Wall clock time and date at job start Sat Apr 11 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47414 * 2 1 4 4 O 1.45204 * 109.46982 * 239.99938 * 2 1 3 5 5 C 1.34227 * 117.00291 * 90.00166 * 4 2 1 6 6 O 1.20828 * 119.99424 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00445 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.50131 * 59.99718 * 7 5 4 9 9 C 1.53036 * 109.50350 * 180.02562 * 7 5 4 10 10 C 1.53033 * 109.54032 * 181.31442 * 9 7 5 11 11 C 1.53193 * 109.31667 * 298.63178 * 10 9 7 12 12 N 1.46931 * 108.77140 * 54.63606 * 11 10 9 13 13 C 1.34771 * 120.62908 * 126.43360 * 12 11 10 14 14 N 1.34779 * 120.00253 * 5.16548 * 13 12 11 15 15 O 1.21588 * 120.00232 * 185.16509 * 13 12 11 16 16 C 1.46931 * 118.76248 * 306.41291 * 12 11 10 17 17 C 1.50708 * 109.47179 * 120.00173 * 2 1 3 18 18 O 1.21277 * 119.99851 * 105.62388 * 17 2 1 19 19 N 1.34778 * 119.99536 * 285.62223 * 17 2 1 20 20 C 1.46495 * 120.00144 * 4.73727 * 19 17 2 21 21 C 1.46494 * 119.99594 * 184.73945 * 19 17 2 22 22 C 1.50700 * 109.47282 * 270.00274 * 21 19 17 23 23 H 1.08003 * 119.99794 * 359.97438 * 22 21 19 24 24 C 1.37878 * 120.00469 * 180.02562 * 22 21 19 25 25 N 1.31517 * 119.99668 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00334 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46870 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47062 * 239.99895 * 26 24 22 29 29 H 1.48503 * 109.46835 * 119.99850 * 26 24 22 30 30 H 1.08997 * 109.47821 * 173.51260 * 1 2 3 31 31 H 1.08998 * 109.46946 * 293.51361 * 1 2 3 32 32 H 1.09002 * 109.46977 * 53.51217 * 1 2 3 33 33 H 1.09006 * 109.45621 * 301.34046 * 9 7 5 34 34 H 1.09004 * 109.45892 * 61.30267 * 9 7 5 35 35 H 1.08997 * 109.49963 * 58.58877 * 10 9 7 36 36 H 1.09005 * 109.49629 * 178.68219 * 10 9 7 37 37 H 1.09001 * 109.58414 * 174.42422 * 11 10 9 38 38 H 1.08995 * 109.58418 * 294.85190 * 11 10 9 39 39 H 0.96998 * 119.99666 * 5.16482 * 14 13 12 40 40 H 0.96997 * 120.00105 * 185.16102 * 14 13 12 41 41 H 1.09002 * 109.56246 * 293.78208 * 16 12 11 42 42 H 1.09004 * 109.61457 * 173.35545 * 16 12 11 43 43 H 1.08998 * 109.47306 * 267.76652 * 20 19 17 44 44 H 1.09004 * 109.47060 * 27.76872 * 20 19 17 45 45 H 1.09006 * 109.46659 * 147.76421 * 20 19 17 46 46 H 1.09000 * 109.47049 * 149.99775 * 21 19 17 47 47 H 1.08999 * 109.47318 * 30.00019 * 21 19 17 48 48 H 0.97007 * 120.00080 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2171 0.0639 -2.2812 6 8 1.9982 1.2518 -2.2503 7 6 2.7181 -0.5773 -3.5495 8 1 2.0089 -1.3371 -3.8779 9 6 2.8638 0.4887 -4.6379 10 6 3.3412 -0.1668 -5.9357 11 6 4.7116 -0.8111 -5.7036 12 7 4.6141 -1.7320 -4.5628 13 6 5.0065 -3.0158 -4.6813 14 7 5.5899 -3.4399 -5.8198 15 8 4.8343 -3.7916 -3.7610 16 6 4.0811 -1.2270 -3.2902 17 6 2.0323 -0.7105 1.2305 18 8 2.5011 -1.8251 1.1381 19 7 1.9606 -0.1070 2.4335 20 6 1.3009 1.1947 2.5618 21 6 2.5423 -0.7528 3.6127 22 6 1.5049 -1.6261 4.2702 23 1 0.5115 -1.6930 3.8518 24 6 1.8236 -2.3389 5.4066 25 7 3.0332 -2.2571 5.9164 26 14 0.5376 -3.4208 6.2220 27 1 -0.7334 -3.3404 5.4581 28 1 0.3096 -2.9556 7.6137 29 1 1.0144 -4.8271 6.2420 30 1 -0.3634 -1.0210 -0.1161 31 1 -0.3633 0.4100 0.9423 32 1 -0.3633 0.6111 -0.8262 33 1 1.9000 0.9691 -4.8068 34 1 3.5910 1.2357 -4.3195 35 1 2.6269 -0.9312 -6.2414 36 1 3.4223 0.5892 -6.7167 37 1 5.0113 -1.3632 -6.5944 38 1 5.4473 -0.0368 -5.4863 39 1 5.7955 -2.8060 -6.5247 40 1 5.8042 -4.3789 -5.9344 41 1 4.7657 -0.4869 -2.8757 42 1 3.9644 -2.0531 -2.5887 43 1 2.0392 1.9888 2.4499 44 1 0.5400 1.2943 1.7877 45 1 0.8327 1.2695 3.5433 46 1 2.8752 0.0093 4.3173 47 1 3.3925 -1.3639 3.3100 48 1 3.7010 -1.6950 5.4932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792276874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:50 Heat of formation + Delta-G solvation = -141.537260 kcal Electronic energy + Delta-G solvation = -30804.006140 eV Core-core repulsion = 26473.647360 eV Total energy + Delta-G solvation = -4330.358780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17068 -40.35817 -39.09387 -37.67064 -36.43268 -35.00797 -34.35202 -33.11813 -32.75529 -32.06224 -31.21721 -27.40642 -26.21690 -25.87821 -25.21284 -23.98071 -22.84108 -22.00046 -20.63343 -19.89411 -19.07593 -18.79763 -17.91582 -17.20253 -16.90908 -16.79768 -16.33270 -15.96000 -15.48300 -15.31300 -15.12341 -14.83655 -14.58927 -14.56019 -13.85340 -13.75151 -13.66343 -13.47850 -13.36697 -13.06344 -12.94606 -12.55270 -12.30255 -12.15323 -11.91434 -11.69358 -11.55983 -11.44663 -11.42112 -11.20789 -11.04232 -10.90091 -10.75707 -10.62148 -10.54710 -10.39493 -10.11194 -9.97689 -9.13682 -9.01944 -8.97301 -8.36901 -7.68131 -6.37594 -4.09604 1.96126 2.30742 2.53258 2.92593 3.19297 3.45112 3.51040 3.63084 3.72192 3.80662 4.18866 4.30676 4.38742 4.48941 4.54742 4.61955 4.75716 4.82985 4.90556 4.96327 5.05858 5.09465 5.27878 5.33539 5.37030 5.37995 5.39313 5.52568 5.60908 5.67615 5.72121 5.79851 5.83201 5.99931 6.02137 6.20591 6.35343 6.40243 6.61215 6.75809 7.08505 7.31772 7.51615 7.61580 8.02709 8.17515 8.33419 8.43491 8.77103 8.90791 9.59892 11.00043 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002635 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.516665 B =10621.913499 C =11900.779421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.321 6.321 5 C 0.469 3.531 6 O -0.507 6.507 7 C -0.093 4.093 8 H 0.115 0.885 9 C -0.104 4.104 10 C -0.133 4.133 11 C 0.107 3.893 12 N -0.628 5.628 13 C 0.708 3.292 14 N -0.868 5.868 15 O -0.579 6.579 16 C 0.137 3.863 17 C 0.507 3.493 18 O -0.513 6.513 19 N -0.593 5.593 20 C 0.068 3.932 21 C 0.237 3.763 22 C -0.605 4.605 23 H 0.053 0.947 24 C 0.019 3.981 25 N -0.910 5.910 26 Si 1.078 2.922 27 H -0.290 1.290 28 H -0.287 1.287 29 H -0.285 1.285 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.414 0.586 41 H 0.074 0.926 42 H 0.115 0.885 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.025 0.975 47 H 0.034 0.966 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 8.819 -28.124 29.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.236 6.236 5 C 0.311 3.689 6 O -0.395 6.395 7 C -0.114 4.114 8 H 0.133 0.867 9 C -0.142 4.142 10 C -0.172 4.172 11 C -0.016 4.016 12 N -0.366 5.366 13 C 0.407 3.593 14 N -0.439 5.439 15 O -0.456 6.456 16 C 0.013 3.987 17 C 0.291 3.709 18 O -0.387 6.387 19 N -0.327 5.327 20 C -0.076 4.076 21 C 0.118 3.882 22 C -0.644 4.644 23 H 0.071 0.929 24 C -0.185 4.185 25 N -0.546 5.546 26 Si 0.906 3.094 27 H -0.216 1.216 28 H -0.213 1.213 29 H -0.212 1.212 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.225 0.775 40 H 0.247 0.753 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.584 7.134 -26.116 27.080 hybrid contribution 0.282 1.290 -1.695 2.148 sum 0.865 8.424 -27.811 29.072 Atomic orbital electron populations 1.22297 0.92230 1.04287 1.03944 1.22643 0.96011 0.97278 0.82793 0.87885 1.86666 1.76069 1.41344 1.19488 1.23495 0.74290 0.85764 0.85390 1.90641 1.48324 1.16404 1.84158 1.21443 0.99694 0.99769 0.90459 0.86731 1.21439 1.03425 0.96505 0.92809 1.21936 0.96784 1.00683 0.97755 1.21727 0.98002 0.93302 0.88582 1.47182 1.67384 1.09086 1.12995 1.15861 0.78370 0.81911 0.83134 1.43142 1.68084 1.13675 1.18989 1.91051 1.61609 1.53599 1.39307 1.21399 0.91380 1.00455 0.85438 1.19796 0.80720 0.86653 0.83766 1.90733 1.44515 1.18048 1.85444 1.47863 1.56528 1.20011 1.08310 1.21973 0.97090 0.84894 1.03597 1.19399 0.94983 0.92808 0.81040 1.22279 0.98863 1.30095 1.13185 0.92869 1.25826 1.00091 0.97567 0.95004 1.70747 1.03534 1.38588 1.41763 0.83420 0.74257 0.76239 0.75476 1.21579 1.21319 1.21165 0.90529 0.89106 0.91167 0.90284 0.90476 0.91000 0.89761 0.90123 0.90864 0.77532 0.75346 0.90820 0.86647 0.93404 0.91405 0.90308 0.95716 0.94806 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.16 37.15 0.34 -2.06 16 2 C 0.07 1.20 2.16 -27.88 -0.06 1.14 16 3 H 0.10 1.59 6.70 -51.93 -0.35 1.24 16 4 O -0.32 -5.41 9.39 -45.77 -0.43 -5.84 16 5 C 0.47 6.42 7.23 36.00 0.26 6.68 16 6 O -0.51 -7.43 15.20 -18.75 -0.29 -7.72 16 7 C -0.09 -0.96 2.78 -91.65 -0.25 -1.22 16 8 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 9 C -0.10 -0.78 4.46 -26.70 -0.12 -0.89 16 10 C -0.13 -0.64 6.08 -26.61 -0.16 -0.80 16 11 C 0.11 0.53 6.35 -3.71 -0.02 0.51 16 12 N -0.63 -5.83 2.97 -178.49 -0.53 -6.36 16 13 C 0.71 8.09 8.57 -86.92 -0.74 7.35 16 14 N -0.87 -5.59 8.74 27.63 0.24 -5.35 16 15 O -0.58 -9.91 16.60 5.29 0.09 -9.82 16 16 C 0.14 1.57 5.65 -3.71 -0.02 1.55 16 17 C 0.51 11.16 7.00 -10.98 -0.08 11.09 16 18 O -0.51 -13.79 16.19 -13.65 -0.22 -14.01 16 19 N -0.59 -12.94 2.86 -182.96 -0.52 -13.47 16 20 C 0.07 1.09 9.88 59.84 0.59 1.69 16 21 C 0.24 6.27 4.45 -5.20 -0.02 6.25 16 22 C -0.61 -17.58 9.39 -34.44 -0.32 -17.90 16 23 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 24 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 25 N -0.91 -28.14 13.65 55.43 0.76 -27.38 16 26 Si 1.08 26.16 29.90 -169.99 -5.08 21.07 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.20 5.51 -51.93 -0.29 0.91 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.20 5.74 -51.93 -0.30 -0.10 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.39 1.21 6.42 -40.82 -0.26 0.95 16 40 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.12 1.74 7.00 -51.93 -0.36 1.37 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.90 4.18 -51.93 -0.22 0.69 16 45 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 46 H 0.02 0.65 7.94 -51.93 -0.41 0.23 16 47 H 0.03 1.00 7.36 -51.93 -0.38 0.62 16 48 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -40.05 389.65 -7.90 -47.96 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.08 Total: 1.20 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: -0.71 Total: 13.84 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.06 Total: -52.56 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.85 Total: -37.39 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.05 -7.90 -47.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792276874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.579 kcal (2) G-P(sol) polarization free energy of solvation -40.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds