Wall clock time and date at job start Sat Apr 11 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47414 * 2 1 4 4 O 1.45204 * 109.46982 * 239.99938 * 2 1 3 5 5 C 1.34227 * 117.00291 * 90.00166 * 4 2 1 6 6 O 1.20828 * 119.99424 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00445 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.50131 * 59.99718 * 7 5 4 9 9 C 1.53036 * 109.50350 * 180.02562 * 7 5 4 10 10 C 1.53033 * 109.54032 * 181.31442 * 9 7 5 11 11 C 1.53193 * 109.31667 * 298.63178 * 10 9 7 12 12 N 1.46931 * 108.77140 * 54.63606 * 11 10 9 13 13 C 1.34771 * 120.62908 * 126.43360 * 12 11 10 14 14 N 1.34779 * 120.00253 * 5.16548 * 13 12 11 15 15 O 1.21588 * 120.00232 * 185.16509 * 13 12 11 16 16 C 1.46931 * 118.76248 * 306.41291 * 12 11 10 17 17 C 1.50708 * 109.47179 * 120.00173 * 2 1 3 18 18 O 1.21277 * 119.99851 * 105.62388 * 17 2 1 19 19 N 1.34778 * 119.99536 * 285.62223 * 17 2 1 20 20 C 1.46495 * 120.00144 * 4.73727 * 19 17 2 21 21 C 1.46494 * 119.99594 * 184.73945 * 19 17 2 22 22 C 1.50700 * 109.47282 * 270.00274 * 21 19 17 23 23 H 1.08003 * 119.99794 * 359.97438 * 22 21 19 24 24 C 1.37878 * 120.00469 * 180.02562 * 22 21 19 25 25 N 1.31517 * 119.99668 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00334 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46870 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47062 * 239.99895 * 26 24 22 29 29 H 1.48503 * 109.46835 * 119.99850 * 26 24 22 30 30 H 1.08997 * 109.47821 * 173.51260 * 1 2 3 31 31 H 1.08998 * 109.46946 * 293.51361 * 1 2 3 32 32 H 1.09002 * 109.46977 * 53.51217 * 1 2 3 33 33 H 1.09006 * 109.45621 * 301.34046 * 9 7 5 34 34 H 1.09004 * 109.45892 * 61.30267 * 9 7 5 35 35 H 1.08997 * 109.49963 * 58.58877 * 10 9 7 36 36 H 1.09005 * 109.49629 * 178.68219 * 10 9 7 37 37 H 1.09001 * 109.58414 * 174.42422 * 11 10 9 38 38 H 1.08995 * 109.58418 * 294.85190 * 11 10 9 39 39 H 0.96998 * 119.99666 * 5.16482 * 14 13 12 40 40 H 0.96997 * 120.00105 * 185.16102 * 14 13 12 41 41 H 1.09002 * 109.56246 * 293.78208 * 16 12 11 42 42 H 1.09004 * 109.61457 * 173.35545 * 16 12 11 43 43 H 1.08998 * 109.47306 * 267.76652 * 20 19 17 44 44 H 1.09004 * 109.47060 * 27.76872 * 20 19 17 45 45 H 1.09006 * 109.46659 * 147.76421 * 20 19 17 46 46 H 1.09000 * 109.47049 * 149.99775 * 21 19 17 47 47 H 1.08999 * 109.47318 * 30.00019 * 21 19 17 48 48 H 0.97007 * 120.00080 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2171 0.0639 -2.2812 6 8 1.9982 1.2518 -2.2503 7 6 2.7181 -0.5773 -3.5495 8 1 2.0089 -1.3371 -3.8779 9 6 2.8638 0.4887 -4.6379 10 6 3.3412 -0.1668 -5.9357 11 6 4.7116 -0.8111 -5.7036 12 7 4.6141 -1.7320 -4.5628 13 6 5.0065 -3.0158 -4.6813 14 7 5.5899 -3.4399 -5.8198 15 8 4.8343 -3.7916 -3.7610 16 6 4.0811 -1.2270 -3.2902 17 6 2.0323 -0.7105 1.2305 18 8 2.5011 -1.8251 1.1381 19 7 1.9606 -0.1070 2.4335 20 6 1.3009 1.1947 2.5618 21 6 2.5423 -0.7528 3.6127 22 6 1.5049 -1.6261 4.2702 23 1 0.5115 -1.6930 3.8518 24 6 1.8236 -2.3389 5.4066 25 7 3.0332 -2.2571 5.9164 26 14 0.5376 -3.4208 6.2220 27 1 -0.7334 -3.3404 5.4581 28 1 0.3096 -2.9556 7.6137 29 1 1.0144 -4.8271 6.2420 30 1 -0.3634 -1.0210 -0.1161 31 1 -0.3633 0.4100 0.9423 32 1 -0.3633 0.6111 -0.8262 33 1 1.9000 0.9691 -4.8068 34 1 3.5910 1.2357 -4.3195 35 1 2.6269 -0.9312 -6.2414 36 1 3.4223 0.5892 -6.7167 37 1 5.0113 -1.3632 -6.5944 38 1 5.4473 -0.0368 -5.4863 39 1 5.7955 -2.8060 -6.5247 40 1 5.8042 -4.3789 -5.9344 41 1 4.7657 -0.4869 -2.8757 42 1 3.9644 -2.0531 -2.5887 43 1 2.0392 1.9888 2.4499 44 1 0.5400 1.2943 1.7877 45 1 0.8327 1.2695 3.5433 46 1 2.8752 0.0093 4.3173 47 1 3.3925 -1.3639 3.3100 48 1 3.7010 -1.6950 5.4932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792276874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:49 Heat of formation + Delta-G solvation = -171.537620 kcal Electronic energy + Delta-G solvation = -30805.307053 eV Core-core repulsion = 26473.647360 eV Total energy + Delta-G solvation = -4331.659694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25823 -41.36183 -40.65968 -38.59960 -37.63538 -36.88700 -35.23777 -35.12694 -33.48431 -33.22157 -32.18166 -29.31859 -27.75393 -26.59465 -26.29447 -25.59271 -24.34576 -22.93905 -21.65860 -20.71730 -20.62481 -19.55663 -19.10502 -18.99402 -18.24316 -17.98322 -17.50158 -17.33557 -16.74410 -16.54527 -16.28389 -15.83960 -15.70969 -15.56950 -15.39813 -14.92026 -14.84670 -14.58936 -14.41913 -14.26266 -14.07439 -13.85591 -13.74870 -13.64922 -13.50790 -13.16285 -12.94787 -12.67095 -12.57367 -12.42886 -12.11304 -12.07652 -11.98771 -11.97162 -11.78377 -11.67086 -11.35190 -11.23319 -10.76469 -10.74774 -10.63930 -9.73972 -9.59801 -8.72646 -6.47958 0.86836 1.17293 1.46180 1.50393 1.58858 1.69320 1.75038 2.05162 2.24859 2.51752 3.07273 3.17992 3.27642 3.37924 3.55504 3.61797 3.66802 3.75692 3.95162 4.00646 4.05547 4.11142 4.45181 4.47068 4.49008 4.50486 4.53715 4.64874 4.65914 4.68168 4.76229 4.83444 4.85832 4.98487 5.03527 5.08705 5.19709 5.32512 5.38816 5.42988 5.75856 5.76860 5.96834 6.09558 6.38735 6.42662 6.52773 6.86967 7.11489 7.32034 7.56239 8.63131 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002635 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.516665 B =10621.913499 C =11900.779421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 H 0.124 0.876 4 O -0.346 6.346 5 C 0.469 3.531 6 O -0.512 6.512 7 C -0.085 4.085 8 H 0.118 0.882 9 C -0.099 4.099 10 C -0.125 4.125 11 C 0.099 3.901 12 N -0.623 5.623 13 C 0.699 3.301 14 N -0.843 5.843 15 O -0.647 6.647 16 C 0.139 3.861 17 C 0.497 3.503 18 O -0.577 6.577 19 N -0.598 5.598 20 C 0.061 3.939 21 C 0.246 3.754 22 C -0.615 4.615 23 H 0.047 0.953 24 C -0.032 4.032 25 N -0.932 5.932 26 Si 1.124 2.876 27 H -0.273 1.273 28 H -0.267 1.267 29 H -0.284 1.284 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.028 0.972 47 H -0.009 1.009 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 10.946 -30.955 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.142 0.858 4 O -0.262 6.262 5 C 0.312 3.688 6 O -0.401 6.401 7 C -0.105 4.105 8 H 0.136 0.864 9 C -0.137 4.137 10 C -0.163 4.163 11 C -0.022 4.022 12 N -0.361 5.361 13 C 0.398 3.602 14 N -0.414 5.414 15 O -0.529 6.529 16 C 0.014 3.986 17 C 0.284 3.716 18 O -0.456 6.456 19 N -0.330 5.330 20 C -0.080 4.080 21 C 0.124 3.876 22 C -0.654 4.654 23 H 0.065 0.935 24 C -0.230 4.230 25 N -0.569 5.569 26 Si 0.945 3.055 27 H -0.198 1.198 28 H -0.192 1.192 29 H -0.210 1.210 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.248 0.752 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.046 0.954 47 H 0.009 0.991 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.788 9.373 -29.039 30.524 hybrid contribution 0.782 0.698 -0.899 1.381 sum -0.005 10.071 -29.938 31.586 Atomic orbital electron populations 1.22306 0.89701 1.04300 1.05755 1.22530 0.97628 0.96830 0.80698 0.85819 1.86694 1.76642 1.42650 1.20228 1.24132 0.73724 0.85721 0.85270 1.90620 1.48683 1.16542 1.84206 1.21548 0.98582 1.00729 0.89618 0.86408 1.21492 1.03847 0.95530 0.92829 1.21943 0.96198 1.01306 0.96862 1.22131 0.98915 0.93271 0.87866 1.47189 1.66471 1.09072 1.13358 1.16172 0.78495 0.82059 0.83427 1.42876 1.66277 1.14490 1.17790 1.91009 1.64314 1.55627 1.41958 1.21143 0.92520 0.98840 0.86065 1.20793 0.79438 0.86143 0.85240 1.90695 1.47297 1.21066 1.86552 1.47904 1.56335 1.21673 1.07096 1.22322 0.98405 0.82518 1.04798 1.18969 0.93474 0.92456 0.82664 1.22548 0.98952 1.30537 1.13334 0.93464 1.27390 1.01186 0.98546 0.95913 1.70869 1.04233 1.39389 1.42368 0.82851 0.72415 0.74438 0.75783 1.19813 1.19171 1.21034 0.91793 0.87950 0.88214 0.89888 0.90502 0.90937 0.86532 0.86976 0.89387 0.75177 0.74666 0.90595 0.91265 0.90630 0.88060 0.90511 0.95382 0.99075 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.16 71.98 0.66 -3.66 16 2 C 0.08 2.71 2.16 29.85 0.06 2.77 16 3 H 0.12 3.58 6.70 -2.39 -0.02 3.56 16 4 O -0.35 -11.94 9.39 -45.15 -0.42 -12.37 16 5 C 0.47 12.60 7.23 71.23 0.52 13.11 16 6 O -0.51 -14.06 15.20 21.96 0.33 -13.72 16 7 C -0.08 -1.70 2.78 -11.46 -0.03 -1.73 16 8 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 9 C -0.10 -1.22 4.46 30.62 0.14 -1.08 16 10 C -0.13 -0.72 6.08 30.67 0.19 -0.53 16 11 C 0.10 0.66 6.35 86.36 0.55 1.21 16 12 N -0.62 -11.13 2.97 -836.87 -2.49 -13.62 16 13 C 0.70 16.07 8.57 179.06 1.53 17.61 16 14 N -0.84 -9.56 8.74 -184.75 -1.61 -11.17 16 15 O -0.65 -23.66 16.60 -3.99 -0.07 -23.72 16 16 C 0.14 3.31 5.65 86.36 0.49 3.80 16 17 C 0.50 22.62 7.00 87.66 0.61 23.24 16 18 O -0.58 -33.10 16.19 15.35 0.25 -32.85 16 19 N -0.60 -26.53 2.86 -851.14 -2.43 -28.96 16 20 C 0.06 1.86 9.88 127.77 1.26 3.12 16 21 C 0.25 13.58 4.45 85.63 0.38 13.96 16 22 C -0.62 -36.68 9.39 25.60 0.24 -36.44 16 23 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 24 C -0.03 -1.93 5.46 84.65 0.46 -1.47 16 25 N -0.93 -59.20 13.65 21.45 0.29 -58.91 16 26 Si 1.12 52.72 29.90 68.60 2.05 54.77 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 29 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.43 5.51 -2.39 -0.01 2.41 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.00 8.07 -2.38 -0.02 0.98 16 34 H 0.08 0.98 8.13 -2.38 -0.02 0.96 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.11 0.04 5.74 -2.39 -0.01 0.03 16 38 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.41 1.26 6.42 -92.71 -0.60 0.67 16 40 H 0.42 4.23 8.93 -92.71 -0.83 3.41 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 2.32 7.00 -2.38 -0.02 2.31 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 2.40 4.18 -2.38 -0.01 2.39 16 45 H 0.08 2.40 8.09 -2.38 -0.02 2.38 16 46 H 0.03 1.52 7.94 -2.39 -0.02 1.50 16 47 H -0.01 -0.56 7.36 -2.39 -0.02 -0.57 16 48 H 0.26 16.42 7.22 -92.70 -0.67 15.75 16 Total: -1.00 -94.76 389.65 2.65 -92.11 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.31 Total: 14.53 kcal Atomic # 6 Polarization: 26.85 SS G_CDS: 7.06 Total: 33.91 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -6.24 Total: -112.66 kcal Atomic # 8 Polarization: -82.76 SS G_CDS: 0.09 Total: -82.66 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 2.05 Total: 54.77 kcal Total: -94.76 2.65 -92.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792276874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.428 kcal (2) G-P(sol) polarization free energy of solvation -94.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds