Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.43085 * 113.99707 * 2 1 4 4 H 1.08771 * 109.13684 * 29.18407 * 3 2 1 5 5 C 1.56516 * 109.31838 * 150.00094 * 3 2 1 6 6 H 1.09718 * 114.26657 * 353.54240 * 5 3 2 7 7 C 1.58858 * 100.55687 * 116.73157 * 5 3 2 8 8 H 1.09336 * 120.67467 * 192.40905 * 7 5 3 9 9 C 1.56497 * 102.72318 * 328.54837 * 7 5 3 10 10 C 1.56664 * 109.28746 * 268.97108 * 3 2 1 11 11 H 1.09329 * 116.28915 * 40.70860 * 10 3 2 12 12 C 1.59166 * 107.78079 * 173.85520 * 10 3 2 13 13 C 1.47076 * 96.21398 * 45.65581 * 12 10 3 14 14 H 1.10570 * 85.63343 * 295.28623 * 13 12 10 15 15 C 1.49767 * 147.07560 * 233.46715 * 13 12 10 16 16 N 1.50384 * 108.47885 * 225.19016 * 5 3 2 17 17 C 1.34777 * 126.27011 * 84.75068 * 16 5 3 18 18 O 1.21276 * 120.00564 * 359.11511 * 17 16 5 19 19 C 1.50703 * 119.99890 * 179.11133 * 17 16 5 20 20 C 1.50696 * 109.47321 * 180.02562 * 19 17 16 21 21 C 1.37639 * 120.13025 * 264.74616 * 20 19 17 22 22 C 1.38607 * 120.25010 * 179.97438 * 21 20 19 23 23 C 1.38659 * 120.50281 * 359.97438 * 22 21 20 24 24 C 1.37591 * 120.24663 * 0.26986 * 23 22 21 25 25 C 1.40703 * 120.12727 * 85.00096 * 20 19 17 26 26 C 1.41393 * 120.24613 * 0.03517 * 25 20 19 27 27 H 1.08010 * 119.99699 * 334.54189 * 26 25 20 28 28 C 1.39944 * 120.00145 * 154.54391 * 26 25 20 29 29 N 1.30820 * 120.00082 * 334.60346 * 28 26 25 30 30 Si 1.86805 * 119.99965 * 154.60489 * 28 26 25 31 31 H 1.48500 * 109.46915 * 180.02562 * 30 28 26 32 32 H 1.48501 * 109.46824 * 299.99769 * 30 28 26 33 33 H 1.48497 * 109.46912 * 59.99833 * 30 28 26 34 34 H 1.08997 * 109.47389 * 299.99651 * 1 2 3 35 35 H 1.09008 * 109.46788 * 180.02562 * 1 2 3 36 36 H 1.09003 * 109.47639 * 60.00411 * 1 2 3 37 37 H 1.09014 * 112.05627 * 296.63142 * 9 7 5 38 38 H 1.09047 * 112.01448 * 170.70821 * 9 7 5 39 39 H 1.09307 * 112.24890 * 288.54278 * 12 10 3 40 40 H 1.09304 * 112.22377 * 162.71565 * 12 10 3 41 41 H 1.08135 * 112.17311 * 343.85721 * 15 13 12 42 42 H 1.08080 * 112.24657 * 213.15199 * 15 13 12 43 43 H 1.09001 * 109.47087 * 300.00434 * 19 17 16 44 44 H 1.09001 * 109.47247 * 59.99793 * 19 17 16 45 45 H 1.08004 * 119.87486 * 359.97438 * 21 20 19 46 46 H 1.08002 * 119.75002 * 179.97438 * 22 21 20 47 47 H 1.08002 * 119.87325 * 179.97438 * 23 22 21 48 48 H 1.08002 * 120.12930 * 179.70486 * 24 23 22 49 49 H 0.97006 * 119.99562 * 354.16987 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0109 1.3072 0.0000 4 1 1.3363 1.9978 0.5011 5 6 3.3900 1.2600 0.7385 6 1 3.6147 0.2966 1.2131 7 6 4.3693 1.6551 -0.4483 8 1 5.4504 1.5279 -0.3452 9 6 3.6410 1.0720 -1.7048 10 6 2.2456 1.7691 -1.4785 11 1 1.4530 1.5294 -2.1923 12 6 2.7405 3.2815 -1.4424 13 6 3.7231 3.1017 -0.3629 14 1 2.8517 2.8693 0.2768 15 6 4.2186 3.5579 0.9748 16 7 3.4705 2.4351 1.6735 17 6 2.9806 2.4910 2.9278 18 8 2.3962 1.5360 3.3938 19 6 3.1590 3.7404 3.7514 20 6 2.5256 3.5448 5.1047 21 6 1.2398 3.9785 5.3348 22 6 0.6545 3.7993 6.5785 23 6 1.3550 3.1820 7.6036 24 6 2.6433 2.7451 7.3976 25 6 3.2482 2.9229 6.1394 26 6 4.5720 2.4788 5.9165 27 1 4.8965 2.2285 4.9172 28 6 5.4616 2.3635 6.9906 29 7 5.2893 3.0915 8.0637 30 14 6.8954 1.1700 6.8919 31 1 7.6822 1.2366 8.1495 32 1 6.3789 -0.2096 6.7042 33 1 7.7641 1.5339 5.7439 34 1 -0.3634 0.5138 0.8900 35 1 -0.3633 -1.0278 0.0005 36 1 -0.3634 0.5138 -0.8900 37 1 3.5592 -0.0142 -1.6632 38 1 4.1061 1.3990 -2.6353 39 1 1.9407 3.9721 -1.1629 40 1 3.2099 3.5853 -2.3816 41 1 3.8332 4.5322 1.2422 42 1 5.2904 3.4564 1.0705 43 1 4.2225 3.9456 3.8746 44 1 2.6833 4.5804 3.2451 45 1 0.6847 4.4602 4.5434 46 1 -0.3548 4.1431 6.7503 47 1 0.8893 3.0481 8.5688 48 1 3.1889 2.2688 8.1989 49 1 4.5970 3.7708 8.0829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804382617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = 95.189629 kcal Electronic energy + Delta-G solvation = -31035.776384 eV Core-core repulsion = 27126.532115 eV Total energy + Delta-G solvation = -3909.244269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.13479 -38.79436 -37.52434 -37.16582 -34.49110 -33.83550 -31.80921 -30.42095 -29.21726 -28.98678 -28.05152 -26.79197 -25.96468 -25.25350 -24.79070 -21.30732 -20.92044 -20.40279 -20.13919 -19.45042 -18.39661 -17.69019 -16.76451 -16.57815 -16.19082 -15.66945 -15.21086 -15.01887 -14.64962 -14.51601 -14.15033 -14.05398 -13.80494 -13.63974 -13.46819 -12.94056 -12.82007 -12.40254 -12.28420 -12.01112 -11.88697 -11.78508 -11.64433 -11.44357 -11.36890 -11.23350 -11.20458 -11.14713 -10.83626 -10.73412 -10.45229 -10.37227 -10.19985 -9.83851 -9.63764 -9.36619 -9.25779 -8.94187 -8.93662 -8.19145 -7.54604 -7.49072 -7.10890 -4.40287 2.64794 2.85730 2.98069 3.16009 3.17200 3.30629 3.33249 3.39462 3.81606 4.04087 4.05778 4.12308 4.40028 4.59489 4.64099 4.83039 4.85373 4.97563 5.09419 5.18910 5.25783 5.31475 5.36935 5.43410 5.47169 5.58469 5.60860 5.65282 5.67659 5.76233 5.80467 5.80686 5.89107 5.96338 6.00384 6.09073 6.16696 6.27060 6.30357 6.33808 6.37771 6.69169 7.01301 7.08080 7.22254 7.43328 7.65836 7.78523 7.84529 7.87931 7.96607 8.22513 8.36184 8.74632 8.81005 8.94219 10.08833 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003832 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.566825 B = 7305.939605 C = 8293.996137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.080 3.920 4 H 0.060 0.940 5 C 0.141 3.859 6 H 0.108 0.892 7 C -0.098 4.098 8 H 0.126 0.874 9 C -0.110 4.110 10 C -0.134 4.134 11 H 0.109 0.891 12 C -0.029 4.029 13 C -0.303 4.303 14 H 0.122 0.878 15 C 0.180 3.820 16 N -0.661 5.661 17 C 0.520 3.480 18 O -0.513 6.513 19 C -0.064 4.064 20 C -0.187 4.187 21 C -0.069 4.069 22 C -0.254 4.254 23 C -0.086 4.086 24 C -0.215 4.215 25 C 0.117 3.883 26 C -0.515 4.515 27 H 0.071 0.929 28 C 0.041 3.959 29 N -0.798 5.798 30 Si 1.060 2.940 31 H -0.274 1.274 32 H -0.275 1.275 33 H -0.276 1.276 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.105 0.895 49 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 0.814 -19.499 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.020 3.980 4 H 0.078 0.922 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.116 4.116 8 H 0.144 0.856 9 C -0.148 4.148 10 C -0.152 4.152 11 H 0.127 0.873 12 C -0.066 4.066 13 C -0.322 4.322 14 H 0.138 0.862 15 C 0.060 3.940 16 N -0.403 5.403 17 C 0.310 3.690 18 O -0.386 6.386 19 C -0.103 4.103 20 C -0.188 4.188 21 C -0.087 4.087 22 C -0.273 4.273 23 C -0.104 4.104 24 C -0.235 4.235 25 C 0.114 3.886 26 C -0.543 4.543 27 H 0.089 0.911 28 C -0.181 4.181 29 N -0.421 5.421 30 Si 0.883 3.117 31 H -0.198 1.198 32 H -0.201 1.201 33 H -0.202 1.202 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.742 -0.524 -18.101 18.124 hybrid contribution -1.825 0.709 -0.596 2.047 sum -2.567 0.185 -18.697 18.874 Atomic orbital electron populations 1.22781 0.81167 1.02702 0.99825 1.87928 1.19580 1.27237 1.94772 1.24338 0.94721 0.84707 0.94186 0.92213 1.24123 0.92337 0.90287 0.89268 0.87370 1.25140 0.98129 0.95017 0.93350 0.85616 1.23348 0.94163 1.00189 0.97081 1.25126 0.98400 0.95173 0.96546 0.87286 1.21061 0.94212 0.94770 0.96605 1.23675 1.05453 1.02219 1.00836 0.86172 1.21227 0.96317 0.89896 0.86512 1.52709 1.57043 1.16181 1.14408 1.21262 0.77864 0.90733 0.79109 1.90700 1.40878 1.38100 1.68951 1.20241 1.02964 0.93447 0.93672 1.19009 0.96081 1.09357 0.94391 1.20331 0.94041 0.98801 0.95559 1.20244 0.99457 1.12722 0.94868 1.20602 0.94853 0.98145 0.96829 1.21135 0.95421 1.08055 0.98853 1.17385 0.92751 0.87773 0.90682 1.20440 0.96198 1.40604 0.97101 0.91066 1.26925 1.01956 0.97685 0.91506 1.70453 1.29457 1.13494 1.28707 0.83718 0.74677 0.76167 0.77093 1.19833 1.20053 1.20196 0.93871 0.89618 0.94371 0.90559 0.90618 0.91341 0.90926 0.88933 0.89090 0.88588 0.90940 0.89798 0.89489 0.89370 0.87743 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.83 101.05 1.09 1.47 16 2 O -0.38 -5.47 10.31 -35.23 -0.36 -5.83 16 3 C 0.08 1.07 2.06 -22.86 -0.05 1.02 16 4 H 0.06 0.91 7.16 -52.06 -0.37 0.53 16 5 C 0.14 2.07 4.19 -60.61 -0.25 1.82 16 6 H 0.11 1.85 8.18 -51.52 -0.42 1.43 16 7 C -0.10 -1.06 5.63 -82.34 -0.46 -1.52 16 8 H 0.13 1.21 8.17 -51.74 -0.42 0.79 16 9 C -0.11 -1.04 6.34 -22.33 -0.14 -1.18 16 10 C -0.13 -1.31 5.10 -82.68 -0.42 -1.73 16 11 H 0.11 0.93 8.17 -51.74 -0.42 0.51 16 12 C -0.03 -0.25 6.51 -26.14 -0.17 -0.43 16 13 C -0.30 -3.17 5.51 -91.92 -0.51 -3.68 16 14 H 0.12 1.52 1.59 -131.73 -0.21 1.31 16 15 C 0.18 2.08 7.08 -2.56 -0.02 2.06 16 16 N -0.66 -10.52 2.47 -180.37 -0.44 -10.97 16 17 C 0.52 10.69 7.52 -10.98 -0.08 10.61 16 18 O -0.51 -13.02 16.42 5.56 0.09 -12.93 16 19 C -0.06 -1.28 4.21 -29.04 -0.12 -1.41 16 20 C -0.19 -4.56 4.43 -103.91 -0.46 -5.02 16 21 C -0.07 -1.61 9.66 -39.66 -0.38 -1.99 16 22 C -0.25 -5.94 10.05 -39.29 -0.39 -6.34 16 23 C -0.09 -2.10 10.02 -39.66 -0.40 -2.50 16 24 C -0.22 -5.76 7.95 -38.88 -0.31 -6.07 16 25 C 0.12 3.16 5.30 -106.82 -0.57 2.59 16 26 C -0.52 -13.80 8.08 -37.74 -0.31 -14.11 16 27 H 0.07 1.89 6.72 -52.48 -0.35 1.54 16 28 C 0.04 1.06 4.94 -17.34 -0.09 0.97 16 29 N -0.80 -21.32 12.32 55.55 0.68 -20.64 16 30 Si 1.06 22.31 30.00 -169.99 -5.10 17.21 16 31 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 32 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 33 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 34 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.78 8.11 -51.92 -0.42 0.36 16 38 H 0.08 0.59 8.13 -51.90 -0.42 0.17 16 39 H 0.07 0.58 8.17 -51.76 -0.42 0.16 16 40 H 0.07 0.53 8.16 -51.76 -0.42 0.11 16 41 H 0.09 0.95 7.55 -52.41 -0.40 0.55 16 42 H 0.09 0.95 7.94 -52.44 -0.42 0.53 16 43 H 0.10 1.92 7.05 -51.93 -0.37 1.55 16 44 H 0.07 1.22 7.83 -51.93 -0.41 0.82 16 45 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 47 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 48 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16 49 H 0.30 8.18 6.69 -40.82 -0.27 7.91 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -32.21 382.89 -10.81 -43.02 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.42 Total: 9.79 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -4.03 Total: -25.44 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.24 Total: -31.60 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.27 Total: -18.75 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.10 Total: 17.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.21 -10.81 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804382617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.212 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds