Wall clock time and date at job start Sat Apr 11 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48504 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47276 * 300.00211 * 3 2 1 6 6 H 1.48497 * 109.47046 * 60.00254 * 3 2 1 7 7 C 1.39945 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 163.65634 * 7 2 1 9 9 C 1.41397 * 120.00246 * 343.64764 * 7 2 1 10 10 C 1.40726 * 120.24346 * 334.08341 * 9 7 2 11 11 C 1.37600 * 119.74727 * 179.97438 * 10 9 7 12 12 C 1.38664 * 120.24464 * 359.74390 * 11 10 9 13 13 C 1.38614 * 120.49855 * 0.51002 * 12 11 10 14 14 C 1.37630 * 120.25003 * 359.49172 * 13 12 11 15 15 C 1.50699 * 120.12937 * 180.27750 * 14 13 12 16 16 C 1.50703 * 109.47014 * 264.99850 * 15 14 13 17 17 O 1.21274 * 119.99842 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99737 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99832 * 179.97438 * 18 16 15 20 20 H 1.09002 * 112.82856 * 23.88134 * 19 18 16 21 21 C 1.53850 * 113.59164 * 252.66912 * 19 18 16 22 22 H 1.09005 * 116.27928 * 340.36411 * 21 19 18 23 23 C 1.56226 * 112.06410 * 118.47855 * 21 19 18 24 24 C 1.54441 * 104.29584 * 94.15558 * 23 21 19 25 25 O 1.44354 * 104.80947 * 334.89135 * 24 23 21 26 26 C 1.44265 * 105.50694 * 40.50260 * 25 24 23 27 27 H 1.08995 * 114.88719 * 90.24951 * 26 25 24 28 28 C 1.52828 * 113.68781 * 227.01187 * 26 25 24 29 29 C 1.52985 * 121.06295 * 207.57646 * 28 26 25 30 30 C 1.53929 * 86.81031 * 100.60435 * 29 28 26 31 31 C 1.52980 * 121.06507 * 315.89731 * 28 26 25 32 32 H 0.96997 * 119.99687 * 359.97438 * 1 2 3 33 33 H 1.08007 * 120.13072 * 359.94375 * 10 9 7 34 34 H 1.08000 * 119.88100 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.74493 * 180.25512 * 12 11 10 36 36 H 1.07996 * 119.87139 * 179.76781 * 13 12 11 37 37 H 1.09002 * 109.47040 * 24.99404 * 15 14 13 38 38 H 1.08999 * 109.47509 * 144.99725 * 15 14 13 39 39 H 0.96993 * 120.00415 * 0.02562 * 18 16 15 40 40 H 1.08999 * 111.05352 * 335.12857 * 23 21 19 41 41 H 1.08996 * 109.79198 * 212.56396 * 23 21 19 42 42 H 1.09003 * 110.37106 * 216.05816 * 24 23 21 43 43 H 1.09000 * 110.37053 * 93.72708 * 24 23 21 44 44 H 1.09000 * 113.65895 * 215.08548 * 29 28 26 45 45 H 1.09006 * 113.65394 * 346.12139 * 29 28 26 46 46 H 1.09006 * 113.58261 * 270.18712 * 30 29 28 47 47 H 1.08996 * 113.58607 * 139.38731 * 30 29 28 48 48 H 1.09001 * 113.65574 * 13.87581 * 31 28 26 49 49 H 1.08992 * 113.66032 * 144.82471 * 31 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0552 -1.2308 -0.2638 9 6 1.3438 -2.4119 0.3437 10 6 0.2127 -2.3811 1.1803 11 6 -0.4261 -3.5549 1.5083 12 6 0.0377 -4.7644 1.0135 13 6 1.1540 -4.8070 0.1929 14 6 1.8086 -3.6454 -0.1483 15 6 3.0183 -3.6944 -1.0457 16 6 4.2676 -3.7254 -0.2035 17 8 4.1839 -3.7089 1.0063 18 7 5.4779 -3.7716 -0.7948 19 6 6.6925 -3.8012 0.0240 20 1 6.5171 -4.1906 1.0268 21 6 7.4809 -2.4802 0.0039 22 1 7.2734 -1.8069 -0.8278 23 6 7.5857 -1.8377 1.4240 24 6 8.9341 -2.3502 1.9759 25 8 9.1757 -3.5861 1.2704 26 6 8.7697 -3.3385 -0.0916 27 1 9.5572 -2.9605 -0.7435 28 6 7.8892 -4.4405 -0.6799 29 6 7.8658 -4.7131 -2.1850 30 6 8.8097 -5.8948 -1.8987 31 6 8.2296 -5.9176 -0.4730 32 1 -0.4849 0.8400 0.0004 33 1 -0.1525 -1.4398 1.5639 34 1 -1.2941 -3.5338 2.1506 35 1 -0.4722 -5.6804 1.2728 36 1 1.5088 -5.7550 -0.1838 37 1 2.9753 -4.5904 -1.6649 38 1 3.0327 -2.8115 -1.6847 39 1 5.5449 -3.7844 -1.7623 40 1 6.7640 -2.1623 2.0623 41 1 7.5969 -0.7512 1.3377 42 1 8.8603 -2.5333 3.0479 43 1 9.7272 -1.6324 1.7665 44 1 6.8878 -5.0153 -2.5597 45 1 8.3229 -3.9222 -2.7799 46 1 9.8660 -5.6280 -1.9354 47 1 8.5780 -6.7884 -2.4781 48 1 8.9775 -6.0898 0.3009 49 1 7.3537 -6.5574 -0.3659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776983840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:36 Heat of formation + Delta-G solvation = -17.060208 kcal Electronic energy + Delta-G solvation = -30436.245311 eV Core-core repulsion = 26522.133523 eV Total energy + Delta-G solvation = -3914.111787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62185 -38.90998 -37.80991 -37.20502 -34.49079 -33.59177 -32.38773 -31.45641 -30.50302 -29.41977 -27.01288 -25.96860 -25.23155 -24.73347 -23.82268 -22.16472 -20.90904 -20.51722 -20.44969 -19.28024 -18.30110 -17.22753 -17.00122 -16.42003 -16.10427 -15.46023 -15.32067 -15.12093 -14.81520 -14.54996 -14.34490 -14.28425 -13.57015 -13.41615 -13.08437 -12.85311 -12.56923 -12.51771 -12.49561 -12.20674 -11.85127 -11.67933 -11.55234 -11.49210 -11.37047 -11.17033 -11.06684 -10.96497 -10.81393 -10.71166 -10.62191 -10.42408 -10.36789 -9.96226 -9.68184 -9.45271 -9.34089 -9.14962 -9.07934 -8.58226 -7.27841 -7.25730 -6.71287 -4.31378 2.79664 3.00075 3.07650 3.12309 3.28495 3.34239 3.44623 3.69094 3.94794 4.11008 4.30602 4.47723 4.60942 4.66696 4.68833 4.73515 4.93631 5.08523 5.12595 5.17360 5.29186 5.42411 5.47579 5.56002 5.59488 5.64836 5.70146 5.70846 5.81496 5.89423 5.94627 6.02104 6.06623 6.12485 6.19462 6.26387 6.28268 6.31873 6.46265 6.54329 6.72547 6.83454 6.89057 7.11519 7.32803 7.45524 7.67506 7.92865 8.00529 8.11329 8.16460 8.34704 8.68114 8.91332 8.94916 9.04862 10.23057 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.003729 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.034059 B = 7507.463539 C = 8843.726709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.179 4.179 15 C -0.072 4.072 16 C 0.516 3.484 17 O -0.519 6.519 18 N -0.733 5.733 19 C 0.156 3.844 20 H 0.117 0.883 21 C -0.149 4.149 22 H 0.113 0.887 23 C -0.149 4.149 24 C 0.049 3.951 25 O -0.356 6.356 26 C 0.075 3.925 27 H 0.092 0.908 28 C -0.109 4.109 29 C -0.113 4.113 30 C -0.138 4.138 31 C -0.120 4.120 32 H 0.278 0.722 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.394 0.606 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.682 -4.307 -4.872 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.258 4.258 13 C -0.100 4.100 14 C -0.181 4.181 15 C -0.111 4.111 16 C 0.304 3.696 17 O -0.393 6.393 18 N -0.386 5.386 19 C 0.050 3.950 20 H 0.135 0.865 21 C -0.169 4.169 22 H 0.131 0.869 23 C -0.187 4.187 24 C -0.027 4.027 25 O -0.275 6.275 26 C 0.016 3.984 27 H 0.109 0.891 28 C -0.111 4.111 29 C -0.151 4.151 30 C -0.175 4.175 31 C -0.158 4.158 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.229 0.771 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.464 -4.330 -3.881 17.460 hybrid contribution 0.264 1.125 -0.471 1.248 sum 16.727 -3.205 -4.352 17.579 Atomic orbital electron populations 1.69832 1.07447 1.28879 1.35993 1.25869 0.94671 1.01065 0.92409 0.86371 0.81024 0.81455 0.78525 1.18579 1.20072 1.19747 1.19492 0.97170 0.90936 1.40932 0.90779 1.17331 0.90743 0.91273 0.87972 1.21288 0.99050 0.96630 1.00891 1.20677 0.98681 0.93491 0.99751 1.20304 1.01466 0.96163 1.07913 1.20293 0.95893 0.95528 0.98272 1.19051 0.99245 0.94020 1.05822 1.20277 0.90691 1.02679 0.97484 1.21256 0.84377 0.74513 0.89490 1.90670 1.86742 1.47060 1.14779 1.46089 1.05376 1.77621 1.09556 1.22138 0.82495 0.93820 0.96554 0.86523 1.24897 0.96497 0.97264 0.98209 0.86908 1.23206 0.98408 1.01135 0.95929 1.23486 0.95668 0.86021 0.97562 1.88994 1.85724 1.33299 1.19501 1.23516 0.94179 0.95435 0.85246 0.89077 1.22943 0.95919 0.95335 0.96859 1.22574 1.00601 0.98615 0.93264 1.22813 0.99087 0.98371 0.97225 1.22633 1.01134 0.94810 0.97184 0.91075 0.86585 0.89623 0.89705 0.89818 0.90724 0.88649 0.77109 0.89516 0.90730 0.88915 0.92436 0.89139 0.91020 0.90268 0.91366 0.90768 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 10.97 55.55 0.61 -19.97 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.90 18.83 29.59 -169.99 -5.03 13.80 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -11.97 8.14 -37.74 -0.31 -12.28 16 8 H 0.07 1.90 6.68 -52.48 -0.35 1.55 16 9 C 0.13 3.46 5.56 -106.83 -0.59 2.87 16 10 C -0.16 -4.29 8.68 -38.88 -0.34 -4.63 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 14 C -0.18 -4.33 4.43 -103.92 -0.46 -4.80 16 15 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 16 C 0.52 9.95 7.46 -10.98 -0.08 9.87 16 17 O -0.52 -12.38 15.63 5.56 0.09 -12.29 16 18 N -0.73 -10.59 5.23 -53.45 -0.28 -10.87 16 19 C 0.16 2.14 3.43 -67.56 -0.23 1.91 16 20 H 0.12 1.97 7.20 -51.93 -0.37 1.60 16 21 C -0.15 -1.83 5.04 -87.32 -0.44 -2.27 16 22 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 23 C -0.15 -1.87 6.65 -24.24 -0.16 -2.03 16 24 C 0.05 0.53 7.63 37.91 0.29 0.82 16 25 O -0.36 -4.50 11.08 -35.23 -0.39 -4.89 16 26 C 0.07 0.82 5.11 -25.69 -0.13 0.69 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 C -0.11 -1.18 0.97 -154.70 -0.15 -1.33 16 29 C -0.11 -0.96 7.12 -26.25 -0.19 -1.15 16 30 C -0.14 -1.14 8.08 -25.77 -0.21 -1.35 16 31 C -0.12 -1.25 7.74 -26.25 -0.20 -1.46 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.12 3.21 6.22 -52.48 -0.33 2.89 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.10 1.82 7.06 -51.93 -0.37 1.46 16 39 H 0.39 4.50 7.02 -40.82 -0.29 4.22 16 40 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.74 7.03 -51.93 -0.36 0.37 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -30.97 390.91 -11.26 -42.23 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.52 Total: 12.28 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -4.62 Total: -26.18 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.33 Total: -30.84 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.30 Total: -17.18 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.97 -11.26 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776983840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.166 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds