Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39701 * 120.42827 * 308.68849 * 3 2 1 5 5 C 1.38935 * 118.99801 * 180.02562 * 4 3 2 6 6 C 1.36350 * 119.68513 * 359.94156 * 5 4 3 7 7 N 1.35262 * 121.68474 * 0.34351 * 6 5 4 8 8 C 1.46500 * 119.52943 * 179.69739 * 7 6 5 9 9 N 1.46899 * 109.46874 * 269.72873 * 8 7 6 10 10 C 1.46847 * 110.99862 * 155.00258 * 9 8 7 11 11 C 1.53044 * 109.51335 * 174.15436 * 10 9 8 12 12 C 1.53119 * 109.27589 * 59.18419 * 11 10 9 13 13 C 1.50703 * 109.51728 * 182.37636 * 12 11 10 14 14 H 1.08001 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99699 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99840 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47033 * 60.00186 * 17 15 13 19 19 H 1.48497 * 109.46737 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46985 * 299.99870 * 17 15 13 21 21 C 1.53120 * 109.16202 * 302.34077 * 12 11 10 22 22 C 1.46847 * 110.99299 * 30.79417 * 9 8 7 23 23 C 1.34668 * 120.93699 * 359.42110 * 7 6 5 24 24 O 1.21907 * 120.22181 * 180.48724 * 23 7 6 25 25 C 1.50642 * 122.26435 * 180.35178 * 5 4 3 26 26 C 1.52755 * 110.49496 * 342.17479 * 25 5 4 27 27 C 1.53291 * 108.51895 * 51.38318 * 26 25 5 28 28 C 1.50451 * 118.32282 * 359.81272 * 4 3 2 29 29 H 1.07995 * 119.15640 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47046 * 149.72878 * 8 7 6 31 31 H 1.09000 * 109.47053 * 29.72910 * 8 7 6 32 32 H 1.09002 * 109.46448 * 54.14158 * 10 9 8 33 33 H 1.08994 * 109.45958 * 294.16523 * 10 9 8 34 34 H 1.09000 * 109.49745 * 179.12223 * 11 10 9 35 35 H 1.08996 * 109.50070 * 299.23917 * 11 10 9 36 36 H 1.08993 * 109.52284 * 62.25342 * 12 11 10 37 37 H 0.97004 * 119.99580 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.50328 * 177.59853 * 21 12 11 39 39 H 1.08996 * 109.50004 * 297.72216 * 21 12 11 40 40 H 1.09005 * 109.46836 * 65.83946 * 22 9 8 41 41 H 1.08995 * 109.45748 * 305.85482 * 22 9 8 42 42 H 1.08996 * 109.27174 * 221.91039 * 25 5 4 43 43 H 1.09001 * 109.24306 * 102.41578 * 25 5 4 44 44 H 1.09005 * 109.62977 * 291.67372 * 26 25 5 45 45 H 1.08998 * 109.79283 * 171.19111 * 26 25 5 46 46 H 1.09000 * 109.64764 * 170.10918 * 27 26 25 47 47 H 1.09004 * 109.64242 * 49.48354 * 27 26 25 48 48 H 1.09000 * 109.30698 * 283.00996 * 28 4 3 49 49 H 1.09003 * 109.30059 * 42.38602 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -0.7520 0.9403 5 6 4.6648 -0.7293 0.9135 6 6 5.3100 0.0212 -0.0244 7 7 4.6321 0.7571 -0.9346 8 6 5.3733 1.5517 -1.9172 9 7 5.6153 2.8963 -1.3774 10 6 6.7961 3.5085 -1.9997 11 6 6.9323 4.9564 -1.5231 12 6 7.0680 4.9759 0.0020 13 6 7.1439 6.4023 0.4825 14 1 7.0995 7.2146 -0.2279 15 6 7.2690 6.6703 1.8292 16 7 7.3226 5.6812 2.6942 17 14 7.3638 8.4383 2.4248 18 1 6.1287 9.1610 2.0284 19 1 7.4952 8.4559 3.9038 20 1 8.5436 9.1032 1.8155 21 6 5.8488 4.2893 0.6238 22 6 5.7440 2.8607 0.0850 23 6 3.2856 0.7655 -0.9539 24 8 2.6879 1.4266 -1.7857 25 6 5.5009 -1.5184 1.8869 26 6 4.6643 -1.9353 3.0952 27 6 3.3859 -2.6147 2.5912 28 6 2.4958 -1.5530 1.9469 29 1 6.3898 0.0323 -0.0376 30 1 4.7916 1.6282 -2.8359 31 1 6.3269 1.0686 -2.1302 32 1 6.6850 3.4919 -3.0839 33 1 7.6872 2.9478 -1.7174 34 1 7.8176 5.4058 -1.9730 35 1 6.0476 5.5210 -1.8171 36 1 7.9737 4.4446 0.2939 37 1 7.4110 5.8697 3.6417 38 1 5.9600 4.2622 1.7078 39 1 4.9470 4.8435 0.3636 40 1 6.6402 2.3032 0.3574 41 1 4.8686 2.3739 0.5148 42 1 6.3371 -0.9052 2.2226 43 1 5.8849 -2.4096 1.3906 44 1 4.4039 -1.0542 3.6818 45 1 5.2303 -2.6324 3.7131 46 1 2.8606 -3.0742 3.4285 47 1 3.6416 -3.3752 1.8534 48 1 2.1134 -0.8862 2.7197 49 1 1.6575 -2.0398 1.4484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793510970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 24.112045 kcal Electronic energy + Delta-G solvation = -30479.978046 eV Core-core repulsion = 26599.944373 eV Total energy + Delta-G solvation = -3880.033673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95071 -38.91639 -38.15925 -36.81008 -35.99042 -34.15643 -33.07870 -32.22650 -30.88615 -29.99256 -28.78696 -27.15068 -25.39786 -24.63877 -23.53508 -22.99511 -22.24687 -21.45303 -19.98135 -18.91991 -18.63959 -18.00376 -16.96672 -16.60662 -16.31111 -15.96309 -15.18407 -14.88381 -14.58094 -14.42643 -14.24412 -14.14024 -13.81312 -13.69327 -13.28395 -13.25335 -13.14282 -13.00286 -12.86997 -12.70989 -12.52526 -12.35849 -12.26250 -12.09249 -11.86045 -11.31899 -11.13494 -11.05200 -10.98318 -10.91138 -10.83777 -10.57862 -10.34445 -10.12814 -10.01589 -9.84989 -9.54178 -9.06758 -8.81047 -8.34812 -8.16694 -7.88968 -6.02695 -4.07487 0.14950 1.61014 2.21393 2.78128 2.88287 3.30874 3.35328 3.38820 3.69753 3.89178 4.08802 4.19689 4.22835 4.41387 4.42503 4.49562 4.56114 4.71544 4.82211 4.96640 5.15037 5.21440 5.22609 5.27939 5.32792 5.42515 5.48437 5.50523 5.59245 5.61697 5.63457 5.75525 5.83520 5.86913 5.92460 5.97323 6.00284 6.12040 6.20369 6.41576 6.49523 6.72554 6.77509 6.94375 7.00243 7.25459 7.41748 7.45446 7.61441 7.72772 7.90071 7.96029 8.06411 8.42066 8.95388 9.57366 11.03693 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.003282 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.247805 B = 8530.440217 C = 9214.654650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.287 3.713 3 C -0.189 4.189 4 C 0.106 3.894 5 C -0.202 4.202 6 C 0.183 3.817 7 N -0.487 5.487 8 C 0.259 3.741 9 N -0.541 5.541 10 C 0.063 3.937 11 C -0.107 4.107 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.102 4.102 22 C 0.053 3.947 23 C 0.544 3.456 24 O -0.520 6.520 25 C -0.059 4.059 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.102 4.102 29 H 0.167 0.833 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.021 0.979 37 H 0.260 0.740 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -20.318 -1.384 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.027 4.027 3 C -0.197 4.197 4 C 0.098 3.902 5 C -0.207 4.207 6 C 0.051 3.949 7 N -0.194 5.194 8 C 0.049 3.951 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.145 4.145 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.141 4.141 22 C -0.074 4.074 23 C 0.343 3.657 24 O -0.399 6.399 25 C -0.097 4.097 26 C -0.160 4.160 27 C -0.155 4.155 28 C -0.139 4.139 29 H 0.185 0.815 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.114 0.886 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.186 -19.549 -1.950 19.768 hybrid contribution 1.245 0.616 0.560 1.498 sum -0.941 -18.934 -1.390 19.008 Atomic orbital electron populations 1.81186 1.11600 1.09116 1.08657 1.24624 0.91529 0.93279 0.93283 1.16721 0.86216 1.11507 1.05263 1.20235 0.92754 0.87540 0.89654 1.18831 0.92420 1.07170 1.02286 1.22306 0.99004 0.87097 0.86543 1.45553 1.08328 1.37351 1.28205 1.22825 0.95027 0.86082 0.91133 1.62439 1.40729 1.16342 1.07309 1.22176 0.88747 0.97709 0.97774 1.21690 1.00685 0.92231 0.99848 1.18675 0.93737 0.95963 0.88525 1.21156 1.49802 0.92008 0.92056 0.92744 1.24944 0.95056 0.96921 0.96926 1.69843 1.50624 1.30670 1.02045 0.86690 0.78638 0.85388 0.77497 1.20267 1.21335 1.20341 1.21666 0.99535 0.90071 1.02802 1.22399 0.97953 1.01670 0.85422 1.16428 0.80528 0.82954 0.85791 1.90984 1.66319 1.43329 1.39246 1.20211 0.96947 0.98784 0.93772 1.21571 0.96113 1.01088 0.97214 1.21567 0.96073 0.97268 1.00578 1.20791 0.98094 0.97728 0.97278 0.81539 0.86861 0.91738 0.91766 0.95249 0.92709 0.92182 0.96092 0.93021 0.88722 0.93679 0.95735 0.92751 0.90175 0.90639 0.91043 0.90864 0.90869 0.91148 0.88559 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.31 18.54 41.84 0.78 -6.53 16 2 C 0.29 4.46 13.46 -22.47 -0.30 4.16 16 3 C -0.19 -2.57 5.80 -106.08 -0.62 -3.19 16 4 C 0.11 1.06 5.79 -103.94 -0.60 0.46 16 5 C -0.20 -1.71 5.70 -105.07 -0.60 -2.31 16 6 C 0.18 1.67 7.66 -16.72 -0.13 1.55 16 7 N -0.49 -6.03 1.58 -122.55 -0.19 -6.22 16 8 C 0.26 3.26 5.84 -63.32 -0.37 2.89 16 9 N -0.54 -8.83 4.91 -238.57 -1.17 -10.00 16 10 C 0.06 1.00 5.30 -3.83 -0.02 0.98 16 11 C -0.11 -2.09 5.32 -26.65 -0.14 -2.24 16 12 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 13 C -0.51 -13.67 8.57 -34.44 -0.29 -13.96 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -24.51 11.37 55.43 0.63 -23.88 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.10 -2.32 5.12 -26.65 -0.14 -2.46 16 22 C 0.05 0.94 4.22 -3.83 -0.02 0.92 16 23 C 0.54 8.41 7.15 -14.96 -0.11 8.31 16 24 O -0.52 -10.15 16.10 5.00 0.08 -10.07 16 25 C -0.06 -0.35 5.66 -28.04 -0.16 -0.51 16 26 C -0.12 -0.70 5.96 -26.71 -0.16 -0.86 16 27 C -0.12 -0.67 5.97 -26.69 -0.16 -0.83 16 28 C -0.10 -0.81 5.06 -28.11 -0.14 -0.95 16 29 H 0.17 1.06 7.82 -52.49 -0.41 0.65 16 30 H 0.11 1.50 7.39 -51.93 -0.38 1.12 16 31 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 32 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 39 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.40 7.66 -51.93 -0.40 0.01 16 41 H 0.05 0.96 6.10 -51.93 -0.32 0.64 16 42 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.70 7.44 -51.93 -0.39 0.31 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -32.63 385.46 -10.98 -43.61 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.65 Total: -3.17 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -4.24 Total: -5.49 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.04 Total: -46.64 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.63 -10.98 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793510970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.726 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds