Wall clock time and date at job start Sat Apr 11 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46729 * 2 1 4 4 C 1.53001 * 109.47100 * 240.00286 * 2 1 3 5 5 C 1.52998 * 109.46898 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47315 * 60.00041 * 5 4 2 7 7 H 1.09002 * 109.47442 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47417 * 59.99873 * 6 5 4 9 9 C 1.53007 * 109.47018 * 299.99521 * 6 5 4 10 10 H 1.08996 * 109.47393 * 300.00630 * 9 6 5 11 11 C 1.52995 * 109.47309 * 179.97438 * 9 6 5 12 12 H 1.08998 * 109.70333 * 188.25562 * 11 9 6 13 13 C 1.53185 * 109.59201 * 308.62277 * 11 9 6 14 14 C 1.53035 * 109.31663 * 174.42122 * 13 11 9 15 15 C 1.53042 * 109.53531 * 298.62958 * 14 13 11 16 16 C 1.53194 * 109.31140 * 61.36888 * 15 14 13 17 17 N 1.46925 * 108.77334 * 305.36077 * 16 15 14 18 18 C 1.34777 * 120.63211 * 233.61062 * 17 16 15 19 19 O 1.21277 * 120.00115 * 175.63755 * 18 17 16 20 20 C 1.50696 * 119.99831 * 355.63839 * 18 17 16 21 21 S 1.81006 * 109.47076 * 179.97438 * 20 18 17 22 22 C 1.76195 * 99.99835 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00456 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99828 * 179.97438 * 22 21 20 25 25 N 1.31629 * 119.99719 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99874 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46697 * 90.00141 * 26 24 22 28 28 H 1.48499 * 109.46855 * 209.99860 * 26 24 22 29 29 H 1.48500 * 109.47267 * 330.00243 * 26 24 22 30 30 C 1.52995 * 109.46944 * 119.99789 * 2 1 3 31 31 H 1.08995 * 109.47303 * 299.99763 * 1 2 3 32 32 H 1.09000 * 109.46919 * 60.00575 * 1 2 3 33 33 H 1.09005 * 109.46744 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46774 * 299.99828 * 4 2 1 35 35 H 1.08998 * 109.47528 * 59.99421 * 4 2 1 36 36 H 1.09000 * 109.46805 * 179.97438 * 5 4 2 37 37 H 1.08997 * 109.47190 * 299.99298 * 5 4 2 38 38 H 0.96696 * 114.00512 * 60.00048 * 8 6 5 39 39 H 1.08997 * 109.50313 * 54.46259 * 13 11 9 40 40 H 1.09004 * 109.49401 * 294.37026 * 13 11 9 41 41 H 1.09002 * 109.46464 * 58.65223 * 14 13 11 42 42 H 1.09000 * 109.46113 * 178.62243 * 14 13 11 43 43 H 1.09010 * 109.49399 * 181.31569 * 15 14 13 44 44 H 1.08991 * 109.49880 * 301.41297 * 15 14 13 45 45 H 1.08996 * 109.58800 * 65.15068 * 16 15 14 46 46 H 1.08995 * 109.58621 * 185.57826 * 16 15 14 47 47 H 1.08999 * 109.47490 * 300.00020 * 20 18 17 48 48 H 1.09004 * 109.47047 * 60.00184 * 20 18 17 49 49 H 0.96994 * 119.99506 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.47074 * 60.00602 * 30 2 1 51 51 H 1.08995 * 109.47486 * 300.00336 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4434 0.0002 7 1 5.1695 -1.4434 0.0007 8 8 3.6028 -2.7905 -0.0001 9 6 3.5695 -0.7221 1.2496 10 1 3.9332 0.3054 1.2498 11 6 4.0785 -1.4441 2.4988 12 1 3.6019 -1.0252 3.3850 13 6 3.7526 -2.9374 2.3975 14 6 4.3845 -3.6748 3.5803 15 6 5.9051 -3.5081 3.5340 16 6 6.2555 -2.0211 3.6482 17 7 5.5355 -1.2839 2.6009 18 6 6.1988 -0.4760 1.7502 19 8 5.6059 0.0652 0.8411 20 6 7.6773 -0.2452 1.9285 21 16 8.2726 0.8769 0.6389 22 6 9.9770 0.9687 1.0763 23 1 10.3464 0.4170 1.9281 24 6 10.8449 1.7501 0.3260 25 7 10.3944 2.4228 -0.7119 26 14 12.6517 1.8480 0.7901 27 1 13.4023 0.7776 0.0857 28 1 13.1928 3.1736 0.3960 29 1 12.7962 1.6706 2.2573 30 6 2.0400 -0.7212 1.2492 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.9333 -1.2359 -2.1387 37 1 3.9337 0.3058 -1.2488 38 1 3.8880 -3.3085 -0.7651 39 1 4.1532 -3.3349 1.4650 40 1 2.6716 -3.0761 2.4179 41 1 4.0020 -3.2602 4.5130 42 1 4.1336 -4.7340 3.5239 43 1 6.3563 -4.0529 4.3634 44 1 6.2855 -3.9001 2.5908 45 1 5.9564 -1.6494 4.6282 46 1 7.3292 -1.8875 3.5166 47 1 7.8606 0.1965 2.9079 48 1 8.2050 -1.1961 1.8542 49 1 11.0010 2.9686 -1.2364 50 1 1.6767 -1.7489 1.2492 51 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619579232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:00 Heat of formation + Delta-G solvation = -69.085685 kcal Electronic energy + Delta-G solvation = -30149.490667 eV Core-core repulsion = 26368.566837 eV Total energy + Delta-G solvation = -3780.923830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05613 -38.47141 -37.10412 -35.50624 -33.12774 -32.63469 -32.43342 -31.00070 -28.99837 -28.88281 -25.93547 -25.51589 -24.77102 -23.53327 -21.99323 -20.96630 -20.68591 -19.45575 -18.75629 -17.54723 -16.92611 -16.25034 -15.80623 -15.70309 -15.06820 -14.81604 -14.66055 -14.44917 -14.20890 -13.85570 -13.70880 -13.60455 -13.32854 -13.19699 -12.98206 -12.83027 -12.54994 -12.37289 -12.17712 -12.01983 -11.97156 -11.46943 -11.26594 -11.15873 -11.08218 -11.04422 -11.01846 -10.87469 -10.76542 -10.62151 -10.49920 -10.20064 -10.01062 -9.80508 -9.52160 -9.13926 -9.06859 -8.49341 -8.23876 -8.20875 -6.50384 -6.23195 -3.92996 2.97978 3.02835 3.21021 3.25970 3.29644 3.62126 4.19496 4.46514 4.65808 4.79305 4.85816 4.91186 4.96956 5.00334 5.07754 5.12317 5.21959 5.31482 5.36593 5.39379 5.43954 5.55099 5.58950 5.66516 5.68066 5.74905 5.77543 5.80183 5.82526 5.85316 5.88760 5.91893 5.97737 6.02429 6.10484 6.13353 6.14754 6.15419 6.22070 6.28731 6.40232 6.48501 6.53333 6.58130 6.66847 6.85516 7.06282 7.58387 7.67624 7.87350 8.33932 8.62467 9.22623 10.84146 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.003554 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.773255 B = 7875.928484 C = 9322.396093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.106 4.106 5 C -0.144 4.144 6 C 0.115 3.885 7 H 0.082 0.918 8 O -0.559 6.559 9 C -0.076 4.076 10 H 0.121 0.879 11 C 0.157 3.843 12 H 0.059 0.941 13 C -0.154 4.154 14 C -0.121 4.121 15 C -0.133 4.133 16 C 0.109 3.891 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.504 6.504 20 C -0.153 4.153 21 S -0.059 6.059 22 C -0.535 4.535 23 H 0.071 0.929 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.917 3.083 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 C -0.110 4.110 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.359 0.641 39 H 0.127 0.873 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.268 0.732 50 H 0.067 0.933 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 -11.608 5.894 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.182 4.182 6 C 0.058 3.942 7 H 0.099 0.901 8 O -0.366 6.366 9 C -0.094 4.094 10 H 0.138 0.862 11 C 0.054 3.946 12 H 0.077 0.923 13 C -0.191 4.191 14 C -0.159 4.159 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.346 5.346 18 C 0.317 3.683 19 O -0.381 6.381 20 C -0.304 4.304 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.089 0.911 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.743 3.257 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 C -0.148 4.148 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.206 0.794 39 H 0.144 0.856 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.322 -10.468 4.978 20.843 hybrid contribution 2.150 -0.705 1.027 2.485 sum -15.172 -11.173 6.005 19.776 Atomic orbital electron populations 1.21817 0.95843 1.01368 1.01162 1.21067 0.94677 0.99688 0.95319 0.91456 1.21482 0.95756 1.00360 0.96790 1.22116 0.95449 1.02659 0.97990 1.22307 0.98366 0.79813 0.93750 0.90065 1.86625 1.78936 1.24501 1.46495 1.21866 0.93709 1.02064 0.91783 0.86187 1.21228 0.79270 0.96319 0.97747 0.92265 1.22789 1.00838 0.94274 1.01160 1.21573 0.95049 1.00253 0.98976 1.21893 0.96909 0.95902 1.02411 1.21696 0.97553 0.91463 0.90776 1.48095 1.07355 1.45916 1.33206 1.20194 0.88851 0.78244 0.80988 1.90642 1.67395 1.48795 1.31302 1.23616 0.94552 1.05468 1.06728 1.85275 1.07348 1.56556 1.34081 1.22864 0.93716 1.34216 1.17526 0.91051 1.24975 0.99349 0.94619 0.94555 1.70011 1.35677 1.27978 1.16631 0.86195 0.82957 0.77687 0.78836 1.20287 1.20761 1.19702 1.21687 0.95747 1.00672 0.96729 0.93057 0.93075 0.92977 0.91958 0.92953 0.92666 0.90415 0.79409 0.85628 0.91838 0.92923 0.92346 0.91305 0.91433 0.91823 0.89475 0.89545 0.89614 0.92222 0.91481 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.09 -1.03 2.72 -90.62 -0.25 -1.28 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.25 5.06 -26.73 -0.14 -1.38 16 5 C -0.14 -1.97 5.59 -26.74 -0.15 -2.12 16 6 C 0.11 1.59 2.02 -26.73 -0.05 1.53 16 7 H 0.08 1.39 5.12 -51.84 -0.27 1.13 16 8 O -0.56 -6.45 7.66 -35.23 -0.27 -6.72 16 9 C -0.08 -1.05 1.39 -90.64 -0.13 -1.17 16 10 H 0.12 2.02 5.76 -52.69 -0.30 1.72 16 11 C 0.16 2.02 2.64 -67.60 -0.18 1.85 16 12 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 13 C -0.15 -1.74 4.04 -26.62 -0.11 -1.85 16 14 C -0.12 -1.19 5.88 -26.69 -0.16 -1.35 16 15 C -0.13 -1.32 6.08 -26.61 -0.16 -1.49 16 16 C 0.11 1.25 6.33 -3.71 -0.02 1.22 16 17 N -0.61 -8.56 2.94 -165.23 -0.49 -9.04 16 18 C 0.53 9.34 6.72 -10.99 -0.07 9.26 16 19 O -0.50 -9.85 9.04 5.56 0.05 -9.80 16 20 C -0.15 -3.01 4.54 36.00 0.16 -2.85 16 21 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 22 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 23 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 24 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 26 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 C -0.11 -1.31 4.15 -26.76 -0.11 -1.42 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.24 8.06 -51.93 -0.42 0.83 16 38 H 0.36 3.19 9.08 94.45 0.86 4.04 16 39 H 0.13 1.57 4.60 -6.29 -0.03 1.54 16 40 H 0.06 0.72 6.96 -51.93 -0.36 0.35 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.02 5.96 -51.93 -0.31 0.71 16 47 H 0.09 1.63 8.09 -51.92 -0.42 1.21 16 48 H 0.09 1.59 7.51 -51.91 -0.39 1.20 16 49 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.07 0.80 6.37 -51.93 -0.33 0.47 16 51 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -30.68 382.81 -9.67 -40.35 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.41 Total: 6.89 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.82 Total: -14.81 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.25 Total: -34.10 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.22 Total: -16.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.68 -9.67 -40.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619579232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.740 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds