Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46729 * 2 1 4 4 C 1.53001 * 109.47100 * 240.00286 * 2 1 3 5 5 C 1.52998 * 109.46898 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47315 * 60.00041 * 5 4 2 7 7 H 1.09002 * 109.47442 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47417 * 59.99873 * 6 5 4 9 9 C 1.53007 * 109.47018 * 299.99521 * 6 5 4 10 10 H 1.08996 * 109.47393 * 300.00630 * 9 6 5 11 11 C 1.52995 * 109.47309 * 179.97438 * 9 6 5 12 12 H 1.08998 * 109.70333 * 188.25562 * 11 9 6 13 13 C 1.53185 * 109.59201 * 308.62277 * 11 9 6 14 14 C 1.53035 * 109.31663 * 174.42122 * 13 11 9 15 15 C 1.53042 * 109.53531 * 298.62958 * 14 13 11 16 16 C 1.53194 * 109.31140 * 61.36888 * 15 14 13 17 17 N 1.46925 * 108.77334 * 305.36077 * 16 15 14 18 18 C 1.34777 * 120.63211 * 233.61062 * 17 16 15 19 19 O 1.21277 * 120.00115 * 175.63755 * 18 17 16 20 20 C 1.50696 * 119.99831 * 355.63839 * 18 17 16 21 21 S 1.81006 * 109.47076 * 179.97438 * 20 18 17 22 22 C 1.76195 * 99.99835 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00456 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99828 * 179.97438 * 22 21 20 25 25 N 1.31629 * 119.99719 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99874 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46697 * 90.00141 * 26 24 22 28 28 H 1.48499 * 109.46855 * 209.99860 * 26 24 22 29 29 H 1.48500 * 109.47267 * 330.00243 * 26 24 22 30 30 C 1.52995 * 109.46944 * 119.99789 * 2 1 3 31 31 H 1.08995 * 109.47303 * 299.99763 * 1 2 3 32 32 H 1.09000 * 109.46919 * 60.00575 * 1 2 3 33 33 H 1.09005 * 109.46744 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46774 * 299.99828 * 4 2 1 35 35 H 1.08998 * 109.47528 * 59.99421 * 4 2 1 36 36 H 1.09000 * 109.46805 * 179.97438 * 5 4 2 37 37 H 1.08997 * 109.47190 * 299.99298 * 5 4 2 38 38 H 0.96696 * 114.00512 * 60.00048 * 8 6 5 39 39 H 1.08997 * 109.50313 * 54.46259 * 13 11 9 40 40 H 1.09004 * 109.49401 * 294.37026 * 13 11 9 41 41 H 1.09002 * 109.46464 * 58.65223 * 14 13 11 42 42 H 1.09000 * 109.46113 * 178.62243 * 14 13 11 43 43 H 1.09010 * 109.49399 * 181.31569 * 15 14 13 44 44 H 1.08991 * 109.49880 * 301.41297 * 15 14 13 45 45 H 1.08996 * 109.58800 * 65.15068 * 16 15 14 46 46 H 1.08995 * 109.58621 * 185.57826 * 16 15 14 47 47 H 1.08999 * 109.47490 * 300.00020 * 20 18 17 48 48 H 1.09004 * 109.47047 * 60.00184 * 20 18 17 49 49 H 0.96994 * 119.99506 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.47074 * 60.00602 * 30 2 1 51 51 H 1.08995 * 109.47486 * 300.00336 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4434 0.0002 7 1 5.1695 -1.4434 0.0007 8 8 3.6028 -2.7905 -0.0001 9 6 3.5695 -0.7221 1.2496 10 1 3.9332 0.3054 1.2498 11 6 4.0785 -1.4441 2.4988 12 1 3.6019 -1.0252 3.3850 13 6 3.7526 -2.9374 2.3975 14 6 4.3845 -3.6748 3.5803 15 6 5.9051 -3.5081 3.5340 16 6 6.2555 -2.0211 3.6482 17 7 5.5355 -1.2839 2.6009 18 6 6.1988 -0.4760 1.7502 19 8 5.6059 0.0652 0.8411 20 6 7.6773 -0.2452 1.9285 21 16 8.2726 0.8769 0.6389 22 6 9.9770 0.9687 1.0763 23 1 10.3464 0.4170 1.9281 24 6 10.8449 1.7501 0.3260 25 7 10.3944 2.4228 -0.7119 26 14 12.6517 1.8480 0.7901 27 1 13.4023 0.7776 0.0857 28 1 13.1928 3.1736 0.3960 29 1 12.7962 1.6706 2.2573 30 6 2.0400 -0.7212 1.2492 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.9333 -1.2359 -2.1387 37 1 3.9337 0.3058 -1.2488 38 1 3.8880 -3.3085 -0.7651 39 1 4.1532 -3.3349 1.4650 40 1 2.6716 -3.0761 2.4179 41 1 4.0020 -3.2602 4.5130 42 1 4.1336 -4.7340 3.5239 43 1 6.3563 -4.0529 4.3634 44 1 6.2855 -3.9001 2.5908 45 1 5.9564 -1.6494 4.6282 46 1 7.3292 -1.8875 3.5166 47 1 7.8606 0.1965 2.9079 48 1 8.2050 -1.1961 1.8542 49 1 11.0010 2.9686 -1.2364 50 1 1.6767 -1.7489 1.2492 51 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619579232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = -86.813736 kcal Electronic energy + Delta-G solvation = -30150.259413 eV Core-core repulsion = 26368.566837 eV Total energy + Delta-G solvation = -3781.692576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.21712 -39.60343 -38.22687 -36.47175 -34.58761 -34.22550 -33.64901 -32.01157 -30.46042 -29.86269 -27.68385 -26.84746 -25.84000 -24.51171 -23.05133 -22.08485 -21.63488 -20.49758 -20.18742 -19.29941 -18.08107 -17.44712 -17.02076 -16.87866 -16.83750 -16.21568 -15.90298 -15.71002 -15.32695 -14.97438 -14.85089 -14.70427 -14.52827 -14.33147 -14.12684 -14.09301 -13.82759 -13.54923 -13.17330 -13.15510 -13.07503 -13.00178 -12.90477 -12.60400 -12.45329 -12.24917 -12.09788 -11.97147 -11.86367 -11.70163 -11.56797 -11.40142 -11.20600 -11.14077 -10.97035 -10.60022 -10.24377 -10.20765 -9.75906 -9.35856 -8.63593 -8.34991 -6.11204 1.27408 1.40839 1.46390 1.56777 1.64449 2.17573 2.28500 2.99144 3.27178 3.45356 3.63425 3.81501 3.89923 3.96189 4.02124 4.08719 4.13800 4.23227 4.28642 4.32616 4.39219 4.46497 4.49519 4.54879 4.57928 4.66968 4.73472 4.78695 4.83300 4.87807 4.91919 4.97207 5.01738 5.04854 5.13520 5.16943 5.21937 5.27051 5.31314 5.36802 5.39236 5.41325 5.46719 5.49060 5.53132 5.64566 5.85049 6.03181 6.19225 6.44125 6.96480 7.06781 7.29433 8.73867 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.003554 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.773255 B = 7875.928484 C = 9322.396093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.047 0.953 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.129 3.871 7 H 0.046 0.954 8 O -0.551 6.551 9 C -0.074 4.074 10 H 0.083 0.917 11 C 0.155 3.845 12 H 0.068 0.932 13 C -0.146 4.146 14 C -0.117 4.117 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.600 5.600 18 C 0.523 3.477 19 O -0.529 6.529 20 C -0.127 4.127 21 S -0.138 6.138 22 C -0.548 4.548 23 H 0.078 0.922 24 C 0.016 3.984 25 N -0.910 5.910 26 Si 0.994 3.006 27 H -0.268 1.268 28 H -0.278 1.278 29 H -0.260 1.260 30 C -0.101 4.101 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.372 0.628 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.271 0.729 50 H 0.075 0.925 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.918 -13.815 7.910 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.065 0.935 4 C -0.136 4.136 5 C -0.182 4.182 6 C 0.071 3.929 7 H 0.063 0.937 8 O -0.359 6.359 9 C -0.092 4.092 10 H 0.101 0.899 11 C 0.053 3.947 12 H 0.086 0.914 13 C -0.183 4.183 14 C -0.155 4.155 15 C -0.165 4.165 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.311 3.689 19 O -0.407 6.407 20 C -0.278 4.278 21 S 0.090 5.910 22 C -0.696 4.696 23 H 0.096 0.904 24 C -0.189 4.189 25 N -0.546 5.546 26 Si 0.816 3.184 27 H -0.193 1.193 28 H -0.203 1.203 29 H -0.183 1.183 30 C -0.139 4.139 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.221 0.779 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.042 -12.712 7.018 23.159 hybrid contribution 2.295 -0.075 0.424 2.335 sum -15.747 -12.787 7.442 21.606 Atomic orbital electron populations 1.21759 0.93863 1.02162 1.01799 1.21080 0.96296 0.98475 0.95160 0.93469 1.21425 0.93842 1.01078 0.97210 1.22078 0.97198 1.00605 0.98298 1.21875 0.96194 0.80922 0.93872 0.93650 1.86602 1.78580 1.23287 1.47439 1.21667 0.95132 1.00068 0.92360 0.89875 1.21377 0.78207 0.97679 0.97459 0.91392 1.22680 1.01280 0.92717 1.01599 1.21557 0.94554 1.00874 0.98492 1.21866 0.97314 0.94528 1.02813 1.21979 0.97173 0.92501 0.90629 1.48081 1.08010 1.44706 1.32601 1.19902 0.88031 0.79243 0.81696 1.90685 1.67470 1.50060 1.32530 1.23435 0.96258 1.03945 1.04178 1.85396 1.08086 1.59382 1.38172 1.23203 0.94204 1.34397 1.17787 0.90368 1.26064 1.04615 0.93948 0.94266 1.70170 1.37578 1.28914 1.17967 0.85013 0.76332 0.77912 0.79111 1.19295 1.20285 1.18349 1.21612 0.94004 1.01148 0.97142 0.92404 0.92565 0.92018 0.90815 0.92454 0.92362 0.93853 0.77879 0.86695 0.91168 0.91917 0.90974 0.88910 0.92606 0.89920 0.89881 0.88558 0.88453 0.92042 0.90679 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 2 C -0.09 -2.08 2.72 -10.79 -0.03 -2.11 16 3 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.10 -2.27 5.06 30.59 0.15 -2.11 16 5 C -0.14 -4.12 5.59 30.59 0.17 -3.95 16 6 C 0.13 3.67 2.02 30.59 0.06 3.73 16 7 H 0.05 1.65 5.12 -5.05 -0.03 1.63 16 8 O -0.55 -12.14 7.66 -148.98 -1.14 -13.28 16 9 C -0.07 -2.06 1.39 -10.81 -0.02 -2.07 16 10 H 0.08 2.98 5.76 -18.42 -0.11 2.88 16 11 C 0.16 3.81 2.64 44.97 0.12 3.93 16 12 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 13 C -0.15 -2.95 4.04 30.67 0.12 -2.83 16 14 C -0.12 -1.90 5.88 30.62 0.18 -1.72 16 15 C -0.13 -2.17 6.08 30.67 0.19 -1.98 16 16 C 0.10 2.08 6.33 86.36 0.55 2.63 16 17 N -0.60 -16.45 2.94 -795.05 -2.34 -18.79 16 18 C 0.52 19.03 6.72 87.66 0.59 19.62 16 19 O -0.53 -21.96 9.04 -3.02 -0.03 -21.99 16 20 C -0.13 -5.10 4.54 71.23 0.32 -4.77 16 21 S -0.14 -7.52 20.57 -56.49 -1.16 -8.69 16 22 C -0.55 -31.29 9.50 67.96 0.65 -30.64 16 23 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 24 C 0.02 0.91 5.49 84.86 0.47 1.37 16 25 N -0.91 -55.62 13.22 21.65 0.29 -55.34 16 26 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 29 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 30 C -0.10 -2.31 4.15 30.58 0.13 -2.18 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.07 1.56 7.68 -2.38 -0.02 1.54 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 38 H 0.37 6.18 9.08 6.32 0.06 6.24 16 39 H 0.12 2.65 4.60 26.51 0.12 2.77 16 40 H 0.07 1.36 6.96 -2.38 -0.02 1.34 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 1.81 5.96 -2.39 -0.01 1.79 16 47 H 0.10 3.64 8.09 -2.40 -0.02 3.62 16 48 H 0.10 3.64 7.51 -2.39 -0.02 3.62 16 49 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 50 H 0.07 1.62 6.37 -2.38 -0.02 1.60 16 51 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.44 382.81 2.96 -66.48 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 1.00 Total: 30.83 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.31 Total: -24.88 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -2.05 Total: -74.13 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.17 Total: -35.27 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.69 kcal Total: -69.44 2.96 -66.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619579232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.331 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds