Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47245 * 2 1 4 4 C 1.34234 * 116.99776 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00382 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99490 * 180.02562 * 4 3 2 7 7 C 1.53006 * 110.05700 * 301.41062 * 6 4 3 8 8 C 1.54261 * 110.03593 * 62.83142 * 6 4 3 9 9 C 1.54888 * 104.19672 * 142.89104 * 8 6 4 10 10 C 1.54891 * 102.75120 * 322.06034 * 9 8 6 11 11 C 1.53876 * 110.03013 * 180.02562 * 6 4 3 12 12 H 1.08995 * 110.03160 * 359.97438 * 11 6 4 13 13 N 1.46498 * 110.03560 * 121.42784 * 11 6 4 14 14 C 1.34773 * 120.00000 * 204.99827 * 13 11 6 15 15 O 1.21585 * 120.00171 * 0.02562 * 14 13 11 16 16 N 1.34782 * 119.99846 * 180.02562 * 14 13 11 17 17 C 1.46496 * 120.00002 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47322 * 179.97438 * 17 16 14 19 19 O 1.21292 * 119.99610 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00318 * 179.97438 * 18 17 16 21 21 C 1.37089 * 120.00101 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00605 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99978 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99917 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47257 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47374 * 119.99443 * 25 23 21 28 28 H 1.48506 * 109.47129 * 239.99382 * 25 23 21 29 29 H 1.09002 * 109.46675 * 300.00247 * 1 2 3 30 30 H 1.09000 * 109.46895 * 59.99942 * 1 2 3 31 31 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47169 * 239.99729 * 2 1 3 33 33 H 1.09003 * 109.47385 * 120.00073 * 2 1 3 34 34 H 1.08991 * 109.47237 * 298.59052 * 7 6 4 35 35 H 1.08999 * 109.46650 * 58.58617 * 7 6 4 36 36 H 1.08996 * 109.47135 * 178.58676 * 7 6 4 37 37 H 1.09000 * 110.48928 * 261.57113 * 8 6 4 38 38 H 1.08999 * 110.48469 * 24.21522 * 8 6 4 39 39 H 1.09005 * 110.75648 * 80.37263 * 9 8 6 40 40 H 1.09004 * 110.75897 * 203.55715 * 9 8 6 41 41 H 1.09004 * 110.48613 * 279.26383 * 10 9 8 42 42 H 1.08994 * 110.48745 * 156.61801 * 10 9 8 43 43 H 0.97001 * 119.99955 * 25.00290 * 13 11 6 44 44 H 0.96999 * 119.99708 * 359.97438 * 16 14 13 45 45 H 1.09000 * 109.47011 * 299.99401 * 17 16 14 46 46 H 1.08996 * 109.47509 * 59.99334 * 17 16 14 47 47 H 0.97006 * 119.99908 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4286 3.7093 -1.2259 8 6 3.5119 3.6779 1.2900 9 6 4.7591 4.5202 1.6561 10 6 5.9299 3.5748 1.2888 11 6 5.4582 2.8718 -0.0014 12 1 5.7876 1.8329 -0.0020 13 7 5.9891 3.5684 -1.1758 14 6 7.2003 3.2371 -1.6652 15 8 7.8522 2.3599 -1.1325 16 7 7.6890 3.8783 -2.7454 17 6 9.0053 3.5179 -3.2778 18 6 9.3143 4.3762 -4.4774 19 8 8.5133 5.2069 -4.8511 20 7 10.4804 4.2208 -5.1350 21 6 10.7611 5.0012 -6.2265 22 1 10.0477 5.7403 -6.5599 23 6 11.9632 4.8405 -6.9048 24 7 12.8311 3.9409 -6.4996 25 14 12.3460 5.9044 -8.3917 26 1 11.2143 6.8332 -8.6404 27 1 13.5819 6.6869 -8.1356 28 1 12.5460 5.0386 -9.5816 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7652 3.2053 -2.1318 35 1 2.3394 3.7500 -1.2163 36 1 3.8303 4.7222 -1.2029 37 1 2.6555 4.3257 1.1029 38 1 3.2863 2.9655 2.0836 39 1 4.7977 5.4322 1.0604 40 1 4.7679 4.7551 2.7204 41 1 6.0948 2.8458 2.0823 42 1 6.8380 4.1475 1.1008 43 1 5.4689 4.2680 -1.6010 44 1 7.1688 4.5779 -3.1706 45 1 9.7636 3.6780 -2.5112 46 1 9.0031 2.4687 -3.5730 47 1 11.1208 3.5561 -4.8363 48 1 13.6704 3.8290 -6.9728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595862727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -158.384627 kcal Electronic energy + Delta-G solvation = -30070.200791 eV Core-core repulsion = 25739.111454 eV Total energy + Delta-G solvation = -4331.089337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44387 -39.94566 -38.66908 -37.90156 -36.77385 -34.38854 -33.68915 -33.48399 -32.46300 -31.46710 -31.35138 -28.51217 -26.88544 -26.34246 -24.52196 -24.06397 -22.40206 -21.41140 -20.49167 -19.66482 -19.38406 -18.60691 -17.99941 -17.68816 -16.88053 -16.80888 -16.39029 -15.60140 -15.42358 -15.06608 -14.84623 -14.64267 -14.39082 -14.22096 -14.05433 -13.82174 -13.62974 -13.53255 -13.26565 -13.11898 -12.84662 -12.38189 -12.29865 -12.15293 -12.11007 -11.98549 -11.68247 -11.62117 -11.52702 -11.27211 -11.16838 -11.12729 -10.97617 -10.88354 -10.44192 -10.39996 -10.31289 -9.95995 -9.63166 -9.11609 -8.60424 -8.57970 -8.08260 -6.49836 -3.91772 1.90957 2.21221 2.88158 3.11237 3.23317 3.30065 3.43041 3.77221 3.90056 4.09272 4.11513 4.27826 4.49491 4.53111 4.55043 4.59967 4.84393 4.87337 4.89458 4.92993 5.01601 5.18977 5.19511 5.23754 5.32304 5.36035 5.37364 5.43099 5.50800 5.55966 5.64012 5.73544 5.83700 5.93082 5.98045 6.03414 6.04584 6.10829 6.13776 6.57448 6.79300 7.11881 7.45104 7.47659 7.94417 8.27039 8.47111 8.84818 9.06405 9.41641 9.89457 10.67160 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.001979 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.882602 B =14147.737233 C =14563.183796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.354 6.354 4 C 0.473 3.527 5 O -0.496 6.496 6 C -0.064 4.064 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.124 4.124 10 C -0.134 4.134 11 C 0.167 3.833 12 H 0.117 0.883 13 N -0.744 5.744 14 C 0.704 3.296 15 O -0.593 6.593 16 N -0.725 5.725 17 C 0.129 3.871 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.025 3.975 24 N -0.894 5.894 25 Si 0.933 3.067 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.281 1.281 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.396 0.604 44 H 0.406 0.594 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.396 0.604 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.033 -2.883 16.571 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.271 6.271 4 C 0.315 3.685 5 O -0.382 6.382 6 C -0.065 4.065 7 C -0.203 4.203 8 C -0.145 4.145 9 C -0.162 4.162 10 C -0.173 4.173 11 C 0.061 3.939 12 H 0.134 0.866 13 N -0.402 5.402 14 C 0.404 3.596 15 O -0.471 6.471 16 N -0.382 5.382 17 C 0.000 4.000 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.185 5.185 21 C -0.434 4.434 22 H 0.124 0.876 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.234 0.766 44 H 0.243 0.757 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.230 0.770 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.533 -3.519 16.684 28.257 hybrid contribution 0.268 0.428 -1.019 1.137 sum -22.265 -3.090 15.665 27.398 Atomic orbital electron populations 1.21803 0.92478 1.03050 1.03541 1.23070 0.95432 0.80171 1.02786 1.86489 1.24202 1.32382 1.83991 1.23420 0.80682 0.92231 0.72187 1.90700 1.60193 1.42764 1.44572 1.21391 0.95837 0.89604 0.99718 1.21889 1.02430 1.00210 0.95753 1.22442 0.99160 0.98640 0.94252 1.22548 0.93709 0.98199 1.01722 1.22831 0.98798 0.98840 0.96797 1.21374 0.88302 0.99527 0.84649 0.86564 1.45354 1.19195 1.42562 1.33114 1.15856 0.81389 0.81867 0.80503 1.90916 1.59593 1.34290 1.62283 1.44758 1.20738 1.41855 1.30853 1.20779 0.84262 0.99249 0.95691 1.19774 0.84318 0.87691 0.86706 1.90484 1.48888 1.39269 1.69867 1.41795 1.15739 1.34419 1.26506 1.19772 1.02799 1.16319 1.04470 0.87643 1.25329 0.95538 0.97388 0.99548 1.69622 1.09333 1.33405 1.41093 0.85757 0.78532 0.79430 0.80353 1.19161 1.20630 1.20645 0.91466 0.91397 0.90188 0.91112 0.91169 0.91140 0.90516 0.90418 0.89733 0.90860 0.90857 0.90758 0.90486 0.90202 0.76620 0.75715 0.90002 0.90040 0.77006 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.35 -3.30 10.08 -39.27 -0.40 -3.70 16 4 C 0.47 5.25 6.44 36.01 0.23 5.48 16 5 O -0.50 -7.20 14.96 -18.74 -0.28 -7.48 16 6 C -0.06 -0.58 0.88 -154.54 -0.14 -0.71 16 7 C -0.15 -1.07 6.96 37.16 0.26 -0.81 16 8 C -0.11 -0.72 5.88 -25.08 -0.15 -0.87 16 9 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 10 C -0.13 -1.34 6.54 -25.04 -0.16 -1.51 16 11 C 0.17 1.97 2.82 -66.78 -0.19 1.78 16 12 H 0.12 1.80 5.82 -51.93 -0.30 1.49 16 13 N -0.74 -9.23 4.47 -57.55 -0.26 -9.48 16 14 C 0.70 11.79 8.56 -86.92 -0.74 11.05 16 15 O -0.59 -12.06 16.00 5.29 0.08 -11.98 16 16 N -0.72 -12.39 5.53 -66.42 -0.37 -12.76 16 17 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 18 C 0.43 9.94 7.85 -10.99 -0.09 9.85 16 19 O -0.60 -15.31 15.24 5.55 0.08 -15.23 16 20 N -0.55 -13.76 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 22 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 24 N -0.89 -24.06 13.05 55.50 0.72 -23.34 16 25 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 33 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.07 0.61 7.72 -51.93 -0.40 0.21 16 35 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.08 0.45 6.93 -51.93 -0.36 0.09 16 37 H 0.08 0.44 7.84 -51.93 -0.41 0.03 16 38 H 0.07 0.50 7.85 -51.93 -0.41 0.09 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 43 H 0.40 3.91 5.84 -40.82 -0.24 3.67 16 44 H 0.41 6.65 7.45 -40.82 -0.30 6.34 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 47 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -34.00 396.49 -7.64 -41.63 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -7.32 Total: 16.50 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: -0.81 Total: 18.06 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.04 Total: -59.39 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.51 Total: -38.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.00 -7.64 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595862727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.751 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds