Wall clock time and date at job start Sat Apr 11 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48500 * 109.46956 * 270.00208 * 3 2 1 5 5 H 1.48502 * 109.46887 * 30.00223 * 3 2 1 6 6 H 1.48500 * 109.46974 * 150.00680 * 3 2 1 7 7 C 1.37873 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00465 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47658 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00116 * 270.00501 * 10 9 7 12 12 C 1.53008 * 109.46802 * 269.99448 * 11 10 9 13 13 C 1.52994 * 117.49842 * 243.62009 * 12 11 10 14 14 C 1.52997 * 117.49565 * 174.99596 * 12 11 10 15 15 C 1.34777 * 120.00004 * 89.99748 * 10 9 7 16 16 S 1.71198 * 120.00059 * 0.02562 * 15 10 9 17 17 N 1.34786 * 119.99934 * 180.27556 * 15 10 9 18 18 C 1.46497 * 119.99732 * 179.72747 * 17 15 10 19 19 C 1.53005 * 109.46704 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46696 * 180.02562 * 19 18 17 21 21 N 1.46906 * 109.46668 * 180.02562 * 20 19 18 22 22 C 1.47008 * 110.99595 * 293.63045 * 21 20 19 23 23 C 1.53099 * 109.25777 * 177.61240 * 22 21 20 24 24 O 1.43011 * 109.26033 * 56.84610 * 23 22 21 25 25 C 1.43021 * 113.74120 * 301.33578 * 24 23 22 26 26 C 1.47019 * 110.99530 * 170.00083 * 21 20 19 27 27 H 0.96996 * 119.99853 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46990 * 60.00085 * 9 7 2 29 29 H 1.08996 * 109.47192 * 300.00461 * 9 7 2 30 30 H 1.08997 * 109.47351 * 29.99452 * 11 10 9 31 31 H 1.08996 * 109.47200 * 150.00044 * 11 10 9 32 32 H 1.09001 * 115.54827 * 29.33361 * 12 11 10 33 33 H 1.09001 * 117.50051 * 359.97438 * 13 12 11 34 34 H 1.09004 * 117.49539 * 145.02349 * 13 12 11 35 35 H 1.09004 * 117.49843 * 214.97984 * 14 12 11 36 36 H 1.09000 * 117.49930 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99685 * 359.73172 * 17 15 10 38 38 H 1.09003 * 109.47268 * 299.99680 * 18 17 15 39 39 H 1.09001 * 109.47150 * 60.00346 * 18 17 15 40 40 H 1.08995 * 109.47418 * 299.99716 * 19 18 17 41 41 H 1.09001 * 109.47199 * 60.00174 * 19 18 17 42 42 H 1.09003 * 109.47221 * 299.99445 * 20 19 18 43 43 H 1.08993 * 109.47355 * 59.99833 * 20 19 18 44 44 H 1.09003 * 109.51469 * 297.54284 * 22 21 20 45 45 H 1.08999 * 109.51097 * 57.67822 * 22 21 20 46 46 H 1.09006 * 109.50378 * 296.91422 * 23 22 21 47 47 H 1.08999 * 109.54947 * 176.81035 * 23 22 21 48 48 H 1.08995 * 109.50209 * 298.73467 * 25 24 23 49 49 H 1.09000 * 109.53837 * 178.62585 * 25 24 23 50 50 H 1.08994 * 109.50622 * 302.31994 * 26 21 20 51 51 H 1.08997 * 109.50676 * 62.41377 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7483 -5.3007 -1.7110 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9366 -3.0779 15 6 2.6409 -4.1248 1.1667 16 16 2.0842 -3.4746 2.6493 17 7 3.5210 -5.1457 1.1667 18 6 4.0016 -5.6984 2.4354 19 6 4.9838 -6.8378 2.1557 20 6 5.4852 -7.4155 3.4808 21 7 6.4287 -8.5090 3.2123 22 6 5.7489 -9.6472 2.5771 23 6 6.7768 -10.7371 2.2614 24 8 7.4512 -11.1125 3.4653 25 6 8.1247 -10.0280 4.1102 26 6 7.1104 -8.9311 4.4446 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.6868 -3.3878 -2.0289 31 1 3.6885 -4.5594 -1.1389 32 1 0.7114 -5.2096 -1.3876 33 1 3.3930 -6.8291 -1.5432 34 1 1.6928 -7.5444 -1.5338 35 1 1.1431 -6.2644 -3.6537 36 1 2.8433 -5.5493 -3.6624 37 1 3.8362 -5.5143 0.3266 38 1 4.5048 -4.9170 3.0048 39 1 3.1566 -6.0793 3.0091 40 1 4.4811 -7.6194 1.5862 41 1 5.8287 -6.4566 1.5823 42 1 5.9879 -6.6341 4.0508 43 1 4.6401 -7.7968 4.0539 44 1 4.9936 -10.0448 3.2550 45 1 5.2727 -9.3176 1.6537 46 1 7.5016 -10.3563 1.5418 47 1 6.2698 -11.6061 1.8420 48 1 8.8886 -9.6267 3.4444 49 1 8.5923 -10.3837 5.0283 50 1 7.6280 -8.0787 4.8844 51 1 6.3768 -9.3164 5.1527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728790385.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:11 Heat of formation + Delta-G solvation = -15.931297 kcal Electronic energy + Delta-G solvation = -27766.291731 eV Core-core repulsion = 24019.965600 eV Total energy + Delta-G solvation = -3746.326131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79042 -40.47827 -38.23161 -37.41829 -36.48526 -34.68903 -32.87430 -32.07610 -29.95052 -29.12325 -27.92353 -25.69610 -25.02164 -24.40574 -23.66206 -23.11527 -22.29167 -21.37953 -21.20627 -19.09702 -18.68119 -18.27663 -17.44040 -17.18144 -16.78462 -16.63039 -16.28489 -16.12929 -15.97730 -15.74131 -15.61997 -15.45932 -15.22696 -14.70413 -14.60215 -14.18276 -13.87209 -13.52785 -13.30167 -13.19329 -12.98081 -12.83694 -12.65827 -12.61172 -12.52774 -12.36921 -12.32218 -12.18672 -12.15436 -12.01328 -11.77796 -11.55152 -11.37722 -11.33741 -10.97411 -10.65971 -10.59120 -9.71547 -9.43267 -8.81918 -8.33893 -8.17798 -6.28905 0.60772 1.11188 1.37439 1.42328 1.51245 1.78054 2.34223 2.45095 2.74768 2.88431 2.98676 3.14872 3.66916 3.80898 3.82523 3.92112 3.93116 3.96523 4.02868 4.08712 4.12938 4.21962 4.30767 4.38872 4.46212 4.50884 4.56249 4.59956 4.66597 4.72150 4.75803 4.76088 4.82548 4.84012 4.92374 4.99812 5.01888 5.07864 5.12307 5.17189 5.23236 5.26578 5.29354 5.64229 5.81215 5.91469 5.94039 5.97740 6.05972 6.19478 6.52111 6.75817 7.37271 8.89922 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002439 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.139456 B =11475.668892 C =12770.514477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.259 3.741 10 N -0.541 5.541 11 C 0.125 3.875 12 C -0.197 4.197 13 C -0.163 4.163 14 C -0.154 4.154 15 C 0.586 3.414 16 S -0.765 6.765 17 N -0.671 5.671 18 C 0.133 3.867 19 C -0.110 4.110 20 C 0.063 3.937 21 N -0.540 5.540 22 C 0.013 3.987 23 C 0.061 3.939 24 O -0.409 6.409 25 C 0.063 3.937 26 C 0.016 3.984 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.063 0.937 49 H 0.112 0.888 50 H 0.097 0.903 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.038 -24.060 -2.752 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.138 3.862 10 N -0.244 5.244 11 C 0.000 4.000 12 C -0.217 4.217 13 C -0.200 4.200 14 C -0.192 4.192 15 C 0.222 3.778 16 S -0.638 6.638 17 N -0.305 5.305 18 C 0.009 3.991 19 C -0.148 4.148 20 C -0.066 4.066 21 N -0.265 5.265 22 C -0.115 4.115 23 C -0.015 4.015 24 O -0.328 6.328 25 C -0.014 4.014 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.120 0.880 46 H 0.082 0.918 47 H 0.129 0.871 48 H 0.081 0.919 49 H 0.130 0.870 50 H 0.115 0.885 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.902 -23.558 -2.101 28.500 hybrid contribution -0.559 0.930 -0.214 1.106 sum 15.343 -22.627 -2.315 27.436 Atomic orbital electron populations 1.70035 1.07351 1.27904 1.51105 1.25662 0.95658 1.02500 0.94655 0.85497 0.78284 0.78971 0.78522 1.18856 1.21014 1.20152 1.21337 0.92734 0.91215 1.50926 0.93276 1.19282 0.87332 0.81817 0.97787 1.47522 1.41818 1.31839 1.03271 1.21593 0.97100 0.96443 0.84852 1.22584 0.99759 0.94881 1.04490 1.23193 1.02355 0.92983 1.01444 1.23043 1.04251 1.02097 0.89770 1.21467 0.82892 0.83251 0.90212 1.93335 1.76151 1.76067 1.18253 1.44835 1.42039 1.31882 1.11733 1.21512 0.97846 0.96140 0.83586 1.21649 0.98281 0.96301 0.98599 1.21920 0.94456 0.93821 0.96386 1.62221 1.30067 1.08542 1.25717 1.22914 0.96325 0.91564 1.00742 1.22798 0.94316 0.97912 0.86511 1.87961 1.69744 1.35122 1.39941 1.22778 0.93563 0.86520 0.98549 1.22837 0.97684 0.99697 0.91023 0.92588 0.95411 0.94572 0.88872 0.88401 0.89870 0.86794 0.88166 0.87982 0.86945 0.75050 0.91635 0.91431 0.89750 0.89577 0.89969 0.94491 0.94723 0.88025 0.91844 0.87088 0.91908 0.87042 0.88484 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.29 21.45 0.28 -55.52 16 2 C 0.01 0.83 5.46 84.65 0.46 1.30 16 3 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.52 -29.45 9.39 25.60 0.24 -29.21 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.26 13.45 4.92 85.63 0.42 13.87 16 10 N -0.54 -21.54 2.46 -714.17 -1.75 -23.29 16 11 C 0.12 3.47 5.46 86.38 0.47 3.94 16 12 C -0.20 -4.60 6.01 -10.79 -0.06 -4.67 16 13 C -0.16 -2.45 10.01 30.59 0.31 -2.15 16 14 C -0.15 -2.49 10.25 30.59 0.31 -2.18 16 15 C 0.59 23.24 7.70 179.05 1.38 24.62 16 16 S -0.77 -39.57 27.17 -56.49 -1.53 -41.11 16 17 N -0.67 -18.04 5.42 -350.15 -1.90 -19.94 16 18 C 0.13 3.16 5.13 86.38 0.44 3.60 16 19 C -0.11 -1.59 5.26 30.60 0.16 -1.43 16 20 C 0.06 0.93 4.96 86.30 0.43 1.35 16 21 N -0.54 -7.56 4.73 -895.21 -4.23 -11.79 16 22 C 0.01 0.16 5.44 86.32 0.47 0.62 16 23 C 0.06 0.73 7.01 72.02 0.50 1.24 16 24 O -0.41 -6.66 10.83 -148.98 -1.61 -8.27 16 25 C 0.06 0.77 7.01 72.02 0.50 1.27 16 26 C 0.02 0.20 5.64 86.31 0.49 0.69 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 29 H 0.04 2.20 6.58 -2.39 -0.02 2.19 16 30 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 31 H 0.10 2.03 6.09 -2.39 -0.01 2.01 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.11 1.19 7.77 -2.39 -0.02 1.17 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 8.02 5.77 -92.71 -0.54 7.49 16 38 H 0.07 1.84 7.99 -2.39 -0.02 1.82 16 39 H 0.07 1.83 7.99 -2.39 -0.02 1.82 16 40 H 0.08 0.98 6.52 -2.39 -0.02 0.96 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 43 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 44 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.10 0.98 6.38 -2.39 -0.02 0.96 16 46 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 51 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -78.67 415.55 -1.83 -80.50 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.36 Total: 19.05 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.53 Total: 12.89 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -7.60 Total: -110.56 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -1.61 Total: -8.27 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: -39.57 SS G_CDS: -1.53 Total: -41.11 kcal Total: -78.67 -1.83 -80.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790385.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.564 kcal (2) G-P(sol) polarization free energy of solvation -78.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds