Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.46908 * 2 1 4 4 C 1.34540 * 117.00017 * 180.02562 * 3 2 1 5 5 O 1.21252 * 119.99516 * 359.97438 * 4 3 2 6 6 C 1.49432 * 120.00054 * 180.02562 * 4 3 2 7 7 O 1.21348 * 120.00115 * 5.97691 * 6 4 3 8 8 N 1.34779 * 119.99984 * 185.97593 * 6 4 3 9 9 C 1.46960 * 120.59106 * 174.69670 * 8 6 4 10 10 C 1.53373 * 108.63129 * 235.24689 * 9 8 6 11 11 N 1.46966 * 108.63477 * 310.57804 * 10 9 8 12 12 C 1.34778 * 120.59117 * 235.20179 * 11 10 9 13 13 O 1.21280 * 120.00487 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99868 * 179.97438 * 12 11 10 15 15 H 1.08994 * 109.46902 * 40.00298 * 14 12 11 16 16 N 1.46902 * 109.47249 * 160.00305 * 14 12 11 17 17 C 1.53004 * 109.46950 * 280.00240 * 14 12 11 18 18 C 1.52998 * 109.46916 * 175.00174 * 17 14 12 19 19 C 1.50703 * 109.47273 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99334 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99989 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99573 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47434 * 90.00520 * 23 21 19 25 25 H 1.48507 * 109.47212 * 209.99937 * 23 21 19 26 26 H 1.48501 * 109.47514 * 329.99839 * 23 21 19 27 27 C 1.46964 * 118.81235 * 55.47628 * 11 10 9 28 28 C 1.46958 * 120.59514 * 354.71559 * 8 6 4 29 29 H 1.09009 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47126 * 299.99589 * 1 2 3 31 31 H 1.08998 * 109.47107 * 59.99986 * 1 2 3 32 32 H 1.09001 * 109.47126 * 240.00411 * 2 1 3 33 33 H 1.08998 * 109.47107 * 120.00014 * 2 1 3 34 34 H 1.08998 * 109.61646 * 115.50631 * 9 8 6 35 35 H 1.08998 * 109.61381 * 354.98773 * 9 8 6 36 36 H 1.09004 * 109.61248 * 190.83038 * 10 9 8 37 37 H 1.09003 * 109.61193 * 70.32316 * 10 9 8 38 38 H 1.00899 * 110.99840 * 296.04740 * 16 14 12 39 39 H 1.00896 * 110.99647 * 59.99930 * 16 14 12 40 40 H 1.08995 * 109.47200 * 54.99729 * 17 14 12 41 41 H 1.09002 * 109.46895 * 294.99516 * 17 14 12 42 42 H 1.08995 * 109.47550 * 59.99769 * 18 17 14 43 43 H 1.09002 * 109.46801 * 299.99399 * 18 17 14 44 44 H 0.97005 * 119.99782 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.60591 * 64.26854 * 27 11 10 46 46 H 1.09003 * 109.60510 * 184.77804 * 27 11 10 47 47 H 1.09003 * 109.61163 * 244.49932 * 28 8 6 48 48 H 1.09004 * 109.60918 * 5.00429 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3478 1.5453 -0.0005 5 8 4.0864 0.5837 -0.0005 6 6 3.9189 2.9262 0.0000 7 8 3.1850 3.8863 0.1104 8 7 5.2491 3.1053 -0.1220 9 6 5.8141 4.4569 -0.2397 10 6 6.6633 4.5237 -1.5151 11 7 7.5747 3.3709 -1.5334 12 6 8.9048 3.5500 -1.6564 13 8 9.3596 4.6702 -1.7527 14 6 9.8272 2.3583 -1.6730 15 1 9.3745 1.5566 -2.2564 16 7 11.1100 2.7404 -2.2785 17 6 10.0632 1.8760 -0.2403 18 6 10.8972 0.5936 -0.2648 19 6 11.1291 0.1181 1.1464 20 1 10.7226 0.6752 1.9775 21 6 11.8601 -1.0281 1.3763 22 7 12.3555 -1.7061 0.3642 23 14 12.1481 -1.6169 3.1254 24 1 11.0511 -2.5342 3.5260 25 1 13.4456 -2.3357 3.1985 26 1 12.1768 -0.4493 4.0425 27 6 7.0092 2.0190 -1.4213 28 6 6.1605 1.9526 -0.1403 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 6.4394 4.6688 0.6276 35 1 5.0069 5.1869 -0.2990 36 1 7.2418 5.4475 -1.5215 37 1 6.0134 4.4901 -2.3895 38 1 10.9897 3.0016 -3.2457 39 1 11.5498 3.4827 -1.7555 40 1 9.1045 1.6769 0.2386 41 1 10.5959 2.6452 0.3189 42 1 11.8559 0.7927 -0.7436 43 1 10.3645 -0.1756 -0.8240 44 1 12.8702 -2.5123 0.5260 45 1 6.3833 1.8113 -2.2892 46 1 7.8162 1.2884 -1.3657 47 1 6.8104 1.9862 0.7341 48 1 5.5820 1.0287 -0.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818217329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = -124.734452 kcal Electronic energy + Delta-G solvation = -30816.814950 eV Core-core repulsion = 26487.184795 eV Total energy + Delta-G solvation = -4329.630156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65475 -40.41214 -39.42328 -37.75510 -37.02859 -35.39261 -34.21612 -32.85246 -32.18922 -31.74593 -30.14096 -28.64731 -26.83594 -25.82957 -24.36350 -23.71898 -23.18121 -22.12283 -20.95095 -20.29498 -19.06956 -18.30782 -17.81974 -17.33645 -17.05687 -16.57187 -16.40823 -16.00023 -15.75310 -15.56153 -15.24856 -15.14427 -14.53786 -14.47258 -14.28617 -14.09737 -13.77077 -13.52356 -13.31905 -13.14612 -12.84814 -12.49432 -12.40551 -12.35664 -12.13098 -12.03455 -11.81764 -11.68269 -11.53182 -11.25127 -11.06102 -10.91447 -10.70295 -10.57538 -10.16468 -9.91378 -9.82674 -9.53360 -9.41076 -9.03102 -8.61091 -8.39011 -8.24151 -5.96333 -3.98602 0.68474 1.40092 2.53600 2.66317 2.73105 3.13393 3.32899 3.39820 3.42890 3.81718 4.40386 4.46575 4.46951 4.48670 4.54329 4.71060 4.78979 4.87608 4.93723 4.97749 5.02534 5.11531 5.21453 5.31963 5.32458 5.39107 5.41539 5.48146 5.51436 5.58922 5.68943 5.75347 5.87735 6.09353 6.30148 6.38576 6.59523 6.63546 6.92445 7.02004 7.22801 7.40593 7.43738 7.72171 7.74643 7.92232 8.09596 8.15757 8.45053 9.09157 9.64879 11.14486 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009096 B = 0.003180 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.626585 B = 8803.363145 C =11087.028949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.327 6.327 4 C 0.465 3.535 5 O -0.466 6.466 6 C 0.532 3.468 7 O -0.496 6.496 8 N -0.573 5.573 9 C 0.097 3.903 10 C 0.096 3.904 11 N -0.616 5.616 12 C 0.487 3.513 13 O -0.551 6.551 14 C 0.077 3.923 15 H 0.099 0.901 16 N -0.806 5.806 17 C -0.097 4.097 18 C 0.032 3.968 19 C -0.522 4.522 20 H 0.052 0.948 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.092 3.908 28 C 0.026 3.974 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.334 0.666 39 H 0.348 0.652 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.907 6.387 -4.619 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.241 6.241 4 C 0.304 3.696 5 O -0.354 6.354 6 C 0.314 3.686 7 O -0.370 6.370 8 N -0.309 5.309 9 C -0.025 4.025 10 C -0.027 4.027 11 N -0.350 5.350 12 C 0.275 3.725 13 O -0.429 6.429 14 C -0.039 4.039 15 H 0.117 0.883 16 N -0.334 5.334 17 C -0.135 4.135 18 C -0.005 4.005 19 C -0.561 4.561 20 H 0.070 0.930 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.716 3.284 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.031 4.031 28 C -0.095 4.095 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.105 0.895 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.519 6.274 -4.496 22.861 hybrid contribution -0.202 0.337 0.852 0.938 sum -21.721 6.611 -3.644 22.996 Atomic orbital electron populations 1.21828 0.91982 1.03323 1.03905 1.23306 0.95952 0.78995 1.03452 1.86648 1.21890 1.33354 1.82195 1.23587 0.81930 0.90858 0.73192 1.90392 1.57684 1.43266 1.44072 1.18739 0.83036 0.87013 0.79826 1.90812 1.58453 1.40676 1.47080 1.47896 1.04379 1.09318 1.69279 1.22242 0.98322 0.82859 0.99058 1.21942 0.92346 0.91621 0.96835 1.48282 1.06306 1.07021 1.73439 1.22854 0.82535 0.93039 0.74088 1.90637 1.75610 1.26185 1.50462 1.21893 0.88111 0.93003 1.00859 0.88342 1.59008 1.20526 1.47670 1.06194 1.21712 1.00893 1.01258 0.89621 1.19012 0.95636 0.89253 0.96601 1.21251 1.33203 1.08872 0.92745 0.93018 1.24976 0.95811 0.96801 0.96644 1.69969 1.35832 1.17219 1.30078 0.86668 0.77552 0.78837 0.85352 1.20747 1.21273 1.19998 1.22359 0.98922 0.84256 0.97589 1.23969 0.94403 0.92135 0.98957 0.89739 0.91195 0.91239 0.90369 0.90335 0.89752 0.87493 0.87502 0.91130 0.85425 0.83789 0.92760 0.92783 0.94652 0.96854 0.93077 0.90937 0.86762 0.89488 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.39 6.19 37.16 0.23 0.62 16 3 O -0.33 -3.27 10.09 -45.06 -0.45 -3.72 16 4 C 0.47 5.01 7.95 35.40 0.28 5.29 16 5 O -0.47 -5.24 12.80 -19.07 -0.24 -5.48 16 6 C 0.53 6.20 7.75 -11.59 -0.09 6.11 16 7 O -0.50 -6.83 16.39 -7.57 -0.12 -6.95 16 8 N -0.57 -6.21 2.95 -172.74 -0.51 -6.72 16 9 C 0.10 0.98 6.58 -3.60 -0.02 0.95 16 10 C 0.10 1.02 6.59 -3.60 -0.02 1.00 16 11 N -0.62 -7.62 2.94 -172.21 -0.51 -8.13 16 12 C 0.49 7.39 6.94 -10.98 -0.08 7.31 16 13 O -0.55 -9.71 15.66 5.56 0.09 -9.62 16 14 C 0.08 1.24 2.29 -68.86 -0.16 1.08 16 15 H 0.10 1.49 6.75 -51.93 -0.35 1.14 16 16 N -0.81 -13.17 8.44 -5.65 -0.05 -13.22 16 17 C -0.10 -1.85 4.46 -26.73 -0.12 -1.97 16 18 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.09 1.01 5.94 -3.37 -0.02 0.99 16 28 C 0.03 0.29 6.46 -3.37 -0.02 0.27 16 29 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.00 7.02 -51.93 -0.36 0.64 16 36 H 0.11 1.22 6.99 -51.93 -0.36 0.85 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.33 4.74 9.06 -39.29 -0.36 4.38 16 39 H 0.35 5.79 8.58 -39.29 -0.34 5.45 16 40 H 0.05 0.97 6.89 -51.93 -0.36 0.61 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.11 1.35 4.87 -51.93 -0.25 1.09 16 47 H 0.09 1.03 8.02 -51.93 -0.42 0.61 16 48 H 0.17 1.82 3.67 -57.28 -0.21 1.61 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -33.47 391.36 -7.55 -41.02 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.18 Total: 7.35 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.18 Total: 8.85 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.33 Total: -53.72 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.74 Total: -25.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.47 -7.55 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818217329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.715 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds