Wall clock time and date at job start Sat Apr 11 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48500 * 109.46956 * 270.00208 * 3 2 1 5 5 H 1.48502 * 109.46887 * 30.00223 * 3 2 1 6 6 H 1.48500 * 109.46974 * 150.00680 * 3 2 1 7 7 C 1.37873 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00465 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47658 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00116 * 270.00501 * 10 9 7 12 12 C 1.53008 * 109.46802 * 269.99448 * 11 10 9 13 13 C 1.52994 * 117.49842 * 243.62009 * 12 11 10 14 14 C 1.52997 * 117.49565 * 174.99596 * 12 11 10 15 15 C 1.34777 * 120.00004 * 89.99748 * 10 9 7 16 16 S 1.71198 * 120.00059 * 0.02562 * 15 10 9 17 17 N 1.34786 * 119.99934 * 180.27556 * 15 10 9 18 18 C 1.46497 * 119.99732 * 179.72747 * 17 15 10 19 19 C 1.53005 * 109.46704 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46696 * 180.02562 * 19 18 17 21 21 N 1.46906 * 109.46668 * 180.02562 * 20 19 18 22 22 C 1.47008 * 110.99595 * 293.63045 * 21 20 19 23 23 C 1.53099 * 109.25777 * 177.61240 * 22 21 20 24 24 O 1.43011 * 109.26033 * 56.84610 * 23 22 21 25 25 C 1.43021 * 113.74120 * 301.33578 * 24 23 22 26 26 C 1.47019 * 110.99530 * 170.00083 * 21 20 19 27 27 H 0.96996 * 119.99853 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46990 * 60.00085 * 9 7 2 29 29 H 1.08996 * 109.47192 * 300.00461 * 9 7 2 30 30 H 1.08997 * 109.47351 * 29.99452 * 11 10 9 31 31 H 1.08996 * 109.47200 * 150.00044 * 11 10 9 32 32 H 1.09001 * 115.54827 * 29.33361 * 12 11 10 33 33 H 1.09001 * 117.50051 * 359.97438 * 13 12 11 34 34 H 1.09004 * 117.49539 * 145.02349 * 13 12 11 35 35 H 1.09004 * 117.49843 * 214.97984 * 14 12 11 36 36 H 1.09000 * 117.49930 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99685 * 359.73172 * 17 15 10 38 38 H 1.09003 * 109.47268 * 299.99680 * 18 17 15 39 39 H 1.09001 * 109.47150 * 60.00346 * 18 17 15 40 40 H 1.08995 * 109.47418 * 299.99716 * 19 18 17 41 41 H 1.09001 * 109.47199 * 60.00174 * 19 18 17 42 42 H 1.09003 * 109.47221 * 299.99445 * 20 19 18 43 43 H 1.08993 * 109.47355 * 59.99833 * 20 19 18 44 44 H 1.09003 * 109.51469 * 297.54284 * 22 21 20 45 45 H 1.08999 * 109.51097 * 57.67822 * 22 21 20 46 46 H 1.09006 * 109.50378 * 296.91422 * 23 22 21 47 47 H 1.08999 * 109.54947 * 176.81035 * 23 22 21 48 48 H 1.08995 * 109.50209 * 298.73467 * 25 24 23 49 49 H 1.09000 * 109.53837 * 178.62585 * 25 24 23 50 50 H 1.08994 * 109.50622 * 302.31994 * 26 21 20 51 51 H 1.08997 * 109.50676 * 62.41377 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7483 -5.3007 -1.7110 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9366 -3.0779 15 6 2.6409 -4.1248 1.1667 16 16 2.0842 -3.4746 2.6493 17 7 3.5210 -5.1457 1.1667 18 6 4.0016 -5.6984 2.4354 19 6 4.9838 -6.8378 2.1557 20 6 5.4852 -7.4155 3.4808 21 7 6.4287 -8.5090 3.2123 22 6 5.7489 -9.6472 2.5771 23 6 6.7768 -10.7371 2.2614 24 8 7.4512 -11.1125 3.4653 25 6 8.1247 -10.0280 4.1102 26 6 7.1104 -8.9311 4.4446 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.6868 -3.3878 -2.0289 31 1 3.6885 -4.5594 -1.1389 32 1 0.7114 -5.2096 -1.3876 33 1 3.3930 -6.8291 -1.5432 34 1 1.6928 -7.5444 -1.5338 35 1 1.1431 -6.2644 -3.6537 36 1 2.8433 -5.5493 -3.6624 37 1 3.8362 -5.5143 0.3266 38 1 4.5048 -4.9170 3.0048 39 1 3.1566 -6.0793 3.0091 40 1 4.4811 -7.6194 1.5862 41 1 5.8287 -6.4566 1.5823 42 1 5.9879 -6.6341 4.0508 43 1 4.6401 -7.7968 4.0539 44 1 4.9936 -10.0448 3.2550 45 1 5.2727 -9.3176 1.6537 46 1 7.5016 -10.3563 1.5418 47 1 6.2698 -11.6061 1.8420 48 1 8.8886 -9.6267 3.4444 49 1 8.5923 -10.3837 5.0283 50 1 7.6280 -8.0787 4.8844 51 1 6.3768 -9.3164 5.1527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728790385.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:12 Heat of formation + Delta-G solvation = 5.759928 kcal Electronic energy + Delta-G solvation = -27765.351129 eV Core-core repulsion = 24019.965600 eV Total energy + Delta-G solvation = -3745.385529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.98440 -39.27909 -37.28128 -36.51954 -35.23964 -32.75639 -31.85510 -31.45944 -28.29331 -28.12533 -26.59924 -24.54189 -24.32045 -22.84548 -22.62888 -22.09004 -21.37447 -20.74240 -20.01769 -17.71892 -17.19005 -16.61614 -16.56572 -16.29335 -15.96593 -15.46337 -15.40523 -15.20342 -14.86299 -14.76375 -14.58143 -14.28141 -13.85810 -13.70482 -13.42952 -12.89894 -12.57153 -12.54150 -12.33629 -11.91106 -11.86236 -11.74435 -11.70400 -11.65566 -11.32545 -11.24987 -11.03491 -10.86921 -10.70201 -10.67306 -10.53758 -10.22104 -10.08489 -10.07153 -10.00582 -9.59933 -8.81028 -8.41823 -8.17527 -6.91037 -6.37586 -6.02000 -4.05197 2.24611 2.73126 3.21634 3.32448 3.40520 3.43211 3.46175 3.54819 3.60548 3.93020 4.44064 4.47653 4.52706 4.56282 4.63052 4.74353 4.75620 4.76325 4.84503 4.89587 4.92910 5.01303 5.10574 5.10969 5.21492 5.30008 5.34182 5.38077 5.41103 5.45771 5.47019 5.52411 5.55967 5.63887 5.73266 5.74967 5.95960 5.96172 5.98982 6.17787 6.47585 6.52796 6.55251 6.72649 6.73611 7.21940 7.52965 7.61172 7.93714 8.03698 8.19211 8.93147 9.57219 11.06646 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002439 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.139456 B =11475.668892 C =12770.514477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.239 3.761 10 N -0.540 5.540 11 C 0.126 3.874 12 C -0.168 4.168 13 C -0.183 4.183 14 C -0.170 4.170 15 C 0.565 3.435 16 S -0.660 6.660 17 N -0.704 5.704 18 C 0.132 3.868 19 C -0.128 4.128 20 C 0.060 3.940 21 N -0.537 5.537 22 C 0.013 3.987 23 C 0.063 3.937 24 O -0.387 6.387 25 C 0.064 3.936 26 C 0.017 3.983 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.388 0.612 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.060 0.940 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.447 -22.266 -0.707 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.120 3.880 10 N -0.245 5.245 11 C -0.001 4.001 12 C -0.188 4.188 13 C -0.220 4.220 14 C -0.208 4.208 15 C 0.206 3.794 16 S -0.531 6.531 17 N -0.339 5.339 18 C 0.007 3.993 19 C -0.167 4.167 20 C -0.068 4.068 21 N -0.262 5.262 22 C -0.115 4.115 23 C -0.014 4.014 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.111 4.111 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.225 0.775 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.078 0.922 49 H 0.116 0.884 50 H 0.106 0.894 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.261 -21.697 -0.008 25.428 hybrid contribution 0.215 0.496 -0.792 0.959 sum 13.476 -21.201 -0.800 25.134 Atomic orbital electron populations 1.69919 1.05911 1.27012 1.50116 1.24821 0.94830 0.98974 0.94948 0.86490 0.79997 0.83183 0.77715 1.20903 1.21030 1.19861 1.21125 0.93001 0.89995 1.51444 0.92684 1.19921 0.87063 0.80702 1.00297 1.47753 1.42629 1.32720 1.01354 1.21306 0.95107 0.95907 0.87762 1.22860 1.01503 0.93432 1.00959 1.23037 1.01159 0.95205 1.02636 1.22920 1.03565 1.03745 0.90532 1.22105 0.82519 0.82520 0.92272 1.93140 1.72693 1.72908 1.14376 1.44923 1.44759 1.34391 1.09803 1.21401 0.97552 0.95427 0.84881 1.21799 0.99148 0.97653 0.98083 1.21987 0.94467 0.93585 0.96733 1.62201 1.30288 1.08380 1.25367 1.22861 0.96413 0.91683 1.00547 1.22674 0.94319 0.97390 0.86978 1.87987 1.69394 1.34032 1.39169 1.22670 0.93781 0.86969 0.97922 1.22793 0.97745 0.99216 0.91395 0.92711 0.94593 0.90411 0.88032 0.91714 0.86911 0.89225 0.88832 0.88589 0.88561 0.77456 0.90036 0.90244 0.91520 0.90563 0.89833 0.93929 0.93773 0.89280 0.92238 0.88465 0.92207 0.88422 0.89358 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.23 9.39 -34.44 -0.32 -14.56 16 8 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.97 4.92 -5.20 -0.03 5.94 16 10 N -0.54 -10.69 2.46 -177.08 -0.43 -11.13 16 11 C 0.13 1.86 5.46 -4.03 -0.02 1.84 16 12 C -0.17 -2.11 6.01 -90.62 -0.54 -2.65 16 13 C -0.18 -1.76 10.01 -26.73 -0.27 -2.03 16 14 C -0.17 -1.67 10.25 -26.73 -0.27 -1.94 16 15 C 0.57 11.16 7.70 -86.91 -0.67 10.49 16 16 S -0.66 -16.27 27.17 -107.50 -2.92 -19.19 16 17 N -0.70 -10.12 5.42 -62.03 -0.34 -10.45 16 18 C 0.13 1.65 5.13 -4.04 -0.02 1.63 16 19 C -0.13 -1.12 5.26 -26.73 -0.14 -1.26 16 20 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16 21 N -0.54 -4.36 4.73 -234.31 -1.11 -5.47 16 22 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 23 C 0.06 0.45 7.01 37.21 0.26 0.71 16 24 O -0.39 -3.48 10.83 -35.23 -0.38 -3.87 16 25 C 0.06 0.45 7.01 37.21 0.26 0.71 16 26 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.08 2.23 6.58 -51.93 -0.34 1.89 16 30 H 0.10 1.58 8.07 -51.93 -0.42 1.16 16 31 H 0.06 0.80 6.09 -51.93 -0.32 0.48 16 32 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.09 0.74 7.77 -51.93 -0.40 0.33 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 4.56 5.77 -40.82 -0.24 4.32 16 38 H 0.08 1.15 7.99 -51.93 -0.42 0.74 16 39 H 0.08 1.09 7.99 -51.93 -0.41 0.67 16 40 H 0.07 0.53 6.52 -51.93 -0.34 0.19 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.69 8.04 -51.93 -0.42 0.28 16 43 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.59 6.38 -51.93 -0.33 0.26 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 51 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 415.55 15.07 6.26 6.26 Total: -1.00 -34.09 415.55 -14.22 -48.30 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -9.09 Total: 2.71 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.92 Total: 1.35 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -1.14 Total: -52.51 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.38 Total: -3.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -16.27 SS G_CDS: -2.92 Total: -19.19 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.09 -14.22 -48.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790385.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.062 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds