Wall clock time and date at job start Sat Apr 11 2020 06:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47158 * 299.99773 * 3 2 1 6 6 H 1.48496 * 109.47415 * 60.00073 * 3 2 1 7 7 C 1.38810 * 120.00671 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00498 * 196.56061 * 7 2 1 9 9 N 1.36946 * 119.99475 * 16.56091 * 7 2 1 10 10 C 1.46920 * 120.62557 * 207.64275 * 9 7 2 11 11 C 1.53197 * 108.77583 * 233.58414 * 10 9 7 12 12 C 1.53038 * 109.31112 * 305.37180 * 11 10 9 13 13 O 1.45201 * 109.46055 * 181.36933 * 12 11 10 14 14 C 1.34228 * 117.00539 * 149.99836 * 13 12 11 15 15 O 1.20828 * 119.99685 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00353 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.55661 * 309.19439 * 16 14 13 18 18 C 1.53119 * 117.51636 * 163.45786 * 16 14 13 19 19 C 1.52367 * 117.51615 * 94.99648 * 16 14 13 20 20 C 1.53777 * 121.20776 * 217.96067 * 19 16 14 21 21 C 1.54485 * 102.20899 * 170.00457 * 20 19 16 22 22 C 1.51421 * 105.22869 * 334.25155 * 21 20 19 23 23 C 1.38465 * 130.36704 * 196.79518 * 22 21 20 24 24 C 1.38086 * 120.27280 * 180.16781 * 23 22 21 25 25 C 1.38259 * 119.90972 * 359.97438 * 24 23 22 26 26 C 1.38089 * 119.94027 * 359.97438 * 25 24 23 27 27 C 1.38388 * 109.79630 * 16.91269 * 22 21 20 28 28 C 1.53040 * 109.54114 * 61.36068 * 12 11 10 29 29 C 1.46923 * 120.62883 * 27.61846 * 9 7 2 30 30 H 0.96994 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58516 * 113.80372 * 10 9 7 32 32 H 1.09001 * 109.59278 * 353.37462 * 10 9 7 33 33 H 1.09006 * 109.49552 * 65.31703 * 11 10 9 34 34 H 1.08995 * 109.49873 * 185.41350 * 11 10 9 35 35 H 1.09002 * 109.46221 * 301.33644 * 12 11 10 36 36 H 1.09008 * 117.51184 * 359.97438 * 18 16 14 37 37 H 1.09004 * 117.51771 * 145.06451 * 18 16 14 38 38 H 1.09005 * 110.85922 * 288.17945 * 20 19 16 39 39 H 1.09003 * 110.85722 * 51.82404 * 20 19 16 40 40 H 1.09000 * 110.28711 * 215.31747 * 21 20 19 41 41 H 1.09000 * 110.37361 * 93.23561 * 21 20 19 42 42 H 1.08003 * 119.86299 * 0.17343 * 23 22 21 43 43 H 1.08001 * 120.05234 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.03133 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.86118 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.49718 * 58.58793 * 28 12 11 47 47 H 1.09002 * 109.49837 * 178.67955 * 28 12 11 48 48 H 1.09002 * 109.59028 * 6.62746 * 29 9 7 49 49 H 1.08998 * 109.58712 * 246.19605 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0567 -1.2213 0.2671 9 7 1.3683 -2.3636 -0.3370 10 6 1.8224 -3.6533 0.2006 11 6 2.0626 -4.6168 -0.9660 12 6 0.7958 -4.7028 -1.8203 13 8 1.0091 -5.6400 -2.9087 14 6 -0.0662 -6.3044 -3.3603 15 8 -1.1499 -6.1090 -2.8631 16 6 0.0782 -7.2941 -4.4876 17 1 0.6010 -6.9276 -5.3710 18 6 -1.0636 -8.2910 -4.7043 19 6 0.2623 -8.7606 -4.1176 20 6 1.2076 -9.6717 -4.9182 21 6 1.2624 -10.9399 -4.0377 22 6 0.9558 -10.4629 -2.6337 23 6 1.1642 -11.0794 -1.4115 24 6 0.7963 -10.4463 -0.2407 25 6 0.2178 -9.1915 -0.2879 26 6 0.0098 -8.5738 -1.5054 27 6 0.3771 -9.2067 -2.6814 28 6 0.4703 -3.3217 -2.3936 29 6 0.2120 -2.3436 -1.2432 30 1 -0.4850 0.8400 -0.0004 31 1 1.0585 -4.0630 0.8615 32 1 2.7504 -3.5119 0.7548 33 1 2.8886 -4.2508 -1.5759 34 1 2.3071 -5.6052 -0.5771 35 1 -0.0354 -5.0453 -1.2039 36 1 -1.9189 -8.2312 -4.0311 37 1 -1.2917 -8.5803 -5.7301 38 1 0.7898 -9.8983 -5.8992 39 1 2.1955 -9.2205 -5.0107 40 1 2.2567 -11.3847 -4.0771 41 1 0.5131 -11.6611 -4.3640 42 1 1.6165 -12.0594 -1.3737 43 1 0.9601 -10.9307 0.7106 44 1 -0.0711 -8.6947 0.6265 45 1 -0.4418 -7.5935 -1.5407 46 1 1.3112 -2.9679 -2.9901 47 1 -0.4186 -3.3884 -3.0209 48 1 0.0774 -1.3380 -1.6418 49 1 -0.6832 -2.6465 -0.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770782623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:24 Heat of formation + Delta-G solvation = -29.489580 kcal Electronic energy + Delta-G solvation = -30212.028770 eV Core-core repulsion = 26297.378005 eV Total energy + Delta-G solvation = -3914.650765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.25721 -40.99621 -39.26334 -38.10399 -37.26201 -34.80665 -34.60177 -32.16501 -31.69708 -31.55104 -29.83644 -27.57750 -26.34794 -25.51281 -24.04413 -23.72525 -23.58936 -22.08355 -21.40241 -21.12179 -20.53152 -18.92198 -18.84607 -17.80396 -17.23494 -17.02057 -16.81581 -16.31097 -15.94661 -15.73702 -15.47925 -15.42410 -15.10288 -14.92485 -14.73246 -14.45673 -14.20698 -14.06780 -13.75896 -13.40045 -13.30171 -13.13623 -13.08752 -12.89869 -12.67865 -12.65626 -12.55717 -12.40127 -12.18395 -12.11014 -11.98746 -11.94319 -11.82506 -11.61002 -11.49006 -11.37612 -11.23394 -11.11436 -10.60498 -9.77953 -9.39403 -8.81452 -7.93157 -5.40206 0.28063 0.39849 1.05594 1.45008 1.47150 1.54268 1.58437 2.47874 2.52464 2.93306 3.22058 3.28682 3.43816 3.46245 3.51696 3.70101 3.72352 3.77110 3.80623 4.04602 4.09679 4.11957 4.13352 4.30832 4.36958 4.46513 4.49208 4.59595 4.61068 4.65295 4.72119 4.77174 4.80294 4.81076 4.87789 4.90328 4.98023 4.99376 5.08154 5.14471 5.17104 5.22676 5.29283 5.31377 5.46327 5.50114 5.56368 5.58857 5.61527 5.64185 6.04951 6.32186 6.67408 7.06342 7.75215 8.28432 9.14743 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.002707 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.252341 B =10339.575126 C =11013.135642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.145 3.855 11 C -0.112 4.112 12 C 0.108 3.892 13 O -0.350 6.350 14 C 0.488 3.512 15 O -0.540 6.540 16 C -0.167 4.167 17 H 0.169 0.831 18 C -0.114 4.114 19 C -0.060 4.060 20 C -0.078 4.078 21 C -0.075 4.075 22 C -0.093 4.093 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.094 4.094 28 C -0.139 4.139 29 C 0.185 3.815 30 H 0.251 0.749 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.066 0.934 49 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -26.679 -11.438 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.020 3.980 11 C -0.151 4.151 12 C 0.054 3.946 13 O -0.266 6.266 14 C 0.334 3.666 15 O -0.430 6.430 16 C -0.186 4.186 17 H 0.186 0.814 18 C -0.150 4.150 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.094 4.094 28 C -0.178 4.178 29 C 0.059 3.941 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.172 0.828 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.141 0.859 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 3.257 -26.463 -11.237 28.934 hybrid contribution -0.514 1.894 0.827 2.129 sum 2.743 -24.569 -10.410 26.824 Atomic orbital electron populations 1.70193 1.06879 1.26007 1.55318 1.25895 0.96089 1.01840 1.00959 0.85133 0.78718 0.79384 0.76759 1.18686 1.21690 1.21852 1.19611 0.93011 0.85555 1.41230 0.90757 1.44382 1.34639 1.02697 1.51623 1.21028 0.98373 0.85366 0.93247 1.22016 0.95669 1.00453 0.97005 1.22587 0.99342 0.86711 0.85994 1.86538 1.38192 1.51909 1.49995 1.23259 0.81783 0.79044 0.82563 1.90639 1.29045 1.64970 1.58359 1.22042 1.09482 0.89264 0.97784 0.81411 1.23302 0.90674 0.96564 1.04486 1.20702 1.00841 0.91767 0.92686 1.22003 0.98390 0.92606 0.98468 1.21145 1.03898 0.97906 0.88184 1.20985 0.97541 0.93959 0.96851 1.20985 1.00324 1.01035 0.90722 1.21385 0.97937 0.94436 0.99660 1.21215 1.00488 0.96669 0.97085 1.20992 1.01146 0.99957 0.93399 1.19947 1.00319 0.96552 0.92614 1.22421 1.00912 0.94965 0.99547 1.20479 0.87833 0.97392 0.88434 0.93974 0.96626 0.90649 0.90831 0.89849 0.92344 0.89616 0.82775 0.86840 0.89448 0.88385 0.88219 0.83118 0.83361 0.85855 0.88841 0.91440 0.92710 0.91582 0.98755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 11.13 21.65 0.24 -56.55 16 2 C -0.05 -2.99 4.93 84.86 0.42 -2.57 16 3 Si 0.97 45.26 29.58 68.60 2.03 47.29 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.26 -14.72 9.59 84.03 0.81 -13.92 16 8 H 0.07 3.97 7.88 -2.92 -0.02 3.94 16 9 N -0.61 -31.82 3.00 -699.10 -2.09 -33.91 16 10 C 0.15 6.24 6.52 86.37 0.56 6.80 16 11 C -0.11 -4.12 5.74 30.67 0.18 -3.95 16 12 C 0.11 4.24 2.42 30.62 0.07 4.31 16 13 O -0.35 -12.32 9.88 -51.39 -0.51 -12.83 16 14 C 0.49 15.99 5.32 71.23 0.38 16.36 16 15 O -0.54 -21.06 14.13 21.96 0.31 -20.75 16 16 C -0.17 -3.70 6.17 -11.71 -0.07 -3.77 16 17 H 0.17 2.72 8.14 -2.39 -0.02 2.70 16 18 C -0.11 -2.04 9.77 30.44 0.30 -1.74 16 19 C -0.06 -1.12 2.34 -53.03 -0.12 -1.25 16 20 C -0.08 -0.83 6.85 31.36 0.21 -0.62 16 21 C -0.07 -0.80 6.77 30.58 0.21 -0.59 16 22 C -0.09 -1.74 6.14 -19.55 -0.12 -1.86 16 23 C -0.11 -1.95 10.03 22.29 0.22 -1.72 16 24 C -0.12 -2.28 10.05 22.24 0.22 -2.05 16 25 C -0.14 -3.48 10.05 22.24 0.22 -3.26 16 26 C -0.14 -4.02 9.25 22.30 0.21 -3.82 16 27 C -0.09 -2.28 5.80 -19.72 -0.11 -2.40 16 28 C -0.14 -6.00 5.72 30.67 0.18 -5.83 16 29 C 0.18 9.60 5.31 86.36 0.46 10.06 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 3.03 7.93 -2.39 -0.02 3.01 16 33 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.51 7.16 -2.39 -0.02 2.49 16 36 H 0.09 2.00 7.78 -2.38 -0.02 1.98 16 37 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 0.56 8.12 -2.38 -0.02 0.54 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 45 H 0.09 3.29 4.81 -2.91 -0.01 3.27 16 46 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 47 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.07 3.81 6.00 -2.39 -0.01 3.79 16 49 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -73.34 389.52 5.13 -68.20 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.94 Total: 20.34 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.22 Total: -11.79 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -1.85 Total: -90.46 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.20 Total: -33.58 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.34 5.13 -68.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770782623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.712 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds