Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.43085 * 113.99707 * 2 1 4 4 H 1.08771 * 109.13684 * 29.18407 * 3 2 1 5 5 C 1.56516 * 109.31838 * 150.00094 * 3 2 1 6 6 H 1.09718 * 114.26657 * 353.54240 * 5 3 2 7 7 C 1.58858 * 100.55687 * 116.73157 * 5 3 2 8 8 H 1.09336 * 120.67467 * 192.40905 * 7 5 3 9 9 C 1.56497 * 102.72318 * 328.54837 * 7 5 3 10 10 C 1.56664 * 109.28746 * 268.97108 * 3 2 1 11 11 H 1.09329 * 116.28915 * 40.70860 * 10 3 2 12 12 C 1.59166 * 107.78079 * 173.85520 * 10 3 2 13 13 C 1.47076 * 96.21398 * 45.65581 * 12 10 3 14 14 H 1.10570 * 85.63343 * 295.28623 * 13 12 10 15 15 C 1.49767 * 147.07560 * 233.46715 * 13 12 10 16 16 N 1.50384 * 108.47885 * 225.19016 * 5 3 2 17 17 C 1.34777 * 126.27011 * 84.75068 * 16 5 3 18 18 O 1.21276 * 120.00564 * 359.11511 * 17 16 5 19 19 C 1.50703 * 119.99890 * 179.11133 * 17 16 5 20 20 C 1.50696 * 109.47321 * 180.02562 * 19 17 16 21 21 C 1.37639 * 120.13025 * 264.74616 * 20 19 17 22 22 C 1.38607 * 120.25010 * 179.97438 * 21 20 19 23 23 C 1.38659 * 120.50281 * 359.97438 * 22 21 20 24 24 C 1.37591 * 120.24663 * 0.26986 * 23 22 21 25 25 C 1.40703 * 120.12727 * 85.00096 * 20 19 17 26 26 C 1.41393 * 120.24613 * 0.03517 * 25 20 19 27 27 H 1.08010 * 119.99699 * 334.54189 * 26 25 20 28 28 C 1.39944 * 120.00145 * 154.54391 * 26 25 20 29 29 N 1.30820 * 120.00082 * 334.60346 * 28 26 25 30 30 Si 1.86805 * 119.99965 * 154.60489 * 28 26 25 31 31 H 1.48500 * 109.46915 * 180.02562 * 30 28 26 32 32 H 1.48501 * 109.46824 * 299.99769 * 30 28 26 33 33 H 1.48497 * 109.46912 * 59.99833 * 30 28 26 34 34 H 1.08997 * 109.47389 * 299.99651 * 1 2 3 35 35 H 1.09008 * 109.46788 * 180.02562 * 1 2 3 36 36 H 1.09003 * 109.47639 * 60.00411 * 1 2 3 37 37 H 1.09014 * 112.05627 * 296.63142 * 9 7 5 38 38 H 1.09047 * 112.01448 * 170.70821 * 9 7 5 39 39 H 1.09307 * 112.24890 * 288.54278 * 12 10 3 40 40 H 1.09304 * 112.22377 * 162.71565 * 12 10 3 41 41 H 1.08135 * 112.17311 * 343.85721 * 15 13 12 42 42 H 1.08080 * 112.24657 * 213.15199 * 15 13 12 43 43 H 1.09001 * 109.47087 * 300.00434 * 19 17 16 44 44 H 1.09001 * 109.47247 * 59.99793 * 19 17 16 45 45 H 1.08004 * 119.87486 * 359.97438 * 21 20 19 46 46 H 1.08002 * 119.75002 * 179.97438 * 22 21 20 47 47 H 1.08002 * 119.87325 * 179.97438 * 23 22 21 48 48 H 1.08002 * 120.12930 * 179.70486 * 24 23 22 49 49 H 0.97006 * 119.99562 * 354.16987 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0109 1.3072 0.0000 4 1 1.3363 1.9978 0.5011 5 6 3.3900 1.2600 0.7385 6 1 3.6147 0.2966 1.2131 7 6 4.3693 1.6551 -0.4483 8 1 5.4504 1.5279 -0.3452 9 6 3.6410 1.0720 -1.7048 10 6 2.2456 1.7691 -1.4785 11 1 1.4530 1.5294 -2.1923 12 6 2.7405 3.2815 -1.4424 13 6 3.7231 3.1017 -0.3629 14 1 2.8517 2.8693 0.2768 15 6 4.2186 3.5579 0.9748 16 7 3.4705 2.4351 1.6735 17 6 2.9806 2.4910 2.9278 18 8 2.3962 1.5360 3.3938 19 6 3.1590 3.7404 3.7514 20 6 2.5256 3.5448 5.1047 21 6 1.2398 3.9785 5.3348 22 6 0.6545 3.7993 6.5785 23 6 1.3550 3.1820 7.6036 24 6 2.6433 2.7451 7.3976 25 6 3.2482 2.9229 6.1394 26 6 4.5720 2.4788 5.9165 27 1 4.8965 2.2285 4.9172 28 6 5.4616 2.3635 6.9906 29 7 5.2893 3.0915 8.0637 30 14 6.8954 1.1700 6.8919 31 1 7.6822 1.2366 8.1495 32 1 6.3789 -0.2096 6.7042 33 1 7.7641 1.5339 5.7439 34 1 -0.3634 0.5138 0.8900 35 1 -0.3633 -1.0278 0.0005 36 1 -0.3634 0.5138 -0.8900 37 1 3.5592 -0.0142 -1.6632 38 1 4.1061 1.3990 -2.6353 39 1 1.9407 3.9721 -1.1629 40 1 3.2099 3.5853 -2.3816 41 1 3.8332 4.5322 1.2422 42 1 5.2904 3.4564 1.0705 43 1 4.2225 3.9456 3.8746 44 1 2.6833 4.5804 3.2451 45 1 0.6847 4.4602 4.5434 46 1 -0.3548 4.1431 6.7503 47 1 0.8893 3.0481 8.5688 48 1 3.1889 2.2688 8.1989 49 1 4.5970 3.7708 8.0829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804382617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = 77.363010 kcal Electronic energy + Delta-G solvation = -31036.549404 eV Core-core repulsion = 27126.532115 eV Total energy + Delta-G solvation = -3910.017289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.11894 -40.46477 -39.14525 -38.40289 -35.78543 -35.63193 -33.57506 -31.36955 -31.15960 -30.21509 -29.11611 -28.09940 -27.27408 -26.63325 -26.18188 -22.89258 -22.70965 -21.59740 -21.21276 -20.62463 -19.75842 -19.51248 -17.83945 -17.81246 -17.42963 -16.88769 -16.70378 -16.52555 -16.12582 -15.91070 -15.66970 -15.51412 -15.18934 -15.02303 -14.45220 -14.31908 -14.08672 -13.89962 -13.72567 -13.69613 -13.50404 -13.02944 -12.89251 -12.72738 -12.65134 -12.51639 -12.40246 -12.29792 -12.19170 -12.13760 -12.01137 -11.60095 -11.53804 -11.26755 -11.13801 -10.91661 -10.87780 -10.73880 -10.06576 -9.50154 -9.47570 -9.30396 -9.10308 -6.44091 0.84266 0.94097 1.43194 1.57394 1.59354 1.73203 1.76414 2.27310 2.34499 2.66301 2.81276 3.10732 3.27062 3.46009 3.49553 3.70045 3.81298 3.99388 4.00907 4.11383 4.17771 4.22973 4.24753 4.35689 4.40189 4.42719 4.44639 4.48619 4.54267 4.56818 4.63843 4.68216 4.73949 4.88207 4.89198 4.98632 5.00879 5.02249 5.10318 5.13604 5.19253 5.27384 5.27890 5.44714 5.45608 5.74338 5.79440 5.93280 5.99845 6.06904 6.24639 6.37429 6.42050 6.81810 6.96790 7.22035 8.04317 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003832 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.566825 B = 7305.939605 C = 8293.996137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.081 3.919 4 H 0.035 0.965 5 C 0.119 3.881 6 H 0.067 0.933 7 C -0.087 4.087 8 H 0.140 0.860 9 C -0.103 4.103 10 C -0.123 4.123 11 H 0.130 0.870 12 C -0.021 4.021 13 C -0.272 4.272 14 H 0.095 0.905 15 C 0.174 3.826 16 N -0.656 5.656 17 C 0.518 3.482 18 O -0.579 6.579 19 C -0.059 4.059 20 C -0.193 4.193 21 C -0.081 4.081 22 C -0.250 4.250 23 C -0.096 4.096 24 C -0.245 4.245 25 C 0.086 3.914 26 C -0.540 4.540 27 H 0.063 0.937 28 C 0.007 3.993 29 N -0.816 5.816 30 Si 1.106 2.894 31 H -0.265 1.265 32 H -0.279 1.279 33 H -0.251 1.251 34 H 0.020 0.980 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 2.256 -23.339 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.022 3.978 4 H 0.053 0.947 5 C 0.018 3.982 6 H 0.085 0.915 7 C -0.106 4.106 8 H 0.158 0.842 9 C -0.141 4.141 10 C -0.141 4.141 11 H 0.148 0.852 12 C -0.058 4.058 13 C -0.291 4.291 14 H 0.112 0.888 15 C 0.057 3.943 16 N -0.396 5.396 17 C 0.309 3.691 18 O -0.458 6.458 19 C -0.098 4.098 20 C -0.195 4.195 21 C -0.099 4.099 22 C -0.269 4.269 23 C -0.114 4.114 24 C -0.264 4.264 25 C 0.084 3.916 26 C -0.569 4.569 27 H 0.081 0.919 28 C -0.210 4.210 29 N -0.439 5.439 30 Si 0.924 3.076 31 H -0.190 1.190 32 H -0.205 1.205 33 H -0.175 1.175 34 H 0.039 0.961 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.500 0.969 -22.003 22.030 hybrid contribution -2.057 0.276 0.538 2.144 sum -2.557 1.245 -21.465 21.652 Atomic orbital electron populations 1.22904 0.79944 1.03752 1.00053 1.87886 1.21040 1.28204 1.95043 1.24369 0.93089 0.83796 0.96536 0.94741 1.24337 0.95321 0.88334 0.90247 0.91451 1.25309 0.98312 0.95138 0.91799 0.84196 1.23365 0.93711 0.99601 0.97389 1.25162 0.99201 0.96081 0.93679 0.85231 1.21139 0.93590 0.93932 0.97183 1.23781 1.03629 1.01139 1.00562 0.88822 1.21534 0.96803 0.89168 0.86827 1.52897 1.55903 1.17831 1.12950 1.21225 0.77642 0.89887 0.80384 1.90662 1.44265 1.40000 1.70905 1.20217 1.02830 0.94686 0.92077 1.19521 0.96617 1.07681 0.95670 1.20773 0.93919 0.98620 0.96576 1.20700 1.00682 1.11117 0.94439 1.20907 0.94178 0.97895 0.98437 1.21144 0.96675 1.09822 0.98779 1.17770 0.93513 0.88665 0.91663 1.20511 0.96819 1.42403 0.97135 0.91870 1.28200 1.03861 0.98152 0.90767 1.70551 1.29709 1.14235 1.29437 0.83153 0.72390 0.73797 0.78286 1.18972 1.20521 1.17496 0.96141 0.88280 0.91527 0.91629 0.87432 0.90631 0.87805 0.87185 0.87581 0.88705 0.87312 0.86572 0.86237 0.87104 0.89797 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.83 113.37 1.23 1.92 16 2 O -0.40 -11.91 10.31 -148.98 -1.54 -13.44 16 3 C 0.08 2.15 2.06 33.10 0.07 2.22 16 4 H 0.03 1.07 7.16 -2.51 -0.02 1.05 16 5 C 0.12 3.55 4.19 47.56 0.20 3.75 16 6 H 0.07 2.51 8.18 -2.00 -0.02 2.50 16 7 C -0.09 -1.67 5.63 -5.43 -0.03 -1.70 16 8 H 0.14 2.30 8.17 -2.21 -0.02 2.28 16 9 C -0.10 -1.59 6.34 33.45 0.21 -1.38 16 10 C -0.12 -2.00 5.10 -5.65 -0.03 -2.03 16 11 H 0.13 1.66 8.17 -2.21 -0.02 1.64 16 12 C -0.02 -0.27 6.51 30.98 0.20 -0.07 16 13 C -0.27 -4.79 5.51 -11.64 -0.06 -4.85 16 14 H 0.10 2.20 1.59 -122.41 -0.19 2.01 16 15 C 0.17 3.61 7.08 84.26 0.60 4.21 16 16 N -0.66 -20.95 2.47 -842.97 -2.08 -23.03 16 17 C 0.52 21.94 7.52 87.66 0.66 22.59 16 18 O -0.58 -31.17 16.42 -3.02 -0.05 -31.22 16 19 C -0.06 -2.37 4.21 29.10 0.12 -2.25 16 20 C -0.19 -9.62 4.43 -19.40 -0.09 -9.71 16 21 C -0.08 -3.72 9.66 22.22 0.21 -3.51 16 22 C -0.25 -11.52 10.05 22.46 0.23 -11.29 16 23 C -0.10 -4.76 10.02 22.22 0.22 -4.54 16 24 C -0.24 -13.74 7.95 22.73 0.18 -13.56 16 25 C 0.09 4.87 5.30 -21.29 -0.11 4.76 16 26 C -0.54 -30.32 8.08 23.46 0.19 -30.13 16 27 H 0.06 3.53 6.72 -2.91 -0.02 3.51 16 28 C 0.01 0.36 4.94 85.26 0.42 0.78 16 29 N -0.82 -45.52 12.32 21.83 0.27 -45.25 16 30 Si 1.11 46.07 30.00 68.60 2.06 48.13 16 31 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 32 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 33 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 34 H 0.02 0.55 8.08 -2.39 -0.02 0.53 16 35 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.20 8.11 -2.38 -0.02 1.18 16 38 H 0.11 1.08 8.13 -2.36 -0.02 1.06 16 39 H 0.08 0.95 8.17 -2.22 -0.02 0.93 16 40 H 0.10 0.85 8.16 -2.23 -0.02 0.83 16 41 H 0.11 1.91 7.55 -2.84 -0.02 1.89 16 42 H 0.11 1.92 7.94 -2.87 -0.02 1.90 16 43 H 0.09 3.83 7.05 -2.39 -0.02 3.81 16 44 H 0.11 3.48 7.83 -2.39 -0.02 3.46 16 45 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 46 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 47 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 48 H 0.08 4.93 6.49 -2.91 -0.02 4.91 16 49 H 0.28 16.45 6.69 -92.70 -0.62 15.83 16 Total: -1.00 -76.84 382.89 4.00 -72.84 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.91 Total: 36.77 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 4.42 Total: -44.79 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.81 Total: -68.29 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.58 Total: -44.67 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.06 Total: 48.13 kcal Total: -76.84 4.00 -72.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804382617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.203 kcal (2) G-P(sol) polarization free energy of solvation -76.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds