Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47245 * 2 1 4 4 C 1.34234 * 116.99776 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00382 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99490 * 180.02562 * 4 3 2 7 7 C 1.53006 * 110.05700 * 301.41062 * 6 4 3 8 8 C 1.54261 * 110.03593 * 62.83142 * 6 4 3 9 9 C 1.54888 * 104.19672 * 142.89104 * 8 6 4 10 10 C 1.54891 * 102.75120 * 322.06034 * 9 8 6 11 11 C 1.53876 * 110.03013 * 180.02562 * 6 4 3 12 12 H 1.08995 * 110.03160 * 359.97438 * 11 6 4 13 13 N 1.46498 * 110.03560 * 121.42784 * 11 6 4 14 14 C 1.34773 * 120.00000 * 204.99827 * 13 11 6 15 15 O 1.21585 * 120.00171 * 0.02562 * 14 13 11 16 16 N 1.34782 * 119.99846 * 180.02562 * 14 13 11 17 17 C 1.46496 * 120.00002 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47322 * 179.97438 * 17 16 14 19 19 O 1.21292 * 119.99610 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00318 * 179.97438 * 18 17 16 21 21 C 1.37089 * 120.00101 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00605 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99978 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99917 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47257 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47374 * 119.99443 * 25 23 21 28 28 H 1.48506 * 109.47129 * 239.99382 * 25 23 21 29 29 H 1.09002 * 109.46675 * 300.00247 * 1 2 3 30 30 H 1.09000 * 109.46895 * 59.99942 * 1 2 3 31 31 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47169 * 239.99729 * 2 1 3 33 33 H 1.09003 * 109.47385 * 120.00073 * 2 1 3 34 34 H 1.08991 * 109.47237 * 298.59052 * 7 6 4 35 35 H 1.08999 * 109.46650 * 58.58617 * 7 6 4 36 36 H 1.08996 * 109.47135 * 178.58676 * 7 6 4 37 37 H 1.09000 * 110.48928 * 261.57113 * 8 6 4 38 38 H 1.08999 * 110.48469 * 24.21522 * 8 6 4 39 39 H 1.09005 * 110.75648 * 80.37263 * 9 8 6 40 40 H 1.09004 * 110.75897 * 203.55715 * 9 8 6 41 41 H 1.09004 * 110.48613 * 279.26383 * 10 9 8 42 42 H 1.08994 * 110.48745 * 156.61801 * 10 9 8 43 43 H 0.97001 * 119.99955 * 25.00290 * 13 11 6 44 44 H 0.96999 * 119.99708 * 359.97438 * 16 14 13 45 45 H 1.09000 * 109.47011 * 299.99401 * 17 16 14 46 46 H 1.08996 * 109.47509 * 59.99334 * 17 16 14 47 47 H 0.97006 * 119.99908 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4286 3.7093 -1.2259 8 6 3.5119 3.6779 1.2900 9 6 4.7591 4.5202 1.6561 10 6 5.9299 3.5748 1.2888 11 6 5.4582 2.8718 -0.0014 12 1 5.7876 1.8329 -0.0020 13 7 5.9891 3.5684 -1.1758 14 6 7.2003 3.2371 -1.6652 15 8 7.8522 2.3599 -1.1325 16 7 7.6890 3.8783 -2.7454 17 6 9.0053 3.5179 -3.2778 18 6 9.3143 4.3762 -4.4774 19 8 8.5133 5.2069 -4.8511 20 7 10.4804 4.2208 -5.1350 21 6 10.7611 5.0012 -6.2265 22 1 10.0477 5.7403 -6.5599 23 6 11.9632 4.8405 -6.9048 24 7 12.8311 3.9409 -6.4996 25 14 12.3460 5.9044 -8.3917 26 1 11.2143 6.8332 -8.6404 27 1 13.5819 6.6869 -8.1356 28 1 12.5460 5.0386 -9.5816 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7652 3.2053 -2.1318 35 1 2.3394 3.7500 -1.2163 36 1 3.8303 4.7222 -1.2029 37 1 2.6555 4.3257 1.1029 38 1 3.2863 2.9655 2.0836 39 1 4.7977 5.4322 1.0604 40 1 4.7679 4.7551 2.7204 41 1 6.0948 2.8458 2.0823 42 1 6.8380 4.1475 1.1008 43 1 5.4689 4.2680 -1.6010 44 1 7.1688 4.5779 -3.1706 45 1 9.7636 3.6780 -2.5112 46 1 9.0031 2.4687 -3.5730 47 1 11.1208 3.5561 -4.8363 48 1 13.6704 3.8290 -6.9728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595862727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = -182.509694 kcal Electronic energy + Delta-G solvation = -30071.246932 eV Core-core repulsion = 25739.111454 eV Total energy + Delta-G solvation = -4332.135478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.32732 -41.18601 -40.17978 -39.19188 -37.65275 -36.23965 -35.28366 -34.65213 -33.36179 -33.09806 -32.07176 -29.76173 -28.19094 -27.00649 -26.30771 -24.82120 -23.18072 -22.38632 -21.46053 -21.37335 -20.40686 -20.14012 -19.75060 -18.52415 -17.81952 -17.61941 -17.49377 -17.33444 -16.83178 -16.46750 -16.26716 -15.84584 -15.73013 -15.38899 -15.20486 -15.09120 -14.85281 -14.41529 -14.03988 -13.91436 -13.68156 -13.65525 -13.54979 -13.43783 -13.06625 -12.95168 -12.91786 -12.65212 -12.55506 -12.44115 -12.23720 -12.10686 -11.96981 -11.92215 -11.60985 -11.57661 -11.56690 -11.42331 -11.25465 -10.55442 -10.43687 -10.10228 -9.85320 -8.50760 -6.01018 1.05067 1.35375 1.35451 1.43569 1.57438 1.72480 1.89506 2.09609 2.28874 3.02951 3.13022 3.16457 3.30145 3.42278 3.66115 3.84926 3.97230 4.05647 4.19432 4.21471 4.22784 4.29434 4.31904 4.42496 4.45237 4.51862 4.61267 4.71024 4.77003 4.85151 4.87724 4.91762 4.99539 5.11970 5.14663 5.19071 5.22057 5.30806 5.34197 5.39210 5.40352 5.52815 5.90632 5.94190 6.48017 6.61572 7.01284 7.03585 7.42773 7.52713 7.94158 8.66437 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.001979 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.882602 B =14147.737233 C =14563.183796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.472 3.528 5 O -0.540 6.540 6 C -0.059 4.059 7 C -0.146 4.146 8 C -0.099 4.099 9 C -0.114 4.114 10 C -0.134 4.134 11 C 0.162 3.838 12 H 0.075 0.925 13 N -0.723 5.723 14 C 0.703 3.297 15 O -0.631 6.631 16 N -0.722 5.722 17 C 0.141 3.859 18 C 0.435 3.565 19 O -0.622 6.622 20 N -0.560 5.560 21 C -0.336 4.336 22 H 0.088 0.912 23 C -0.013 4.013 24 N -0.917 5.917 25 Si 0.999 3.001 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.412 0.588 44 H 0.411 0.589 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.398 0.602 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.930 -1.394 16.988 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.316 3.684 5 O -0.429 6.429 6 C -0.061 4.061 7 C -0.203 4.203 8 C -0.137 4.137 9 C -0.151 4.151 10 C -0.173 4.173 11 C 0.056 3.944 12 H 0.093 0.907 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.512 6.512 16 N -0.380 5.380 17 C 0.013 3.987 18 C 0.222 3.778 19 O -0.510 6.510 20 N -0.195 5.195 21 C -0.465 4.465 22 H 0.106 0.894 23 C -0.213 4.213 24 N -0.557 5.557 25 Si 0.822 3.178 26 H -0.193 1.193 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.252 0.748 44 H 0.249 0.751 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.232 0.768 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.492 -2.009 17.119 29.949 hybrid contribution 0.794 -0.117 -1.097 1.360 sum -23.697 -2.126 16.022 28.684 Atomic orbital electron populations 1.21810 0.89919 1.04348 1.03999 1.23316 0.97389 0.79364 1.02272 1.86492 1.23087 1.33360 1.83381 1.23889 0.80975 0.92602 0.70919 1.90691 1.61210 1.44304 1.46729 1.21429 0.93497 0.89018 1.02136 1.21952 1.03780 1.00669 0.93922 1.22482 0.99945 0.98636 0.92630 1.22533 0.91806 0.97660 1.03078 1.22791 0.99601 0.99227 0.95694 1.21412 0.90510 0.97471 0.85000 0.90687 1.45201 1.17664 1.42375 1.32965 1.15974 0.82250 0.81337 0.80131 1.90893 1.61001 1.35997 1.63344 1.44638 1.20145 1.42110 1.31070 1.20575 0.85583 0.98484 0.94090 1.20357 0.83273 0.87185 0.86955 1.90460 1.49443 1.40345 1.70744 1.41844 1.16476 1.34607 1.26596 1.19787 1.03396 1.17248 1.06067 0.89427 1.26160 0.94875 0.98371 1.01909 1.69690 1.09685 1.34198 1.42125 0.84788 0.78306 0.77789 0.76946 1.19297 1.19640 1.19744 0.90694 0.91160 0.88500 0.92117 0.91381 0.92764 0.88583 0.88300 0.86898 0.90827 0.89602 0.89011 0.90896 0.91808 0.74807 0.75119 0.89044 0.89453 0.76753 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.35 -6.13 10.08 -51.45 -0.52 -6.65 16 4 C 0.47 10.43 6.44 71.24 0.46 10.89 16 5 O -0.54 -16.48 14.96 21.98 0.33 -16.15 16 6 C -0.06 -0.99 0.88 -52.20 -0.05 -1.04 16 7 C -0.15 -1.81 6.96 71.98 0.50 -1.31 16 8 C -0.10 -1.05 5.88 31.67 0.19 -0.87 16 9 C -0.11 -1.27 6.91 31.89 0.22 -1.05 16 10 C -0.13 -2.63 6.54 31.69 0.21 -2.43 16 11 C 0.16 3.82 2.82 45.74 0.13 3.95 16 12 H 0.08 2.47 5.82 -2.39 -0.01 2.45 16 13 N -0.72 -17.70 4.47 -454.27 -2.03 -19.73 16 14 C 0.70 23.75 8.56 179.05 1.53 25.28 16 15 O -0.63 -26.42 16.00 -3.98 -0.06 -26.48 16 16 N -0.72 -24.57 5.53 -482.30 -2.67 -27.24 16 17 C 0.14 5.39 6.15 85.63 0.53 5.92 16 18 C 0.44 20.32 7.85 87.66 0.69 21.01 16 19 O -0.62 -32.02 15.24 -3.07 -0.05 -32.07 16 20 N -0.56 -28.45 5.29 -306.99 -1.62 -30.07 16 21 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 22 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 25 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.05 0.87 7.72 -2.39 -0.02 0.85 16 35 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 36 H 0.10 0.81 6.93 -2.39 -0.02 0.80 16 37 H 0.11 0.64 7.84 -2.39 -0.02 0.63 16 38 H 0.07 0.81 7.85 -2.39 -0.02 0.80 16 39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 42 H 0.06 1.45 8.04 -2.39 -0.02 1.44 16 43 H 0.41 7.51 5.84 -92.71 -0.54 6.97 16 44 H 0.41 13.24 7.45 -92.71 -0.69 12.55 16 45 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 47 H 0.40 19.59 7.90 -92.70 -0.73 18.86 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -75.33 396.49 1.61 -73.72 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: -0.95 Total: 46.44 kcal Atomic # 6 Polarization: 36.32 SS G_CDS: 6.87 Total: 43.19 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.04 Total: -125.95 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -0.30 Total: -81.35 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -75.33 1.61 -73.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595862727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.788 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds