Wall clock time and date at job start Sat Apr 11 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47516 * 270.00571 * 3 2 1 5 5 H 1.48504 * 109.46852 * 30.00969 * 3 2 1 6 6 H 1.48504 * 109.47021 * 150.00198 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99973 * 163.62050 * 7 2 1 9 9 C 1.41387 * 120.00234 * 343.61546 * 7 2 1 10 10 C 1.40731 * 120.24598 * 334.06878 * 9 7 2 11 11 C 1.37594 * 119.75136 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.24392 * 359.73108 * 11 10 9 13 13 C 1.38610 * 120.50094 * 0.55011 * 12 11 10 14 14 C 1.37640 * 120.24574 * 359.44888 * 13 12 11 15 15 C 1.50703 * 120.12615 * 180.25422 * 14 13 12 16 16 C 1.50694 * 109.46971 * 265.00054 * 15 14 13 17 17 O 1.21279 * 120.00286 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99884 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00172 * 180.02562 * 18 16 15 20 20 H 1.09003 * 112.82692 * 23.89249 * 19 18 16 21 21 C 1.53848 * 113.58122 * 252.69393 * 19 18 16 22 22 H 1.09009 * 116.27380 * 150.29422 * 21 19 18 23 23 C 1.54423 * 112.95524 * 13.16371 * 21 19 18 24 24 C 1.54437 * 104.15954 * 266.20243 * 23 21 19 25 25 O 1.44359 * 104.81029 * 24.41939 * 24 23 21 26 26 C 1.44263 * 105.51143 * 319.52854 * 25 24 23 27 27 H 1.08997 * 114.87958 * 269.65522 * 26 25 24 28 28 C 1.52839 * 113.66209 * 132.93884 * 26 25 24 29 29 C 1.53000 * 121.01235 * 44.85939 * 28 26 25 30 30 C 1.53930 * 86.80012 * 100.58816 * 29 28 26 31 31 C 1.52968 * 121.07324 * 153.15045 * 28 26 25 32 32 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.12846 * 359.97438 * 10 9 7 34 34 H 1.07998 * 119.88135 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.74802 * 180.29377 * 12 11 10 36 36 H 1.08002 * 119.87709 * 179.72542 * 13 12 11 37 37 H 1.09002 * 109.47197 * 24.99742 * 15 14 13 38 38 H 1.08998 * 109.46995 * 144.99629 * 15 14 13 39 39 H 0.97000 * 119.99716 * 359.97438 * 18 16 15 40 40 H 1.09005 * 110.49672 * 147.53016 * 23 21 19 41 41 H 1.08998 * 110.49511 * 24.87156 * 23 21 19 42 42 H 1.09001 * 110.37487 * 265.58713 * 24 23 21 43 43 H 1.09006 * 110.37097 * 143.25046 * 24 23 21 44 44 H 1.08997 * 113.65846 * 215.06580 * 29 28 26 45 45 H 1.09003 * 113.65829 * 346.11209 * 29 28 26 46 46 H 1.08999 * 113.58824 * 270.19155 * 30 29 28 47 47 H 1.09000 * 113.65252 * 139.40044 * 30 29 28 48 48 H 1.09004 * 113.66153 * 13.93641 * 31 28 26 49 49 H 1.09001 * 113.65721 * 144.98523 * 31 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 -1.4000 5 1 1.4397 2.6526 0.7003 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0551 -1.2308 -0.2643 9 6 1.3441 -2.4117 0.3443 10 6 0.2135 -2.3808 1.1817 11 6 -0.4244 -3.5546 1.5113 12 6 0.0395 -4.7642 1.0170 13 6 1.1555 -4.8072 0.1960 14 6 1.8093 -3.6454 -0.1466 15 6 3.0190 -3.6947 -1.0440 16 6 4.2683 -3.7238 -0.2018 17 8 4.1846 -3.7057 1.0080 18 7 5.4787 -3.7688 -0.7930 19 6 6.6932 -3.7976 0.0257 20 1 6.5181 -4.1876 1.0285 21 6 7.4800 -2.4757 0.0063 22 1 8.0516 -2.2411 0.9044 23 6 6.6751 -1.3045 -0.5980 24 6 7.0852 -1.2928 -2.0869 25 8 7.5182 -2.6423 -2.3610 26 6 8.2698 -3.0500 -1.1991 27 1 9.3374 -2.8354 -1.2451 28 6 7.8903 -4.4359 -0.6783 29 6 7.7052 -5.6145 -1.6361 30 6 9.1177 -6.0629 -1.2201 31 6 8.8960 -5.2918 0.0937 32 1 -0.4851 0.8400 0.0004 33 1 -0.1517 -1.4394 1.5650 34 1 -1.2920 -3.5333 2.1541 35 1 -0.4702 -5.6802 1.2769 36 1 1.5108 -5.7553 -0.1797 37 1 2.9766 -4.5916 -1.6621 38 1 3.0327 -2.8127 -1.6841 39 1 5.5456 -3.7829 -1.7606 40 1 6.9503 -0.3649 -0.1189 41 1 5.6049 -1.4855 -0.4984 42 1 7.9036 -0.5914 -2.2496 43 1 6.2318 -1.0334 -2.7135 44 1 6.9194 -6.3059 -1.3321 45 1 7.6303 -5.3198 -2.6829 46 1 9.9089 -5.6453 -1.8427 47 1 9.2118 -7.1402 -1.0829 48 1 9.7735 -4.7394 0.4299 49 1 8.4441 -5.8929 0.8827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776983839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:32 Heat of formation + Delta-G solvation = -29.449285 kcal Electronic energy + Delta-G solvation = -30955.490954 eV Core-core repulsion = 27040.841936 eV Total energy + Delta-G solvation = -3914.649018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.72297 -40.41381 -38.98292 -38.59625 -35.57957 -35.49260 -33.71886 -32.94770 -31.51994 -31.33880 -28.65899 -26.98346 -26.57873 -25.89616 -24.92375 -22.98443 -22.83153 -22.34230 -21.08578 -20.76465 -19.41931 -19.04017 -18.11120 -17.33218 -17.20042 -17.00317 -16.91155 -16.21646 -16.16278 -15.97859 -15.61122 -15.38128 -15.29784 -14.90697 -14.50559 -14.37121 -14.12654 -13.57786 -13.46063 -13.37417 -13.26938 -12.90121 -12.84351 -12.75907 -12.70006 -12.64071 -12.51663 -12.42491 -12.14176 -12.10675 -11.65608 -11.44590 -11.32759 -11.26999 -11.20530 -11.02069 -10.83910 -10.73465 -10.46397 -9.83433 -9.22604 -9.16067 -8.59569 -6.28660 0.99405 1.13132 1.33855 1.45183 1.52495 1.83857 2.18827 2.27039 2.66289 2.79042 3.22103 3.52448 3.63264 3.77488 3.80110 3.85982 3.96810 4.06735 4.14680 4.22727 4.31766 4.37581 4.39303 4.41969 4.55945 4.59680 4.63570 4.70473 4.77165 4.79329 4.85657 4.87086 4.90620 4.92050 5.03901 5.08642 5.12259 5.14388 5.17272 5.22079 5.37065 5.42054 5.54840 5.56075 5.65393 5.77600 5.90899 6.04166 6.16996 6.21410 6.42392 6.69996 6.76820 6.99754 7.11558 7.48211 8.37116 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.004147 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.446442 B = 6750.184288 C = 8487.457682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.479 4.479 8 H 0.070 0.930 9 C 0.098 3.902 10 C -0.194 4.194 11 C -0.117 4.117 12 C -0.243 4.243 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.069 4.069 16 C 0.521 3.479 17 O -0.574 6.574 18 N -0.695 5.695 19 C 0.134 3.866 20 H 0.075 0.925 21 C -0.154 4.154 22 H 0.125 0.875 23 C -0.152 4.152 24 C 0.055 3.945 25 O -0.369 6.369 26 C 0.086 3.914 27 H 0.115 0.885 28 C -0.104 4.104 29 C -0.123 4.123 30 C -0.127 4.127 31 C -0.102 4.102 32 H 0.285 0.715 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.410 0.590 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.526 -4.964 -5.875 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.509 4.509 8 H 0.088 0.912 9 C 0.096 3.904 10 C -0.213 4.213 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.109 4.109 16 C 0.309 3.691 17 O -0.452 6.452 18 N -0.347 5.347 19 C 0.028 3.972 20 H 0.093 0.907 21 C -0.174 4.174 22 H 0.143 0.857 23 C -0.190 4.190 24 C -0.022 4.022 25 O -0.288 6.288 26 C 0.028 3.972 27 H 0.133 0.867 28 C -0.105 4.105 29 C -0.161 4.161 30 C -0.165 4.165 31 C -0.139 4.139 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.248 0.752 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.190 -4.919 -5.243 20.493 hybrid contribution -0.480 1.152 0.181 1.261 sum 18.710 -3.767 -5.062 19.746 Atomic orbital electron populations 1.69882 1.08821 1.30172 1.36416 1.26648 0.95385 1.04107 0.91573 0.85430 0.79105 0.76826 0.79817 1.17794 1.19374 1.18978 1.19578 0.97056 0.91864 1.42388 0.91159 1.17710 0.91297 0.92755 0.88678 1.21295 1.00619 0.96772 1.02643 1.20946 0.99216 0.93393 1.00023 1.20700 1.01497 0.96778 1.07195 1.20723 0.95729 0.96588 0.97996 1.19517 1.00272 0.93527 1.05487 1.20257 0.89432 1.04207 0.96996 1.21051 0.85340 0.74151 0.88521 1.90651 1.87525 1.50291 1.16734 1.45532 1.03841 1.74879 1.10456 1.21647 0.84259 0.96237 0.95070 0.90689 1.24549 0.97891 0.94518 1.00401 0.85735 1.22827 1.00441 0.98895 0.96877 1.23495 0.99923 0.84229 0.94508 1.88921 1.71666 1.29819 1.38373 1.23784 0.95949 0.93628 0.83843 0.86749 1.22974 0.95597 0.93544 0.98381 1.22582 0.98267 0.96094 0.99124 1.22799 0.96473 1.00671 0.96530 1.22597 0.97554 0.96743 0.97055 0.90407 0.88542 0.87693 0.86737 0.86784 0.87485 0.88830 0.75235 0.90326 0.93083 0.90209 0.88944 0.90754 0.91086 0.89066 0.90477 0.89296 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.28 10.97 21.82 0.24 -44.04 16 2 C 0.04 1.92 5.16 85.26 0.44 2.36 16 3 Si 0.97 39.15 29.59 68.60 2.03 41.18 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.48 -26.12 8.14 23.46 0.19 -25.93 16 8 H 0.07 3.73 6.67 -2.91 -0.02 3.71 16 9 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 10 C -0.19 -10.92 8.68 22.73 0.20 -10.72 16 11 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 12 C -0.24 -11.32 10.05 22.46 0.23 -11.10 16 13 C -0.09 -4.28 9.66 22.22 0.21 -4.06 16 14 C -0.19 -9.19 4.43 -19.40 -0.09 -9.28 16 15 C -0.07 -2.77 5.18 29.10 0.15 -2.62 16 16 C 0.52 20.72 6.78 87.65 0.59 21.31 16 17 O -0.57 -28.45 15.63 -3.03 -0.05 -28.50 16 18 N -0.70 -21.00 3.40 -441.42 -1.50 -22.50 16 19 C 0.13 3.62 4.01 45.23 0.18 3.80 16 20 H 0.07 2.41 7.47 -2.39 -0.02 2.40 16 21 C -0.15 -3.56 5.09 -9.30 -0.05 -3.61 16 22 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 23 C -0.15 -3.97 6.27 31.57 0.20 -3.77 16 24 C 0.05 1.16 7.63 72.47 0.55 1.71 16 25 O -0.37 -8.11 9.70 -148.98 -1.44 -9.56 16 26 C 0.09 1.61 5.17 31.27 0.16 1.77 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 C -0.10 -1.99 0.83 -52.30 -0.04 -2.03 16 29 C -0.12 -2.22 7.34 30.91 0.23 -1.99 16 30 C -0.13 -1.69 8.08 31.22 0.25 -1.44 16 31 C -0.10 -1.49 7.84 30.90 0.24 -1.25 16 32 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 33 H 0.10 5.67 6.22 -2.91 -0.02 5.65 16 34 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.11 3.49 8.05 -2.39 -0.02 3.47 16 38 H 0.09 3.74 7.06 -2.39 -0.02 3.72 16 39 H 0.41 10.96 7.36 -92.71 -0.68 10.28 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.05 1.74 6.45 -2.39 -0.02 1.72 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -68.55 387.80 3.31 -65.24 By element: Atomic # 1 Polarization: 45.09 SS G_CDS: 0.28 Total: 45.37 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 3.76 Total: -47.20 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.26 Total: -66.55 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.49 Total: -38.05 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -68.55 3.31 -65.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776983839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.795 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds