Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.43131 * 113.99896 * 2 1 4 4 H 1.09559 * 110.71566 * 29.30477 * 3 2 1 5 5 C 1.59819 * 112.31095 * 263.47556 * 3 2 1 6 6 H 1.09373 * 117.54844 * 62.95000 * 5 3 2 7 7 C 1.57750 * 106.10286 * 196.07855 * 5 3 2 8 8 C 1.55346 * 109.01852 * 65.72679 * 7 5 3 9 9 H 1.09779 * 113.96840 * 126.95026 * 8 7 5 10 10 C 1.56254 * 109.28521 * 255.75807 * 8 7 5 11 11 N 1.51839 * 106.52722 * 95.57348 * 10 8 7 12 12 C 1.33577 * 133.99831 * 150.08037 * 11 10 8 13 13 O 1.21280 * 120.00386 * 179.89778 * 12 11 10 14 14 C 1.50702 * 119.99825 * 359.89259 * 12 11 10 15 15 C 1.50701 * 109.47408 * 179.97438 * 14 12 11 16 16 C 1.37639 * 120.13080 * 265.00788 * 15 14 12 17 17 C 1.38607 * 120.25016 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.50171 * 0.02562 * 17 16 15 19 19 C 1.37592 * 120.24765 * 0.03321 * 18 17 16 20 20 C 1.40694 * 120.12471 * 84.72545 * 15 14 12 21 21 C 1.41399 * 120.24634 * 0.02562 * 20 15 14 22 22 H 1.07995 * 120.00052 * 333.89786 * 21 20 15 23 23 C 1.39949 * 120.00008 * 153.89420 * 21 20 15 24 24 N 1.30822 * 120.00035 * 343.71728 * 23 21 20 25 25 Si 1.86796 * 119.99884 * 163.70784 * 23 21 20 26 26 H 1.48500 * 109.46855 * 94.96485 * 25 23 21 27 27 H 1.48498 * 109.47355 * 214.96743 * 25 23 21 28 28 H 1.48499 * 109.46959 * 334.96864 * 25 23 21 29 29 C 1.42795 * 92.24431 * 330.00654 * 11 10 8 30 30 H 1.09595 * 79.39905 * 329.10452 * 29 11 10 31 31 C 1.58497 * 101.40007 * 3.38735 * 8 7 5 32 32 H 1.09474 * 120.85323 * 166.14935 * 31 8 7 33 33 C 1.56388 * 102.58500 * 30.24903 * 31 8 7 34 34 H 1.08999 * 109.47168 * 59.99456 * 1 2 3 35 35 H 1.09002 * 109.46657 * 180.02562 * 1 2 3 36 36 H 1.09001 * 109.46534 * 299.99431 * 1 2 3 37 37 H 1.08719 * 109.90166 * 304.86462 * 7 5 3 38 38 H 1.09149 * 109.20456 * 185.02628 * 7 5 3 39 39 H 1.08670 * 111.24026 * 334.80908 * 10 8 7 40 40 H 1.09393 * 109.67988 * 213.56640 * 10 8 7 41 41 H 1.08995 * 109.47558 * 300.00529 * 14 12 11 42 42 H 1.09007 * 109.46952 * 60.00413 * 14 12 11 43 43 H 1.08005 * 119.87495 * 359.97438 * 16 15 14 44 44 H 1.08008 * 119.75207 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.87259 * 180.02562 * 18 17 16 46 46 H 1.08002 * 120.12900 * 179.97438 * 19 18 17 47 47 H 0.97005 * 119.99731 * 180.02562 * 24 23 21 48 48 H 1.08933 * 111.97045 * 189.60507 * 33 31 8 49 49 H 1.09155 * 111.64139 * 64.38558 * 33 31 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0112 1.3076 0.0000 4 1 1.3525 2.0251 0.5016 5 6 2.4115 1.7935 -1.4690 6 1 1.6057 1.9159 -2.1984 7 6 3.3926 3.0133 -1.2742 8 6 4.7012 2.5087 -0.6062 9 1 5.6144 2.7860 -1.1487 10 6 4.7059 2.9256 0.8997 11 7 4.1767 1.7348 1.6791 12 6 4.3883 1.2640 2.9111 13 8 3.8134 0.2638 3.2852 14 6 5.3416 1.9757 3.8363 15 6 5.4000 1.2477 5.1545 16 6 4.6022 1.6496 6.2017 17 6 4.6536 0.9815 7.4150 18 6 5.5074 -0.0971 7.5890 19 6 6.3148 -0.5155 6.5564 20 6 6.2659 0.1509 5.3177 21 6 7.0862 -0.2744 4.2473 22 1 6.7874 -0.0802 3.2278 23 6 8.2852 -0.9470 4.5090 24 7 8.8092 -0.9078 5.7071 25 14 9.1373 -1.9010 3.1477 26 1 10.1689 -1.0423 2.5125 27 1 9.7830 -3.1098 3.7196 28 1 8.1372 -2.3093 2.1287 29 6 3.3613 1.3106 0.5863 30 1 3.3615 2.3951 0.4286 31 6 4.4313 0.9489 -0.5271 32 1 5.2446 0.2487 -0.3110 33 6 3.5142 0.6984 -1.7688 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 -0.3632 0.5138 0.8901 37 1 2.9221 3.7711 -0.6525 38 1 3.6289 3.4433 -2.2491 39 1 4.0854 3.8018 1.0676 40 1 5.7302 3.1375 1.2201 41 1 6.3350 1.9970 3.3883 42 1 4.9950 2.9961 4.0003 43 1 3.9337 2.4887 6.0774 44 1 4.0243 1.3039 8.2315 45 1 5.5389 -0.6106 8.5386 46 1 6.9795 -1.3556 6.6941 47 1 9.6405 -1.3737 5.8883 48 1 3.0954 -0.3072 -1.7699 49 1 4.0372 0.9064 -2.7040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804382616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = 116.668024 kcal Electronic energy + Delta-G solvation = -30778.058708 eV Core-core repulsion = 26869.745812 eV Total energy + Delta-G solvation = -3908.312896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.31861 -38.67858 -37.48538 -36.95975 -34.46309 -33.55378 -31.60561 -30.44887 -29.39569 -28.55639 -28.42620 -26.73730 -26.00247 -24.87031 -24.85243 -22.22529 -20.86027 -20.43145 -19.79990 -18.96991 -18.25042 -17.08964 -16.77624 -16.56936 -16.09521 -15.61932 -15.39668 -14.88500 -14.79061 -14.47522 -14.27759 -13.92567 -13.65379 -13.53620 -13.16761 -12.82594 -12.52440 -12.44712 -12.27855 -11.68207 -11.61797 -11.58833 -11.50258 -11.36091 -11.19950 -11.09477 -11.00590 -10.91691 -10.86195 -10.76477 -10.63672 -10.49428 -10.32516 -9.68288 -9.41963 -9.39018 -9.30558 -9.09054 -8.67496 -8.18020 -7.24191 -7.21731 -6.67085 -4.26964 2.51036 2.86471 3.10124 3.12280 3.18405 3.32872 3.38595 3.61714 4.00062 4.10258 4.17151 4.25016 4.34726 4.52055 4.71428 4.72379 4.80370 4.85244 5.03311 5.14312 5.22836 5.28297 5.33327 5.44242 5.47271 5.49701 5.60737 5.62682 5.66873 5.77369 5.84435 5.85307 5.91622 6.03219 6.10109 6.13194 6.26630 6.34108 6.48980 6.56756 6.73522 6.90553 7.14214 7.15575 7.36515 7.49172 7.71759 7.98640 8.10109 8.17992 8.19684 8.38712 8.71995 8.98087 8.99539 9.08763 10.27003 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003849 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.711760 B = 7272.584673 C = 8351.290837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.148 3.852 4 H 0.070 0.930 5 C -0.124 4.124 6 H 0.118 0.882 7 C -0.119 4.119 8 C -0.116 4.116 9 H 0.101 0.899 10 C 0.113 3.887 11 N -0.601 5.601 12 C 0.531 3.469 13 O -0.509 6.509 14 C -0.063 4.063 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.130 3.870 21 C -0.454 4.454 22 H 0.074 0.926 23 C 0.077 3.923 24 N -0.796 5.796 25 Si 0.901 3.099 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.260 1.260 29 C 0.019 3.981 30 H 0.079 0.921 31 C -0.096 4.096 32 H 0.122 0.878 33 C -0.112 4.112 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.279 0.721 48 H 0.081 0.919 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 9.069 -16.552 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.286 6.286 3 C 0.089 3.911 4 H 0.087 0.913 5 C -0.143 4.143 6 H 0.136 0.864 7 C -0.157 4.157 8 C -0.135 4.135 9 H 0.119 0.881 10 C -0.008 4.008 11 N -0.337 5.337 12 C 0.322 3.678 13 O -0.382 6.382 14 C -0.103 4.103 15 C -0.184 4.184 16 C -0.100 4.100 17 C -0.259 4.259 18 C -0.126 4.126 19 C -0.178 4.178 20 C 0.127 3.873 21 C -0.484 4.484 22 H 0.092 0.908 23 C -0.140 4.140 24 N -0.422 5.422 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.184 1.184 29 C -0.085 4.085 30 H 0.096 0.904 31 C -0.116 4.116 32 H 0.140 0.860 33 C -0.149 4.149 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.850 8.302 -15.962 20.050 hybrid contribution 0.216 -0.129 -0.351 0.432 sum -8.633 8.173 -16.312 20.185 Atomic orbital electron populations 1.22779 0.81954 1.02750 0.99486 1.88220 1.18931 1.27098 1.94313 1.22796 0.89668 0.85521 0.93155 0.91268 1.25419 0.97236 0.95817 0.95827 0.86441 1.23085 0.94252 0.97032 1.01281 1.24831 0.97894 0.96859 0.93920 0.88086 1.23234 1.00220 0.87105 0.90244 1.49642 1.43695 1.28921 1.11491 1.20847 0.82364 0.84565 0.80034 1.90718 1.49106 1.24624 1.73757 1.20240 0.98598 0.97459 0.94009 1.19081 1.05862 1.00365 0.93066 1.20283 0.97540 0.98414 0.93724 1.20289 1.06008 1.02407 0.97215 1.20669 0.97233 0.97133 0.97550 1.21295 1.01003 1.01661 0.93843 1.17335 0.89278 0.88093 0.92568 1.19478 1.02899 1.31879 0.94160 0.90815 1.25869 0.97238 0.94628 0.96250 1.69827 1.16949 1.33768 1.21642 0.86415 0.79510 0.79710 0.81848 1.19642 1.20025 1.18417 1.22218 0.92848 1.06275 0.87190 0.90410 1.25122 0.97741 0.94298 0.94449 0.85995 1.23435 0.95242 0.99338 0.96916 0.94356 0.89755 0.94197 0.91534 0.90715 0.90419 0.89987 0.88746 0.91006 0.89905 0.89709 0.89595 0.86500 0.91048 0.90047 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.87 101.05 1.10 1.38 16 2 O -0.37 -5.33 9.71 -35.23 -0.34 -5.68 16 3 C 0.15 1.86 3.08 -25.69 -0.08 1.78 16 4 H 0.07 0.80 7.90 -51.61 -0.41 0.39 16 5 C -0.12 -1.09 5.56 -81.28 -0.45 -1.55 16 6 H 0.12 0.78 8.17 -51.72 -0.42 0.36 16 7 C -0.12 -0.90 5.34 -22.89 -0.12 -1.02 16 8 C -0.12 -1.10 4.52 -84.59 -0.38 -1.49 16 9 H 0.10 0.78 8.21 -51.49 -0.42 0.36 16 10 C 0.11 1.29 6.28 0.73 0.00 1.29 16 11 N -0.60 -10.25 3.25 -215.32 -0.70 -10.95 16 12 C 0.53 11.60 7.61 -11.52 -0.09 11.51 16 13 O -0.51 -13.71 16.69 5.56 0.09 -13.62 16 14 C -0.06 -1.34 4.90 -29.03 -0.14 -1.48 16 15 C -0.18 -4.61 4.43 -103.91 -0.46 -5.07 16 16 C -0.08 -1.97 9.66 -39.66 -0.38 -2.35 16 17 C -0.24 -5.82 10.05 -39.29 -0.39 -6.21 16 18 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 19 C -0.16 -4.40 8.69 -38.87 -0.34 -4.74 16 20 C 0.13 3.61 5.56 -106.82 -0.59 3.02 16 21 C -0.45 -12.45 8.14 -37.74 -0.31 -12.75 16 22 H 0.07 1.99 6.67 -52.49 -0.35 1.64 16 23 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 24 N -0.80 -21.07 10.95 55.55 0.61 -20.46 16 25 Si 0.90 19.47 29.59 -169.99 -5.03 14.44 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 29 C 0.02 0.29 5.50 -69.57 -0.38 -0.09 16 30 H 0.08 0.95 1.20 -175.23 -0.21 0.74 16 31 C -0.10 -1.24 5.93 -82.66 -0.49 -1.73 16 32 H 0.12 1.79 8.18 -51.66 -0.42 1.37 16 33 C -0.11 -1.16 6.21 -22.00 -0.14 -1.30 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 37 H 0.07 0.46 7.04 -52.09 -0.37 0.09 16 38 H 0.07 0.44 8.15 -51.85 -0.42 0.01 16 39 H 0.08 0.71 7.27 -52.11 -0.38 0.33 16 40 H 0.08 0.88 8.16 -51.71 -0.42 0.46 16 41 H 0.09 1.95 7.08 -51.93 -0.37 1.58 16 42 H 0.07 1.28 8.05 -51.92 -0.42 0.86 16 43 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.08 1.82 8.06 -52.48 -0.42 1.40 16 45 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 46 H 0.12 3.31 6.20 -52.49 -0.33 2.99 16 47 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 48 H 0.08 0.97 7.51 -51.97 -0.39 0.58 16 49 H 0.07 0.58 8.15 -51.84 -0.42 0.16 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -34.50 383.84 -11.14 -45.64 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.42 Total: 6.84 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -4.14 Total: -22.00 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: -0.09 Total: -31.41 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.25 Total: -19.29 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.50 -11.14 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804382616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.311 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds