Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39701 * 120.42827 * 308.68849 * 3 2 1 5 5 C 1.38935 * 118.99801 * 180.02562 * 4 3 2 6 6 C 1.36350 * 119.68513 * 359.94156 * 5 4 3 7 7 N 1.35262 * 121.68474 * 0.34351 * 6 5 4 8 8 C 1.46500 * 119.52943 * 179.69739 * 7 6 5 9 9 N 1.46899 * 109.46874 * 269.72873 * 8 7 6 10 10 C 1.46847 * 110.99862 * 155.00258 * 9 8 7 11 11 C 1.53044 * 109.51335 * 174.15436 * 10 9 8 12 12 C 1.53119 * 109.27589 * 59.18419 * 11 10 9 13 13 C 1.50703 * 109.51728 * 182.37636 * 12 11 10 14 14 H 1.08001 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99699 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99840 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47033 * 60.00186 * 17 15 13 19 19 H 1.48497 * 109.46737 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46985 * 299.99870 * 17 15 13 21 21 C 1.53120 * 109.16202 * 302.34077 * 12 11 10 22 22 C 1.46847 * 110.99299 * 30.79417 * 9 8 7 23 23 C 1.34668 * 120.93699 * 359.42110 * 7 6 5 24 24 O 1.21907 * 120.22181 * 180.48724 * 23 7 6 25 25 C 1.50642 * 122.26435 * 180.35178 * 5 4 3 26 26 C 1.52755 * 110.49496 * 342.17479 * 25 5 4 27 27 C 1.53291 * 108.51895 * 51.38318 * 26 25 5 28 28 C 1.50451 * 118.32282 * 359.81272 * 4 3 2 29 29 H 1.07995 * 119.15640 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47046 * 149.72878 * 8 7 6 31 31 H 1.09000 * 109.47053 * 29.72910 * 8 7 6 32 32 H 1.09002 * 109.46448 * 54.14158 * 10 9 8 33 33 H 1.08994 * 109.45958 * 294.16523 * 10 9 8 34 34 H 1.09000 * 109.49745 * 179.12223 * 11 10 9 35 35 H 1.08996 * 109.50070 * 299.23917 * 11 10 9 36 36 H 1.08993 * 109.52284 * 62.25342 * 12 11 10 37 37 H 0.97004 * 119.99580 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.50328 * 177.59853 * 21 12 11 39 39 H 1.08996 * 109.50004 * 297.72216 * 21 12 11 40 40 H 1.09005 * 109.46836 * 65.83946 * 22 9 8 41 41 H 1.08995 * 109.45748 * 305.85482 * 22 9 8 42 42 H 1.08996 * 109.27174 * 221.91039 * 25 5 4 43 43 H 1.09001 * 109.24306 * 102.41578 * 25 5 4 44 44 H 1.09005 * 109.62977 * 291.67372 * 26 25 5 45 45 H 1.08998 * 109.79283 * 171.19111 * 26 25 5 46 46 H 1.09000 * 109.64764 * 170.10918 * 27 26 25 47 47 H 1.09004 * 109.64242 * 49.48354 * 27 26 25 48 48 H 1.09000 * 109.30698 * 283.00996 * 28 4 3 49 49 H 1.09003 * 109.30059 * 42.38602 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -0.7520 0.9403 5 6 4.6648 -0.7293 0.9135 6 6 5.3100 0.0212 -0.0244 7 7 4.6321 0.7571 -0.9346 8 6 5.3733 1.5517 -1.9172 9 7 5.6153 2.8963 -1.3774 10 6 6.7961 3.5085 -1.9997 11 6 6.9323 4.9564 -1.5231 12 6 7.0680 4.9759 0.0020 13 6 7.1439 6.4023 0.4825 14 1 7.0995 7.2146 -0.2279 15 6 7.2690 6.6703 1.8292 16 7 7.3226 5.6812 2.6942 17 14 7.3638 8.4383 2.4248 18 1 6.1287 9.1610 2.0284 19 1 7.4952 8.4559 3.9038 20 1 8.5436 9.1032 1.8155 21 6 5.8488 4.2893 0.6238 22 6 5.7440 2.8607 0.0850 23 6 3.2856 0.7655 -0.9539 24 8 2.6879 1.4266 -1.7857 25 6 5.5009 -1.5184 1.8869 26 6 4.6643 -1.9353 3.0952 27 6 3.3859 -2.6147 2.5912 28 6 2.4958 -1.5530 1.9469 29 1 6.3898 0.0323 -0.0376 30 1 4.7916 1.6282 -2.8359 31 1 6.3269 1.0686 -2.1302 32 1 6.6850 3.4919 -3.0839 33 1 7.6872 2.9478 -1.7174 34 1 7.8176 5.4058 -1.9730 35 1 6.0476 5.5210 -1.8171 36 1 7.9737 4.4446 0.2939 37 1 7.4110 5.8697 3.6417 38 1 5.9600 4.2622 1.7078 39 1 4.9470 4.8435 0.3636 40 1 6.6402 2.3032 0.3574 41 1 4.8686 2.3739 0.5148 42 1 6.3371 -0.9052 2.2226 43 1 5.8849 -2.4096 1.3906 44 1 4.4039 -1.0542 3.6818 45 1 5.2303 -2.6324 3.7131 46 1 2.8606 -3.0742 3.4285 47 1 3.6416 -3.3752 1.8534 48 1 2.1134 -0.8862 2.7197 49 1 1.6575 -2.0398 1.4484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793510970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 5.615628 kcal Electronic energy + Delta-G solvation = -30480.780111 eV Core-core repulsion = 26599.944373 eV Total energy + Delta-G solvation = -3880.835738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.92201 -39.96764 -39.28494 -38.01431 -37.10141 -35.61164 -34.18985 -33.27970 -32.27901 -31.50644 -29.58450 -28.48985 -26.62563 -25.83620 -24.45650 -23.87650 -23.68397 -22.81029 -20.73708 -20.38835 -19.72113 -18.90769 -18.48763 -17.86245 -17.60156 -16.93840 -16.56790 -16.02550 -15.77446 -15.38982 -15.36845 -15.05747 -14.87040 -14.77044 -14.66890 -14.43182 -14.20467 -14.14633 -14.00984 -13.80092 -13.62614 -13.52180 -13.38140 -13.23223 -13.15353 -12.86692 -12.63894 -12.41684 -12.26140 -12.04717 -11.89839 -11.68869 -11.58130 -11.41386 -11.37847 -11.09419 -10.83477 -10.72477 -10.64922 -10.36701 -9.26594 -8.93552 -8.08076 -6.19120 -0.73222 0.71316 1.19843 1.40763 1.42522 1.49014 1.67591 1.78162 2.44033 2.60755 2.91041 2.99215 3.19669 3.35226 3.52762 3.62868 3.73690 3.96762 4.07572 4.08127 4.18376 4.23212 4.34276 4.35951 4.41894 4.50492 4.53783 4.61761 4.68591 4.74946 4.76426 4.84199 4.85760 4.96478 5.06661 5.09732 5.13591 5.21152 5.23329 5.30436 5.34059 5.40267 5.51861 5.55518 5.59360 5.62750 5.81046 5.99288 5.99393 6.16864 6.25633 6.43308 6.45420 6.82818 6.90992 7.48024 8.96032 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.003282 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.247805 B = 8530.440217 C = 9214.654650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.299 3.701 3 C -0.230 4.230 4 C 0.129 3.871 5 C -0.194 4.194 6 C 0.187 3.813 7 N -0.485 5.485 8 C 0.261 3.739 9 N -0.567 5.567 10 C 0.072 3.928 11 C -0.103 4.103 12 C 0.049 3.951 13 C -0.538 4.538 14 H 0.045 0.955 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 0.944 3.056 18 H -0.280 1.280 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.095 4.095 22 C 0.072 3.928 23 C 0.536 3.464 24 O -0.580 6.580 25 C -0.059 4.059 26 C -0.124 4.124 27 C -0.112 4.112 28 C -0.107 4.107 29 H 0.210 0.790 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.064 0.936 39 H 0.009 0.991 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -22.826 -1.026 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.014 4.014 3 C -0.239 4.239 4 C 0.121 3.879 5 C -0.199 4.199 6 C 0.056 3.944 7 N -0.192 5.192 8 C 0.052 3.948 9 N -0.295 5.295 10 C -0.055 4.055 11 C -0.141 4.141 12 C 0.030 3.970 13 C -0.576 4.576 14 H 0.063 0.937 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.770 3.230 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.133 4.133 22 C -0.056 4.056 23 C 0.337 3.663 24 O -0.463 6.463 25 C -0.096 4.096 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.143 4.143 29 H 0.226 0.774 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.113 0.887 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.731 -22.085 -1.576 22.153 hybrid contribution 0.430 1.376 0.520 1.532 sum 1.160 -20.709 -1.057 20.768 Atomic orbital electron populations 1.81158 1.12729 1.10960 1.10296 1.25066 0.92119 0.92094 0.92119 1.16744 0.85264 1.14402 1.07445 1.20568 0.93698 0.85484 0.88127 1.19294 0.91759 1.06546 1.02308 1.23070 1.00803 0.85450 0.85056 1.45492 1.07422 1.37450 1.28816 1.22880 0.96928 0.84610 0.90366 1.62203 1.41575 1.19538 1.06223 1.22080 0.89427 0.94816 0.99190 1.21559 0.99943 0.95485 0.97084 1.18627 0.93045 0.94039 0.91267 1.21580 1.49908 0.93714 0.92370 0.93687 1.25604 0.94952 1.00293 0.97180 1.69947 1.50999 1.32032 1.02089 0.85837 0.78521 0.81436 0.77208 1.20626 1.20729 1.19527 1.21408 0.97543 0.93222 1.01136 1.22032 0.98827 0.98060 0.86662 1.16675 0.81603 0.82570 0.85428 1.90940 1.67705 1.46063 1.41608 1.20361 0.96543 0.99548 0.93136 1.21611 0.96192 1.01055 0.97311 1.21581 0.95721 0.96510 1.01070 1.20914 0.98438 0.98243 0.96741 0.77374 0.87852 0.86558 0.88904 0.92918 0.92026 0.94426 0.97627 0.93045 0.91707 0.97202 0.93359 0.93023 0.89057 0.87911 0.92369 0.88859 0.89696 0.89981 0.88728 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.16 18.54 19.01 0.35 -16.80 16 2 C 0.30 9.82 13.46 88.33 1.19 11.01 16 3 C -0.23 -6.37 5.80 -20.81 -0.12 -6.49 16 4 C 0.13 2.41 5.79 -19.42 -0.11 2.29 16 5 C -0.19 -2.61 5.70 -20.16 -0.11 -2.73 16 6 C 0.19 2.65 7.66 83.72 0.64 3.29 16 7 N -0.49 -10.94 1.58 -659.81 -1.04 -11.99 16 8 C 0.26 5.77 5.84 170.81 1.00 6.76 16 9 N -0.57 -17.39 4.91 -908.70 -4.46 -21.85 16 10 C 0.07 2.04 5.30 86.33 0.46 2.50 16 11 C -0.10 -3.97 5.32 30.65 0.16 -3.81 16 12 C 0.05 2.31 2.16 -11.46 -0.02 2.28 16 13 C -0.54 -29.32 8.57 25.60 0.22 -29.10 16 14 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 15 C 0.02 1.02 5.31 84.66 0.45 1.47 16 16 N -0.91 -50.62 11.37 21.45 0.24 -50.37 16 17 Si 0.94 43.43 29.54 68.60 2.03 45.45 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 C -0.09 -4.38 5.12 30.65 0.16 -4.22 16 22 C 0.07 2.44 4.22 86.33 0.36 2.80 16 23 C 0.54 16.70 7.15 85.13 0.61 17.31 16 24 O -0.58 -23.68 16.10 -5.01 -0.08 -23.76 16 25 C -0.06 -0.40 5.66 29.75 0.17 -0.23 16 26 C -0.12 -0.93 5.96 30.61 0.18 -0.75 16 27 C -0.11 -0.91 5.97 30.62 0.18 -0.73 16 28 C -0.11 -1.55 5.06 29.70 0.15 -1.40 16 29 H 0.21 1.25 7.82 -2.91 -0.02 1.23 16 30 H 0.10 2.56 7.39 -2.39 -0.02 2.55 16 31 H 0.12 1.45 7.71 -2.39 -0.02 1.43 16 32 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.06 3.36 6.17 -2.39 -0.01 3.35 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.05 1.41 7.66 -2.38 -0.02 1.39 16 41 H 0.05 1.77 6.10 -2.39 -0.01 1.76 16 42 H 0.09 0.53 8.12 -2.39 -0.02 0.51 16 43 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.06 0.61 8.09 -2.38 -0.02 0.59 16 45 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.08 0.52 8.10 -2.38 -0.02 0.50 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.08 1.29 7.44 -2.39 -0.02 1.27 16 Total: -1.00 -77.50 385.46 3.55 -73.96 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 0.95 Total: 5.11 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.56 Total: 0.26 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.91 Total: -101.02 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.08 Total: -23.76 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -77.50 3.55 -73.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793510970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.573 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds