Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.53003 * 109.47150 * 240.00857 * 2 1 3 5 5 C 1.53006 * 109.46778 * 299.99546 * 4 2 1 6 6 C 1.53005 * 109.47037 * 300.00109 * 5 4 2 7 7 H 1.09001 * 109.47235 * 300.00351 * 6 5 4 8 8 O 1.42900 * 109.46735 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46781 * 60.00350 * 6 5 4 10 10 H 1.09001 * 109.47235 * 60.00002 * 9 6 5 11 11 C 1.53005 * 109.46781 * 179.97438 * 9 6 5 12 12 H 1.09000 * 109.58292 * 292.60292 * 11 9 6 13 13 C 1.53188 * 109.58700 * 172.32389 * 11 9 6 14 14 C 1.53042 * 109.31392 * 185.57580 * 13 11 9 15 15 C 1.53034 * 109.53887 * 61.36372 * 14 13 11 16 16 C 1.53193 * 109.31320 * 298.63813 * 15 14 13 17 17 N 1.46925 * 109.58965 * 52.88640 * 11 9 6 18 18 C 1.34777 * 120.62800 * 353.39684 * 17 11 9 19 19 O 1.21280 * 120.00039 * 29.15976 * 18 17 11 20 20 C 1.50700 * 119.99765 * 209.15339 * 18 17 11 21 21 S 1.81008 * 109.46868 * 180.02562 * 20 18 17 22 22 C 1.76202 * 99.99576 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00665 * 0.02562 * 22 21 20 24 24 C 1.38797 * 119.99454 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00626 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99828 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47118 * 60.00209 * 26 24 22 28 28 H 1.48505 * 109.47145 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46810 * 299.99939 * 26 24 22 30 30 C 1.52995 * 109.47098 * 120.00390 * 2 1 3 31 31 H 1.08994 * 109.46952 * 299.99700 * 1 2 3 32 32 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47099 * 59.99795 * 1 2 3 34 34 H 1.08993 * 109.47491 * 59.99475 * 4 2 1 35 35 H 1.08998 * 109.46945 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46723 * 180.02562 * 5 4 2 37 37 H 1.08995 * 109.46790 * 60.00033 * 5 4 2 38 38 H 0.96694 * 113.99991 * 60.00549 * 8 6 5 39 39 H 1.09002 * 109.49686 * 305.52369 * 13 11 9 40 40 H 1.09004 * 109.50082 * 65.58680 * 13 11 9 41 41 H 1.08999 * 109.45811 * 181.38390 * 14 13 11 42 42 H 1.09001 * 109.45653 * 301.33929 * 14 13 11 43 43 H 1.09003 * 109.49800 * 58.58406 * 15 14 13 44 44 H 1.08993 * 109.50308 * 178.68647 * 15 14 13 45 45 H 1.08993 * 109.59043 * 174.42566 * 16 15 14 46 46 H 1.09010 * 109.58470 * 294.70387 * 16 15 14 47 47 H 1.08995 * 109.47328 * 300.00317 * 20 18 17 48 48 H 1.08997 * 109.46884 * 60.00663 * 20 18 17 49 49 H 0.96993 * 120.00592 * 179.97438 * 25 24 22 50 50 H 1.09010 * 109.46916 * 180.02562 * 30 2 1 51 51 H 1.08994 * 109.47145 * 299.99791 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5301 -2.1637 -1.2495 6 6 2.0402 -2.8850 -0.0002 7 1 3.1302 -2.8849 -0.0002 8 8 1.5643 -4.2324 -0.0007 9 6 1.5301 -2.1638 1.2490 10 1 0.4401 -2.1639 1.2490 11 6 2.0396 -2.8855 2.4983 12 1 1.5731 -3.8681 2.5684 13 6 1.6939 -2.0629 3.7435 14 6 2.3257 -2.7177 4.9741 15 6 3.8478 -2.7401 4.8173 16 6 4.2179 -3.5703 3.5842 17 7 3.4988 -3.0376 2.4185 18 6 4.1651 -2.6917 1.2992 19 8 3.7341 -1.8118 0.5844 20 6 5.4456 -3.3983 0.9358 21 16 6.0956 -2.7130 -0.6082 22 6 7.5487 -3.6929 -0.7900 23 1 7.7888 -4.4447 -0.0529 24 6 8.3842 -3.4992 -1.8813 25 7 8.0915 -2.5831 -2.7801 26 14 9.9244 -4.5385 -2.0744 27 1 9.5465 -5.9719 -2.1620 28 1 10.6397 -4.1381 -3.3128 29 1 10.8117 -4.3311 -0.9018 30 6 2.0400 -0.7213 1.2491 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 1.6767 -0.2072 -2.1393 35 1 3.1300 -0.7215 -1.2491 36 1 1.8938 -2.6775 -2.1393 37 1 0.4401 -2.1636 -1.2494 38 1 1.8501 -4.7502 -0.7657 39 1 2.0823 -1.0508 3.6302 40 1 0.6114 -2.0256 3.8659 41 1 2.0607 -2.1480 5.8648 42 1 1.9556 -3.7382 5.0726 43 1 4.2159 -1.7215 4.6938 44 1 4.2984 -3.1853 5.7042 45 1 5.2922 -3.5081 3.4107 46 1 3.9334 -4.6103 3.7450 47 1 6.1768 -3.2573 1.7317 48 1 5.2493 -4.4627 0.8071 49 1 8.6756 -2.4475 -3.5425 50 1 3.1301 -0.7209 1.2493 51 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619579233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = 14.883871 kcal Electronic energy + Delta-G solvation = -30955.490280 eV Core-core repulsion = 27178.207644 eV Total energy + Delta-G solvation = -3777.282637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.181 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07240 -37.98960 -37.53802 -35.47596 -33.10709 -32.74853 -32.46416 -30.16691 -29.19346 -28.40673 -26.30441 -25.54867 -24.95798 -23.67074 -22.03107 -21.21923 -20.66839 -19.27322 -18.22530 -17.62040 -17.32246 -16.95386 -15.85912 -15.43365 -15.27528 -14.83731 -14.45197 -14.31854 -14.19484 -13.95191 -13.84738 -13.46838 -13.39923 -13.11112 -12.89058 -12.71643 -12.44814 -12.36907 -12.26482 -12.06659 -11.61923 -11.40256 -11.14387 -11.09452 -11.07348 -11.04739 -10.83141 -10.79967 -10.58854 -10.53642 -10.42895 -10.08996 -9.88374 -9.73321 -9.28932 -9.10369 -8.80319 -8.32719 -8.22059 -7.58218 -6.55124 -6.26016 -3.96737 2.58939 2.94483 3.20927 3.24656 3.27071 3.58224 4.16661 4.61629 4.71238 4.71800 4.76719 4.96117 5.01137 5.09101 5.09965 5.26128 5.29688 5.33005 5.41753 5.47341 5.56255 5.59068 5.62021 5.67825 5.73776 5.77558 5.83103 5.85091 5.90408 5.95238 5.95990 5.98504 6.10149 6.11759 6.13495 6.16634 6.21451 6.27583 6.33155 6.43419 6.63070 6.69096 6.75473 6.79826 6.94990 7.04577 7.21169 7.55974 7.62673 8.16626 8.31292 8.46849 9.20130 10.81201 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.004338 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.985091 B = 6453.123356 C = 7876.111264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 H 0.059 0.941 4 C -0.104 4.104 5 C -0.136 4.136 6 C 0.013 3.987 7 H 0.168 0.832 8 O -0.589 6.589 9 C -0.061 4.061 10 H 0.066 0.934 11 C 0.161 3.839 12 H 0.074 0.926 13 C -0.136 4.136 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.116 3.884 17 N -0.612 5.612 18 C 0.502 3.498 19 O -0.431 6.431 20 C -0.159 4.159 21 S -0.062 6.062 22 C -0.534 4.534 23 H 0.072 0.928 24 C 0.076 3.924 25 N -0.867 5.867 26 Si 0.916 3.084 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 C -0.148 4.148 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.370 0.630 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.269 0.731 50 H 0.154 0.846 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 0.453 12.661 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 H 0.078 0.922 4 C -0.142 4.142 5 C -0.173 4.173 6 C -0.042 4.042 7 H 0.182 0.818 8 O -0.395 6.395 9 C -0.079 4.079 10 H 0.084 0.916 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.175 4.175 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.008 4.008 17 N -0.347 5.347 18 C 0.297 3.703 19 O -0.312 6.312 20 C -0.309 4.309 21 S 0.164 5.836 22 C -0.682 4.682 23 H 0.090 0.910 24 C -0.134 4.134 25 N -0.503 5.503 26 Si 0.742 3.258 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 C -0.183 4.183 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.216 0.784 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.169 0.831 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.420 2.015 12.024 18.131 hybrid contribution 1.278 -1.921 0.129 2.311 sum -12.142 0.094 12.153 17.179 Atomic orbital electron populations 1.21990 0.96985 1.01419 1.00334 1.20964 0.94107 0.98731 0.96287 0.92211 1.21414 1.02648 0.94176 0.95916 1.22058 0.99514 0.97125 0.98634 1.25400 1.05956 0.79712 0.93087 0.81813 1.86338 1.78913 1.25112 1.49118 1.21090 0.99049 0.95509 0.92282 0.91585 1.21186 0.79522 0.98588 0.94871 0.90841 1.22120 1.00464 1.00515 0.94373 1.21499 0.95291 1.00942 0.97827 1.21907 0.96500 1.01193 0.97597 1.21619 0.97178 0.97133 0.84831 1.47675 1.06826 1.66564 1.13677 1.19894 0.85610 0.82958 0.81838 1.90362 1.66618 1.23690 1.50553 1.23763 0.97252 1.03575 1.06307 1.85148 1.28095 1.49988 1.20339 1.22786 1.09517 1.23543 1.12399 0.91028 1.24959 0.98118 0.95515 0.94773 1.69989 1.37608 1.31236 1.11419 0.86262 0.81599 0.80152 0.77741 1.19939 1.20826 1.19942 1.23424 1.07849 0.91855 0.95141 0.93697 0.92502 0.93671 0.93678 0.89644 0.92716 0.93384 0.78422 0.90591 0.91469 0.92030 0.92033 0.91341 0.90911 0.89686 0.91807 0.89515 0.89165 0.92136 0.83140 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.50 37.16 0.32 -1.59 16 2 C -0.08 -1.18 3.19 -90.62 -0.29 -1.47 16 3 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.10 -1.66 5.18 -26.73 -0.14 -1.79 16 5 C -0.14 -2.15 5.27 -26.73 -0.14 -2.29 16 6 C 0.01 0.21 2.21 -26.73 -0.06 0.15 16 7 H 0.17 2.98 2.71 -1.62 0.00 2.97 16 8 O -0.59 -9.34 12.79 -35.23 -0.45 -9.79 16 9 C -0.06 -0.87 1.56 -90.62 -0.14 -1.01 16 10 H 0.07 0.97 6.43 -51.93 -0.33 0.63 16 11 C 0.16 2.08 2.52 -67.60 -0.17 1.91 16 12 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 13 C -0.14 -1.44 4.99 -26.61 -0.13 -1.58 16 14 C -0.12 -1.05 5.88 -26.69 -0.16 -1.21 16 15 C -0.13 -1.21 6.08 -26.61 -0.16 -1.38 16 16 C 0.12 1.25 6.18 -3.69 -0.02 1.23 16 17 N -0.61 -8.18 2.95 -183.17 -0.54 -8.72 16 18 C 0.50 8.22 5.03 -10.99 -0.06 8.16 16 19 O -0.43 -7.55 4.84 5.56 0.03 -7.52 16 20 C -0.16 -2.94 5.37 36.01 0.19 -2.75 16 21 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 22 C -0.53 -14.49 9.50 30.94 0.29 -14.19 16 23 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 24 C 0.08 2.08 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.12 13.22 55.49 0.73 -24.38 16 26 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 C -0.15 -2.12 3.76 -26.74 -0.10 -2.22 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.59 6.75 -51.93 -0.35 1.24 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.74 6.43 -51.93 -0.33 0.40 16 38 H 0.37 5.01 9.08 45.56 0.41 5.43 16 39 H 0.08 0.87 6.01 -51.93 -0.31 0.55 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.92 6.26 -51.93 -0.33 0.60 16 46 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 47 H 0.09 1.52 6.86 -51.92 -0.36 1.16 16 48 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 49 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.15 2.52 4.16 28.68 0.12 2.64 16 51 H 0.04 0.47 6.21 -51.93 -0.32 0.15 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -29.44 373.39 -9.78 -39.22 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.08 Total: 11.56 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.86 Total: -18.04 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.19 Total: -33.10 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.42 Total: -17.31 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.44 -9.78 -39.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619579233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.108 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds