Wall clock time and date at job start Sat Apr 11 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47158 * 299.99773 * 3 2 1 6 6 H 1.48496 * 109.47415 * 60.00073 * 3 2 1 7 7 C 1.38810 * 120.00671 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00498 * 196.56061 * 7 2 1 9 9 N 1.36946 * 119.99475 * 16.56091 * 7 2 1 10 10 C 1.46920 * 120.62557 * 207.64275 * 9 7 2 11 11 C 1.53197 * 108.77583 * 233.58414 * 10 9 7 12 12 C 1.53038 * 109.31112 * 305.37180 * 11 10 9 13 13 O 1.45201 * 109.46055 * 181.36933 * 12 11 10 14 14 C 1.34228 * 117.00539 * 149.99836 * 13 12 11 15 15 O 1.20828 * 119.99685 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00353 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.55661 * 309.19439 * 16 14 13 18 18 C 1.53119 * 117.51636 * 163.45786 * 16 14 13 19 19 C 1.52367 * 117.51615 * 94.99648 * 16 14 13 20 20 C 1.53777 * 121.20776 * 217.96067 * 19 16 14 21 21 C 1.54485 * 102.20899 * 170.00457 * 20 19 16 22 22 C 1.51421 * 105.22869 * 334.25155 * 21 20 19 23 23 C 1.38465 * 130.36704 * 196.79518 * 22 21 20 24 24 C 1.38086 * 120.27280 * 180.16781 * 23 22 21 25 25 C 1.38259 * 119.90972 * 359.97438 * 24 23 22 26 26 C 1.38089 * 119.94027 * 359.97438 * 25 24 23 27 27 C 1.38388 * 109.79630 * 16.91269 * 22 21 20 28 28 C 1.53040 * 109.54114 * 61.36068 * 12 11 10 29 29 C 1.46923 * 120.62883 * 27.61846 * 9 7 2 30 30 H 0.96994 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58516 * 113.80372 * 10 9 7 32 32 H 1.09001 * 109.59278 * 353.37462 * 10 9 7 33 33 H 1.09006 * 109.49552 * 65.31703 * 11 10 9 34 34 H 1.08995 * 109.49873 * 185.41350 * 11 10 9 35 35 H 1.09002 * 109.46221 * 301.33644 * 12 11 10 36 36 H 1.09008 * 117.51184 * 359.97438 * 18 16 14 37 37 H 1.09004 * 117.51771 * 145.06451 * 18 16 14 38 38 H 1.09005 * 110.85922 * 288.17945 * 20 19 16 39 39 H 1.09003 * 110.85722 * 51.82404 * 20 19 16 40 40 H 1.09000 * 110.28711 * 215.31747 * 21 20 19 41 41 H 1.09000 * 110.37361 * 93.23561 * 21 20 19 42 42 H 1.08003 * 119.86299 * 0.17343 * 23 22 21 43 43 H 1.08001 * 120.05234 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.03133 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.86118 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.49718 * 58.58793 * 28 12 11 47 47 H 1.09002 * 109.49837 * 178.67955 * 28 12 11 48 48 H 1.09002 * 109.59028 * 6.62746 * 29 9 7 49 49 H 1.08998 * 109.58712 * 246.19605 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0567 -1.2213 0.2671 9 7 1.3683 -2.3636 -0.3370 10 6 1.8224 -3.6533 0.2006 11 6 2.0626 -4.6168 -0.9660 12 6 0.7958 -4.7028 -1.8203 13 8 1.0091 -5.6400 -2.9087 14 6 -0.0662 -6.3044 -3.3603 15 8 -1.1499 -6.1090 -2.8631 16 6 0.0782 -7.2941 -4.4876 17 1 0.6010 -6.9276 -5.3710 18 6 -1.0636 -8.2910 -4.7043 19 6 0.2623 -8.7606 -4.1176 20 6 1.2076 -9.6717 -4.9182 21 6 1.2624 -10.9399 -4.0377 22 6 0.9558 -10.4629 -2.6337 23 6 1.1642 -11.0794 -1.4115 24 6 0.7963 -10.4463 -0.2407 25 6 0.2178 -9.1915 -0.2879 26 6 0.0098 -8.5738 -1.5054 27 6 0.3771 -9.2067 -2.6814 28 6 0.4703 -3.3217 -2.3936 29 6 0.2120 -2.3436 -1.2432 30 1 -0.4850 0.8400 -0.0004 31 1 1.0585 -4.0630 0.8615 32 1 2.7504 -3.5119 0.7548 33 1 2.8886 -4.2508 -1.5759 34 1 2.3071 -5.6052 -0.5771 35 1 -0.0354 -5.0453 -1.2039 36 1 -1.9189 -8.2312 -4.0311 37 1 -1.2917 -8.5803 -5.7301 38 1 0.7898 -9.8983 -5.8992 39 1 2.1955 -9.2205 -5.0107 40 1 2.2567 -11.3847 -4.0771 41 1 0.5131 -11.6611 -4.3640 42 1 1.6165 -12.0594 -1.3737 43 1 0.9601 -10.9307 0.7106 44 1 -0.0711 -8.6947 0.6265 45 1 -0.4418 -7.5935 -1.5407 46 1 1.3112 -2.9679 -2.9901 47 1 -0.4186 -3.3884 -3.0209 48 1 0.0774 -1.3380 -1.6418 49 1 -0.6832 -2.6465 -0.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770782623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:26 Heat of formation + Delta-G solvation = -15.019033 kcal Electronic energy + Delta-G solvation = -30211.401280 eV Core-core repulsion = 26297.378005 eV Total energy + Delta-G solvation = -3914.023275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.21580 -39.87769 -37.82545 -36.97470 -35.76897 -34.01587 -32.69569 -30.83540 -30.30673 -29.70991 -29.10978 -26.06689 -25.15815 -24.34676 -22.89426 -22.26428 -21.94679 -21.28041 -20.31929 -19.74073 -19.22043 -17.61641 -17.00330 -16.53279 -16.21393 -15.90360 -15.47570 -15.11210 -14.87394 -14.58834 -14.12130 -13.99992 -13.67595 -13.50265 -13.22259 -13.11351 -12.83944 -12.73641 -12.63618 -12.51084 -12.31498 -11.97430 -11.90962 -11.53997 -11.33185 -11.27515 -11.16435 -10.98160 -10.76752 -10.73518 -10.70478 -10.51533 -10.32876 -10.22100 -10.16818 -9.90907 -9.66600 -9.40579 -8.91795 -8.58950 -8.49761 -6.74030 -5.81512 -3.24721 1.13204 1.26181 2.26426 2.77867 3.36374 3.37786 3.44260 3.46582 3.77117 4.07796 4.20195 4.25980 4.47410 4.49549 4.65772 4.90933 4.91811 4.98804 5.06762 5.12895 5.23782 5.26291 5.36397 5.37477 5.41361 5.44195 5.50223 5.52882 5.53653 5.65377 5.72720 5.75727 5.81837 5.84712 6.00442 6.02339 6.20526 6.29471 6.31775 6.43237 6.47113 6.48331 6.51415 6.59178 6.69016 6.85505 6.87118 6.94818 7.31215 7.61706 7.77410 7.99462 8.41317 9.17299 9.80196 10.36268 11.27322 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.002707 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.252341 B =10339.575126 C =11013.135642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.127 4.127 12 C 0.099 3.901 13 O -0.351 6.351 14 C 0.493 3.507 15 O -0.507 6.507 16 C -0.152 4.152 17 H 0.141 0.859 18 C -0.124 4.124 19 C -0.064 4.064 20 C -0.084 4.084 21 C -0.078 4.078 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.106 4.106 27 C -0.068 4.068 28 C -0.154 4.154 29 C 0.175 3.825 30 H 0.254 0.746 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -23.760 -9.397 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.167 4.167 12 C 0.045 3.955 13 O -0.267 6.267 14 C 0.336 3.664 15 O -0.396 6.396 16 C -0.170 4.170 17 H 0.158 0.842 18 C -0.161 4.161 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.068 4.068 28 C -0.193 4.193 29 C 0.049 3.951 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.979 -23.509 -9.191 25.261 hybrid contribution 0.251 1.092 0.119 1.127 sum 1.230 -22.417 -9.072 24.215 Atomic orbital electron populations 1.70028 1.05286 1.25524 1.53861 1.25070 0.95326 0.98514 1.00770 0.86202 0.79354 0.83799 0.77291 1.20194 1.21529 1.21678 1.19241 0.92552 0.84600 1.41920 0.91413 1.44140 1.34749 1.01647 1.51002 1.20884 0.98252 0.86546 0.92126 1.22223 0.96207 1.00034 0.98197 1.22938 0.99575 0.87401 0.85563 1.86538 1.37400 1.52114 1.50663 1.22290 0.82731 0.79170 0.82189 1.90654 1.27907 1.63982 1.57073 1.21836 1.06985 0.89487 0.98735 0.84161 1.23171 0.91863 0.98103 1.02955 1.20435 1.00042 0.92841 0.93063 1.21887 0.98944 0.93721 0.97586 1.21028 1.02263 0.97583 0.90579 1.20493 0.98896 0.94852 0.94880 1.20559 1.01245 0.99968 0.91204 1.21074 0.98933 0.95366 0.97995 1.21082 0.99314 0.95381 0.97577 1.21046 0.99223 1.00543 0.91583 1.19595 0.99752 0.95347 0.92143 1.22677 1.00820 0.94663 1.01166 1.20783 0.88593 0.98125 0.87634 0.93567 0.96141 0.91804 0.91157 0.92315 0.90525 0.87071 0.86757 0.89922 0.89816 0.90371 0.89980 0.86221 0.85778 0.85629 0.85642 0.91697 0.92806 0.88652 0.96021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 11.13 55.49 0.62 -25.72 16 2 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -15.04 3.00 -172.32 -0.52 -15.56 16 10 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 11 C -0.13 -2.34 5.74 -26.61 -0.15 -2.50 16 12 C 0.10 1.88 2.42 -26.69 -0.06 1.82 16 13 O -0.35 -6.12 9.88 -39.25 -0.39 -6.51 16 14 C 0.49 7.90 5.32 36.00 0.19 8.09 16 15 O -0.51 -9.33 14.13 -18.75 -0.26 -9.59 16 16 C -0.15 -1.78 6.17 -92.04 -0.57 -2.35 16 17 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.12 -1.22 9.77 -26.97 -0.26 -1.49 16 19 C -0.06 -0.67 2.34 -155.82 -0.36 -1.03 16 20 C -0.08 -0.63 6.85 -25.55 -0.17 -0.81 16 21 C -0.08 -0.59 6.77 -26.75 -0.18 -0.77 16 22 C -0.09 -0.97 6.14 -104.13 -0.64 -1.61 16 23 C -0.11 -1.11 10.03 -39.55 -0.40 -1.51 16 24 C -0.12 -1.20 10.05 -39.63 -0.40 -1.60 16 25 C -0.12 -1.42 10.05 -39.63 -0.40 -1.82 16 26 C -0.11 -1.49 9.25 -39.54 -0.37 -1.85 16 27 C -0.07 -0.85 5.80 -104.41 -0.61 -1.46 16 28 C -0.15 -3.20 5.72 -26.61 -0.15 -3.35 16 29 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 36 H 0.11 1.27 7.78 -51.92 -0.40 0.87 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.13 2.02 4.81 -52.49 -0.25 1.76 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 49 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -31.88 389.52 -12.16 -44.04 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.64 Total: 2.77 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.81 Total: -11.97 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.10 Total: -41.28 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.65 Total: -16.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.88 -12.16 -44.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770782623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.023 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds