 84.65 0.45 2.47 16 3 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.56 -30.36 8.21 25.60 0.21 -30.15 16 8 H 0.05 2.69 7.53 -2.91 -0.02 2.67 16 9 C 0.24 11.80 0.86 -10.35 -0.01 11.79 16 10 O -0.59 -30.71 13.09 -148.98 -1.95 -32.66 16 11 C -0.13 -5.42 5.68 31.99 0.18 -5.24 16 12 C 0.10 3.50 6.62 86.79 0.57 4.07 16 13 N -0.61 -24.35 2.86 -818.57 -2.34 -26.70 16 14 C 0.55 21.11 4.27 87.66 0.37 21.49 16 15 O -0.59 -27.04 15.16 -3.05 -0.05 -27.08 16 16 C -0.18 -4.85 5.46 -11.60 -0.06 -4.91 16 17 H 0.16 3.44 8.14 -2.38 -0.02 3.42 16 18 C -0.14 -2.90 7.56 30.58 0.23 -2.67 16 19 C -0.06 -1.32 2.24 -52.93 -0.12 -1.44 16 20 C -0.08 -1.22 5.73 30.81 0.18 -1.04 16 21 C -0.11 -1.42 5.92 30.61 0.18 -1.24 16 22 C -0.08 -1.24 5.66 29.63 0.17 -1.07 16 23 C -0.08 -1.92 5.75 -19.88 -0.11 -2.03 16 24 C -0.13 -3.17 9.63 22.34 0.22 -2.95 16 25 C -0.12 -3.43 10.04 22.22 0.22 -3.21 16 26 C -0.15 -5.32 10.06 22.24 0.22 -5.10 16 27 C -0.13 -4.88 6.95 22.30 0.15 -4.72 16 28 C -0.06 -1.92 5.47 -19.85 -0.11 -2.02 16 29 C 0.13 6.18 6.21 86.73 0.54 6.72 16 30 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 31 H 0.38 19.85 6.98 -74.06 -0.52 19.33 16 32 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 33 H 0.08 3.45 7.77 -2.39 -0.02 3.44 16 34 H 0.10 2.89 4.72 -2.38 -0.01 2.88 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.09 2.22 6.72 -2.39 -0.02 2.21 16 37 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 1.04 8.04 -2.39 -0.02 1.02 16 39 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 0.90 8.13 -2.38 -0.02 0.88 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 1.10 8.10 -2.39 -0.02 1.08 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 46 H 0.10 3.77 8.06 -2.91 -0.02 3.75 16 47 H 0.11 4.63 3.56 -6.87 -0.02 4.60 16 48 H 0.04 2.00 8.07 -2.39 -0.02 1.98 16 49 H 0.05 2.62 7.63 -2.39 -0.02 2.60 16 Total: -1.00 -67.49 376.88 1.84 -65.65 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: 0.44 Total: 44.18 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.49 Total: -21.26 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.12 Total: -72.58 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -2.00 Total: -59.75 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -67.49 1.84 -65.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.541 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds