Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.53003 * 109.47150 * 240.00857 * 2 1 3 5 5 C 1.53006 * 109.46778 * 299.99546 * 4 2 1 6 6 C 1.53005 * 109.47037 * 300.00109 * 5 4 2 7 7 H 1.09001 * 109.47235 * 300.00351 * 6 5 4 8 8 O 1.42900 * 109.46735 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46781 * 60.00350 * 6 5 4 10 10 H 1.09001 * 109.47235 * 60.00002 * 9 6 5 11 11 C 1.53005 * 109.46781 * 179.97438 * 9 6 5 12 12 H 1.09000 * 109.58292 * 292.60292 * 11 9 6 13 13 C 1.53188 * 109.58700 * 172.32389 * 11 9 6 14 14 C 1.53042 * 109.31392 * 185.57580 * 13 11 9 15 15 C 1.53034 * 109.53887 * 61.36372 * 14 13 11 16 16 C 1.53193 * 109.31320 * 298.63813 * 15 14 13 17 17 N 1.46925 * 109.58965 * 52.88640 * 11 9 6 18 18 C 1.34777 * 120.62800 * 353.39684 * 17 11 9 19 19 O 1.21280 * 120.00039 * 29.15976 * 18 17 11 20 20 C 1.50700 * 119.99765 * 209.15339 * 18 17 11 21 21 S 1.81008 * 109.46868 * 180.02562 * 20 18 17 22 22 C 1.76202 * 99.99576 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00665 * 0.02562 * 22 21 20 24 24 C 1.38797 * 119.99454 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00626 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99828 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47118 * 60.00209 * 26 24 22 28 28 H 1.48505 * 109.47145 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46810 * 299.99939 * 26 24 22 30 30 C 1.52995 * 109.47098 * 120.00390 * 2 1 3 31 31 H 1.08994 * 109.46952 * 299.99700 * 1 2 3 32 32 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47099 * 59.99795 * 1 2 3 34 34 H 1.08993 * 109.47491 * 59.99475 * 4 2 1 35 35 H 1.08998 * 109.46945 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46723 * 180.02562 * 5 4 2 37 37 H 1.08995 * 109.46790 * 60.00033 * 5 4 2 38 38 H 0.96694 * 113.99991 * 60.00549 * 8 6 5 39 39 H 1.09002 * 109.49686 * 305.52369 * 13 11 9 40 40 H 1.09004 * 109.50082 * 65.58680 * 13 11 9 41 41 H 1.08999 * 109.45811 * 181.38390 * 14 13 11 42 42 H 1.09001 * 109.45653 * 301.33929 * 14 13 11 43 43 H 1.09003 * 109.49800 * 58.58406 * 15 14 13 44 44 H 1.08993 * 109.50308 * 178.68647 * 15 14 13 45 45 H 1.08993 * 109.59043 * 174.42566 * 16 15 14 46 46 H 1.09010 * 109.58470 * 294.70387 * 16 15 14 47 47 H 1.08995 * 109.47328 * 300.00317 * 20 18 17 48 48 H 1.08997 * 109.46884 * 60.00663 * 20 18 17 49 49 H 0.96993 * 120.00592 * 179.97438 * 25 24 22 50 50 H 1.09010 * 109.46916 * 180.02562 * 30 2 1 51 51 H 1.08994 * 109.47145 * 299.99791 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5301 -2.1637 -1.2495 6 6 2.0402 -2.8850 -0.0002 7 1 3.1302 -2.8849 -0.0002 8 8 1.5643 -4.2324 -0.0007 9 6 1.5301 -2.1638 1.2490 10 1 0.4401 -2.1639 1.2490 11 6 2.0396 -2.8855 2.4983 12 1 1.5731 -3.8681 2.5684 13 6 1.6939 -2.0629 3.7435 14 6 2.3257 -2.7177 4.9741 15 6 3.8478 -2.7401 4.8173 16 6 4.2179 -3.5703 3.5842 17 7 3.4988 -3.0376 2.4185 18 6 4.1651 -2.6917 1.2992 19 8 3.7341 -1.8118 0.5844 20 6 5.4456 -3.3983 0.9358 21 16 6.0956 -2.7130 -0.6082 22 6 7.5487 -3.6929 -0.7900 23 1 7.7888 -4.4447 -0.0529 24 6 8.3842 -3.4992 -1.8813 25 7 8.0915 -2.5831 -2.7801 26 14 9.9244 -4.5385 -2.0744 27 1 9.5465 -5.9719 -2.1620 28 1 10.6397 -4.1381 -3.3128 29 1 10.8117 -4.3311 -0.9018 30 6 2.0400 -0.7213 1.2491 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 1.6767 -0.2072 -2.1393 35 1 3.1300 -0.7215 -1.2491 36 1 1.8938 -2.6775 -2.1393 37 1 0.4401 -2.1636 -1.2494 38 1 1.8501 -4.7502 -0.7657 39 1 2.0823 -1.0508 3.6302 40 1 0.6114 -2.0256 3.8659 41 1 2.0607 -2.1480 5.8648 42 1 1.9556 -3.7382 5.0726 43 1 4.2159 -1.7215 4.6938 44 1 4.2984 -3.1853 5.7042 45 1 5.2922 -3.5081 3.4107 46 1 3.9334 -4.6103 3.7450 47 1 6.1768 -3.2573 1.7317 48 1 5.2493 -4.4627 0.8071 49 1 8.6756 -2.4475 -3.5425 50 1 3.1301 -0.7209 1.2493 51 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619579233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = -2.953246 kcal Electronic energy + Delta-G solvation = -30956.263756 eV Core-core repulsion = 27178.207644 eV Total energy + Delta-G solvation = -3778.056112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.27423 -39.08750 -38.64943 -36.71571 -34.55543 -34.19769 -33.69903 -31.39033 -30.48050 -29.54849 -27.63671 -27.41283 -25.98193 -24.71124 -23.17032 -22.41519 -21.63042 -20.50577 -19.72227 -19.19970 -18.49848 -18.18551 -17.10044 -16.84730 -16.59224 -16.42954 -15.87920 -15.32627 -15.25790 -15.22125 -15.02841 -14.70345 -14.59916 -14.35188 -14.12921 -14.04233 -13.74722 -13.56778 -13.38035 -13.15706 -13.06566 -12.88739 -12.66939 -12.60755 -12.53247 -12.04319 -11.97041 -11.82422 -11.78427 -11.69449 -11.47809 -11.44695 -11.27440 -11.10663 -10.91796 -10.47239 -10.22950 -9.96022 -9.46663 -8.78480 -8.57525 -8.32303 -6.06680 1.28393 1.34128 1.43237 1.48025 1.58358 2.20939 2.31397 3.02165 3.31246 3.49873 3.69054 3.75543 3.84842 3.94608 4.07279 4.15589 4.17460 4.28688 4.31103 4.37485 4.44353 4.47874 4.49930 4.56730 4.59773 4.69069 4.72306 4.76431 4.84738 4.90844 4.97943 5.00630 5.06425 5.11106 5.11822 5.14168 5.16588 5.25526 5.28316 5.38488 5.44685 5.48015 5.52445 5.54463 5.61437 5.73037 5.85600 6.01860 6.21926 6.47729 6.96472 7.10396 7.23161 8.75717 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.004338 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.985091 B = 6453.123356 C = 7876.111264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.059 0.941 4 C -0.101 4.101 5 C -0.132 4.132 6 C 0.012 3.988 7 H 0.151 0.849 8 O -0.595 6.595 9 C -0.056 4.056 10 H 0.067 0.933 11 C 0.162 3.838 12 H 0.070 0.930 13 C -0.131 4.131 14 C -0.114 4.114 15 C -0.128 4.128 16 C 0.107 3.893 17 N -0.603 5.603 18 C 0.498 3.502 19 O -0.444 6.444 20 C -0.134 4.134 21 S -0.124 6.124 22 C -0.549 4.549 23 H 0.076 0.924 24 C 0.020 3.980 25 N -0.908 5.908 26 Si 0.988 3.012 27 H -0.265 1.265 28 H -0.280 1.280 29 H -0.264 1.264 30 C -0.139 4.139 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.377 0.623 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.270 0.730 50 H 0.132 0.868 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 -0.322 15.139 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.170 4.170 6 C -0.043 4.043 7 H 0.165 0.835 8 O -0.401 6.401 9 C -0.075 4.075 10 H 0.086 0.914 11 C 0.060 3.940 12 H 0.088 0.912 13 C -0.169 4.169 14 C -0.152 4.152 15 C -0.166 4.166 16 C -0.015 4.015 17 N -0.338 5.338 18 C 0.292 3.708 19 O -0.326 6.326 20 C -0.286 4.286 21 S 0.103 5.897 22 C -0.697 4.697 23 H 0.094 0.906 24 C -0.185 4.185 25 N -0.544 5.544 26 Si 0.810 3.190 27 H -0.190 1.190 28 H -0.205 1.205 29 H -0.188 1.188 30 C -0.174 4.174 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.224 0.776 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.079 0.921 50 H 0.147 0.853 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.214 1.228 14.532 20.365 hybrid contribution 1.454 -1.691 -0.605 2.311 sum -12.760 -0.462 13.927 18.894 Atomic orbital electron populations 1.21902 0.95208 1.01378 1.01437 1.20967 0.95524 0.98341 0.95321 0.92279 1.21342 1.00521 0.94711 0.97265 1.22020 0.99803 0.96925 0.98258 1.25318 1.05029 0.79939 0.94006 0.83546 1.86310 1.78936 1.25172 1.49732 1.21033 0.98954 0.95300 0.92165 0.91435 1.21218 0.78749 0.98645 0.95397 0.91242 1.22076 1.01407 0.99628 0.93816 1.21494 0.94734 1.01481 0.97459 1.21883 0.96961 1.00418 0.97333 1.21888 0.96862 0.98241 0.84556 1.47665 1.07159 1.65815 1.13152 1.19537 0.85162 0.83139 0.82953 1.90445 1.66718 1.24168 1.51283 1.23585 0.98701 1.03390 1.02892 1.85206 1.28261 1.51163 1.25080 1.23163 1.10208 1.23655 1.12626 0.90570 1.25956 1.01532 0.96694 0.94337 1.70140 1.39049 1.33115 1.12124 0.85154 0.77366 0.78493 0.77952 1.18981 1.20485 1.18836 1.23229 1.06338 0.92190 0.95673 0.92121 0.93016 0.93084 0.93297 0.92971 0.94115 0.92581 0.77589 0.91366 0.90203 0.90333 0.91273 0.92282 0.88595 0.89994 0.90452 0.88424 0.88915 0.92111 0.85264 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.50 71.98 0.61 -2.76 16 2 C -0.08 -2.34 3.19 -10.79 -0.03 -2.38 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.10 -3.31 5.18 30.60 0.16 -3.15 16 5 C -0.13 -4.29 5.27 30.60 0.16 -4.13 16 6 C 0.01 0.39 2.21 30.60 0.07 0.46 16 7 H 0.15 5.48 2.71 -16.68 -0.05 5.44 16 8 O -0.59 -18.70 12.79 -148.98 -1.91 -20.60 16 9 C -0.06 -1.54 1.56 -10.79 -0.02 -1.56 16 10 H 0.07 1.86 6.43 -2.39 -0.02 1.84 16 11 C 0.16 3.90 2.52 44.98 0.11 4.01 16 12 H 0.07 1.77 7.91 -2.39 -0.02 1.75 16 13 C -0.13 -2.41 4.99 30.67 0.15 -2.25 16 14 C -0.11 -1.63 5.88 30.62 0.18 -1.45 16 15 C -0.13 -1.94 6.08 30.67 0.19 -1.76 16 16 C 0.11 2.08 6.18 86.36 0.53 2.62 16 17 N -0.60 -15.43 2.95 -851.81 -2.51 -17.94 16 18 C 0.50 16.42 5.03 87.66 0.44 16.86 16 19 O -0.44 -16.02 4.84 -3.03 -0.01 -16.03 16 20 C -0.13 -5.05 5.37 71.24 0.38 -4.67 16 21 S -0.12 -6.35 20.57 -56.49 -1.16 -7.52 16 22 C -0.55 -30.27 9.50 67.95 0.65 -29.62 16 23 H 0.08 3.97 7.80 -2.91 -0.02 3.95 16 24 C 0.02 1.11 5.49 84.86 0.47 1.58 16 25 N -0.91 -54.02 13.22 21.65 0.29 -53.73 16 26 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 29 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 30 C -0.14 -3.90 3.76 30.59 0.12 -3.78 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.28 4.81 -2.39 -0.01 1.27 16 33 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 2.06 6.75 -2.39 -0.02 2.05 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.71 6.43 -2.39 -0.02 1.69 16 38 H 0.38 10.34 9.08 -74.06 -0.67 9.67 16 39 H 0.07 1.38 6.01 -2.39 -0.01 1.37 16 40 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.65 6.26 -2.39 -0.01 1.64 16 46 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.10 3.41 6.86 -2.40 -0.02 3.39 16 48 H 0.09 3.41 8.14 -2.40 -0.02 3.39 16 49 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 50 H 0.13 4.39 4.16 20.22 0.08 4.47 16 51 H 0.05 1.26 6.21 -2.39 -0.01 1.25 16 Total: -1.00 -65.03 373.39 1.21 -63.82 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: 0.32 Total: 39.13 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.17 Total: -31.98 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -2.22 Total: -71.67 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.92 Total: -36.63 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -1.16 Total: -7.52 kcal Total: -65.03 1.21 -63.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619579233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.867 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds