Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47146 * 2 1 4 4 C 1.46900 * 111.00051 * 199.96669 * 3 2 1 5 5 C 1.50706 * 109.46914 * 66.04449 * 4 3 2 6 6 H 1.07997 * 119.99827 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99875 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47323 * 89.99913 * 9 7 5 11 11 H 1.48502 * 109.46998 * 209.99869 * 9 7 5 12 12 H 1.48498 * 109.47328 * 329.99631 * 9 7 5 13 13 C 1.46899 * 111.00043 * 76.01442 * 3 2 1 14 14 N 1.46501 * 109.46709 * 209.14051 * 13 3 2 15 15 C 1.33798 * 124.17518 * 84.18331 * 14 13 3 16 16 O 1.21535 * 123.76867 * 0.02931 * 15 14 13 17 17 N 1.34521 * 112.45545 * 180.02562 * 15 14 13 18 18 C 1.47307 * 106.62425 * 359.97438 * 17 15 14 19 19 C 1.52994 * 110.60140 * 241.31944 * 18 17 15 20 20 C 1.53005 * 110.59712 * 118.52441 * 18 17 15 21 21 C 1.52999 * 109.46929 * 61.45978 * 20 18 17 22 22 C 1.50701 * 109.46703 * 179.97438 * 21 20 18 23 23 O 1.20826 * 120.00237 * 359.97438 * 22 21 20 24 24 O 1.34232 * 120.00032 * 179.97438 * 22 21 20 25 25 C 1.45201 * 117.00412 * 179.97438 * 24 22 21 26 26 C 1.34770 * 124.18168 * 264.21244 * 14 13 3 27 27 O 1.21235 * 127.15339 * 0.02562 * 26 14 13 28 28 H 1.08999 * 109.46979 * 174.83935 * 1 2 3 29 29 H 1.09004 * 109.46978 * 294.83923 * 1 2 3 30 30 H 1.09000 * 109.47086 * 54.83696 * 1 2 3 31 31 H 1.08996 * 109.47429 * 239.99842 * 2 1 3 32 32 H 1.09010 * 109.47207 * 119.99494 * 2 1 3 33 33 H 1.08997 * 109.47613 * 186.04169 * 4 3 2 34 34 H 1.09001 * 109.47267 * 306.05056 * 4 3 2 35 35 H 0.96999 * 119.99984 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47280 * 89.14818 * 13 3 2 37 37 H 1.08997 * 109.47052 * 329.14241 * 13 3 2 38 38 H 0.97000 * 126.68683 * 180.02562 * 17 15 14 39 39 H 1.08996 * 109.47209 * 297.16947 * 19 18 17 40 40 H 1.08996 * 109.47179 * 57.17154 * 19 18 17 41 41 H 1.08998 * 109.47071 * 177.17023 * 19 18 17 42 42 H 1.08998 * 109.47656 * 301.45246 * 20 18 17 43 43 H 1.09002 * 109.46940 * 181.45579 * 20 18 17 44 44 H 1.08993 * 109.46928 * 299.99397 * 21 20 18 45 45 H 1.08998 * 109.47317 * 59.99703 * 21 20 18 46 46 H 1.08993 * 109.46822 * 300.00483 * 25 24 22 47 47 H 1.09002 * 109.46580 * 59.99901 * 25 24 22 48 48 H 1.08996 * 109.47008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4104 1.4517 -0.4683 5 6 3.4716 1.0497 -1.9195 6 1 2.5678 0.7721 -2.4414 7 6 4.6815 1.0354 -2.5804 8 7 5.7823 1.3721 -1.9444 9 14 4.7572 0.5379 -4.3793 10 1 4.5870 1.7407 -5.2332 11 1 6.0727 -0.0894 -4.6644 12 1 3.6723 -0.4334 -4.6704 13 6 1.8826 1.9918 1.3308 14 7 1.6957 3.4381 1.1910 15 6 0.5152 4.0247 0.9617 16 8 -0.5303 3.4160 0.8454 17 7 0.6150 5.3634 0.8744 18 6 2.0369 5.6938 1.0714 19 6 2.2180 6.5775 2.3072 20 6 2.6063 6.3836 -0.1699 21 6 1.8537 7.6928 -0.4160 22 6 2.4150 8.3726 -1.6383 23 8 3.3239 7.8625 -2.2495 24 8 1.9051 9.5447 -2.0481 25 6 2.4951 10.1423 -3.2326 26 6 2.6916 4.3421 1.2768 27 8 3.8666 4.1202 1.4763 28 1 -0.3633 -1.0235 -0.0924 29 1 -0.3633 0.4317 0.9326 30 1 -0.3633 0.5918 -0.8401 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.7827 2.4701 -0.3574 34 1 4.0257 0.7734 0.1228 35 1 6.6336 1.3616 -2.4093 36 1 2.7828 1.7966 1.9136 37 1 1.0200 1.5614 1.8393 38 1 -0.1086 5.9891 0.7137 39 1 1.6965 7.5228 2.1574 40 1 1.8071 6.0702 3.1800 41 1 3.2794 6.7690 2.4645 42 1 2.4905 5.7298 -1.0343 43 1 3.6640 6.5963 -0.0144 44 1 0.7961 7.4802 -0.5716 45 1 1.9696 8.3466 0.4484 46 1 3.5542 10.3293 -3.0560 47 1 2.3821 9.4625 -4.0771 48 1 1.9921 11.0837 -3.4536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811734500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = -148.512358 kcal Electronic energy + Delta-G solvation = -31668.239378 eV Core-core repulsion = 27337.578135 eV Total energy + Delta-G solvation = -4330.661243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.56904 -41.50461 -39.67115 -38.96609 -37.91578 -37.43577 -36.07702 -34.78797 -33.59956 -31.58959 -31.06057 -29.42111 -28.74164 -27.11798 -26.27342 -24.76706 -24.33245 -23.00471 -21.96160 -21.40592 -21.16253 -19.10365 -18.80118 -18.49111 -17.80329 -17.72177 -17.63800 -17.46436 -16.74328 -16.63349 -16.59029 -15.96580 -15.86557 -15.56014 -15.20699 -15.02869 -14.69293 -14.45667 -14.32077 -14.13321 -14.01960 -13.80402 -13.42237 -13.37523 -13.33148 -12.94985 -12.84951 -12.75051 -12.66709 -12.63038 -12.42069 -12.16560 -12.00926 -11.80385 -11.77718 -11.71581 -11.60427 -11.46294 -11.12840 -10.92311 -10.65267 -10.47587 -9.24502 -8.24187 -6.35366 0.60477 1.14799 1.21017 1.34541 1.36902 1.47738 1.73787 2.03255 2.16314 2.35327 2.83780 3.07510 3.21277 3.38353 3.62952 3.66939 3.83643 4.05613 4.12607 4.16094 4.19991 4.31925 4.32203 4.40934 4.43244 4.52744 4.59011 4.70894 4.71820 4.74204 4.77265 4.83432 4.95866 5.01115 5.06501 5.11265 5.21977 5.28604 5.39010 5.45083 5.58463 5.88241 5.96341 6.09076 6.23910 6.39980 6.48699 6.70888 6.80061 7.20179 7.33990 8.86516 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.004357 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.491738 B = 6424.250289 C = 8494.071765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.061 3.939 3 N -0.556 5.556 4 C 0.215 3.785 5 C -0.525 4.525 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.260 1.260 13 C 0.282 3.718 14 N -0.571 5.571 15 C 0.707 3.293 16 O -0.566 6.566 17 N -0.698 5.698 18 C 0.141 3.859 19 C -0.144 4.144 20 C -0.102 4.102 21 C -0.099 4.099 22 C 0.457 3.543 23 O -0.549 6.549 24 O -0.357 6.357 25 C 0.027 3.973 26 C 0.515 3.485 27 O -0.495 6.495 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.002 0.998 34 H -0.037 1.037 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.454 0.546 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.136 0.864 45 H 0.160 0.840 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.586 18.191 8.058 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 N -0.282 5.282 4 C 0.089 3.911 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.071 3.929 14 N -0.317 5.317 15 C 0.408 3.592 16 O -0.441 6.441 17 N -0.365 5.365 18 C 0.051 3.949 19 C -0.202 4.202 20 C -0.141 4.141 21 C -0.136 4.136 22 C 0.302 3.698 23 O -0.439 6.439 24 O -0.273 6.273 25 C -0.066 4.066 26 C 0.303 3.697 27 O -0.366 6.366 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.020 0.980 34 H -0.019 1.019 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.302 0.698 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.154 0.846 45 H 0.177 0.823 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.311 17.785 7.571 22.917 hybrid contribution 1.297 -0.851 -0.986 1.838 sum -11.014 16.934 6.585 21.247 Atomic orbital electron populations 1.21644 0.93279 1.01762 1.01644 1.21985 0.96538 0.87164 1.00947 1.61727 1.23164 1.19895 1.23438 1.19373 0.82731 0.94408 0.94633 1.21407 0.93455 1.45227 0.96279 0.92039 1.25904 0.95115 0.95286 1.03150 1.70118 0.99059 1.49271 1.38559 0.85432 0.77874 0.78544 0.79097 1.20448 1.20360 1.18393 1.21955 1.02076 0.77497 0.91387 1.46623 1.09737 1.09557 1.65781 1.15910 0.82883 0.83505 0.76892 1.90945 1.29553 1.67597 1.56025 1.45467 1.09380 1.05202 1.76477 1.21392 0.81130 0.92456 0.99956 1.22154 1.05235 1.00161 0.92612 1.21495 1.01327 0.96268 0.95034 1.21457 1.02495 0.94899 0.94738 1.24315 0.80071 0.79207 0.86240 1.90766 1.30564 1.65294 1.57232 1.86479 1.59917 1.35335 1.45558 1.23519 0.99600 0.99211 0.84269 1.21535 0.85474 0.88612 0.74106 1.90816 1.15636 1.84337 1.45785 0.90435 0.92617 0.93915 0.91430 0.94404 0.97963 1.01924 0.92741 0.92282 0.86572 0.69785 0.85644 0.90676 0.89608 0.93416 0.89562 0.84637 0.82256 0.92214 0.92873 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.97 71.98 0.72 -3.41 16 2 C 0.06 2.44 5.45 86.30 0.47 2.91 16 3 N -0.56 -25.49 4.52 -913.15 -4.13 -29.62 16 4 C 0.21 12.15 4.55 85.56 0.39 12.54 16 5 C -0.53 -31.41 8.23 25.60 0.21 -31.20 16 6 H 0.06 3.62 7.31 -2.91 -0.02 3.60 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -59.23 13.29 21.45 0.28 -58.94 16 9 Si 0.97 46.74 29.54 68.60 2.03 48.76 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.28 10.96 5.31 170.81 0.91 11.86 16 14 N -0.57 -20.45 2.85 -783.55 -2.23 -22.68 16 15 C 0.71 22.27 8.63 179.44 1.55 23.81 16 16 O -0.57 -20.66 17.57 -3.82 -0.07 -20.73 16 17 N -0.70 -14.14 5.52 -439.83 -2.43 -16.57 16 18 C 0.14 3.11 1.01 2.98 0.00 3.11 16 19 C -0.14 -1.75 8.66 71.98 0.62 -1.13 16 20 C -0.10 -2.44 3.85 30.60 0.12 -2.32 16 21 C -0.10 -1.33 5.37 29.85 0.16 -1.17 16 22 C 0.46 9.92 7.96 71.24 0.57 10.48 16 23 O -0.55 -17.81 15.73 21.97 0.35 -17.46 16 24 O -0.36 -6.26 10.57 -51.44 -0.54 -6.81 16 25 C 0.03 0.40 10.56 113.37 1.20 1.59 16 26 C 0.52 18.08 6.42 87.94 0.57 18.64 16 27 O -0.50 -21.54 16.81 -2.89 -0.05 -21.59 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.73 6.96 -2.38 -0.02 1.71 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 3.00 6.58 -2.39 -0.02 2.98 16 32 H 0.04 1.38 8.00 -2.38 -0.02 1.36 16 33 H 0.00 0.14 6.56 -2.39 -0.02 0.13 16 34 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 35 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 36 H 0.06 2.39 7.60 -2.39 -0.02 2.37 16 37 H 0.12 3.90 6.38 -2.39 -0.02 3.88 16 38 H 0.45 5.39 8.26 -92.71 -0.77 4.62 16 39 H 0.13 0.39 6.57 -2.39 -0.02 0.38 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 43 H 0.09 2.32 8.10 -2.39 -0.02 2.30 16 44 H 0.14 1.11 7.21 -2.39 -0.02 1.09 16 45 H 0.16 0.71 6.55 -2.39 -0.02 0.70 16 46 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 47 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 48 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -88.94 396.69 1.37 -87.57 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.22 Total: 11.64 kcal Atomic # 6 Polarization: 38.49 SS G_CDS: 7.94 Total: 46.43 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -8.50 Total: -127.82 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: -0.31 Total: -66.59 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -88.94 1.37 -87.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811734500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.940 kcal (2) G-P(sol) polarization free energy of solvation -88.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds