Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86793 * 120.00071 * 2 1 4 4 H 1.48504 * 109.47266 * 269.99614 * 3 2 1 5 5 H 1.48499 * 109.47428 * 29.99967 * 3 2 1 6 6 H 1.48501 * 109.47300 * 150.00104 * 3 2 1 7 7 C 1.39957 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99674 * 169.55287 * 7 2 1 9 9 C 1.41396 * 119.99627 * 349.55309 * 7 2 1 10 10 C 1.40736 * 120.24563 * 330.15192 * 9 7 2 11 11 C 1.37597 * 119.74323 * 180.32612 * 10 9 7 12 12 C 1.38656 * 120.24840 * 359.65524 * 11 10 9 13 13 C 1.38617 * 120.50324 * 0.02725 * 12 11 10 14 14 C 1.37639 * 120.24611 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.12944 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47099 * 264.99687 * 15 14 13 17 17 O 1.21284 * 119.99741 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00583 * 179.97438 * 16 15 14 19 19 C 1.47709 * 134.43307 * 4.84062 * 18 16 15 20 20 C 1.53276 * 85.91322 * 204.17779 * 19 18 16 21 21 C 1.53818 * 114.66944 * 220.84787 * 20 19 18 22 22 C 1.55459 * 101.99063 * 250.17171 * 21 20 19 23 23 C 1.55017 * 101.06245 * 326.45765 * 22 21 20 24 24 O 1.42519 * 115.51830 * 93.67759 * 20 19 18 25 25 C 1.47709 * 134.44218 * 184.87081 * 18 16 15 26 26 H 1.08994 * 113.80262 * 270.07210 * 25 18 16 27 27 C 1.52998 * 113.90469 * 41.56336 * 25 18 16 28 28 C 1.53004 * 117.49396 * 222.02731 * 27 25 18 29 29 C 1.53006 * 117.49734 * 153.37585 * 27 25 18 30 30 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.13218 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.87680 * 179.68371 * 11 10 9 33 33 H 1.08003 * 119.75062 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.87724 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.47752 * 144.99725 * 15 14 13 36 36 H 1.08999 * 109.46898 * 24.99314 * 15 14 13 37 37 H 1.08996 * 113.80036 * 89.92552 * 19 18 16 38 38 H 1.09003 * 113.80106 * 318.42603 * 19 18 16 39 39 H 1.08998 * 110.90919 * 132.01484 * 21 20 19 40 40 H 1.09005 * 110.96395 * 8.35053 * 21 20 19 41 41 H 1.08994 * 111.11546 * 208.49430 * 22 21 20 42 42 H 1.09004 * 111.10960 * 84.41499 * 22 21 20 43 43 H 1.08997 * 110.30247 * 154.99733 * 23 22 21 44 44 H 1.08997 * 110.29717 * 277.05174 * 23 22 21 45 45 H 1.08996 * 115.55859 * 7.69960 * 27 25 18 46 46 H 1.09004 * 117.50373 * 0.02562 * 28 27 25 47 47 H 1.09007 * 117.49705 * 145.01921 * 28 27 25 48 48 H 1.09001 * 117.49623 * 214.97834 * 29 27 25 49 49 H 1.09003 * 117.49600 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2121 0.0005 8 1 3.0745 -1.2198 -0.1691 9 6 1.3185 -2.4263 0.2231 10 6 0.1623 -2.4482 1.0251 11 6 -0.4968 -3.6368 1.2404 12 6 -0.0298 -4.8086 0.6647 13 6 1.1042 -4.7977 -0.1323 14 6 1.7800 -3.6205 -0.3604 15 6 3.0130 -3.6118 -1.2269 16 6 4.2386 -3.7269 -0.3576 17 8 4.1224 -3.8075 0.8469 18 7 5.4640 -3.7402 -0.9187 19 6 5.9727 -3.5750 -2.2956 20 6 7.1911 -4.3768 -1.8244 21 6 8.5420 -3.8575 -2.3453 22 6 8.9532 -4.9741 -3.3457 23 6 8.3604 -6.2276 -2.6525 24 8 7.1290 -5.7815 -2.0572 25 6 6.8356 -3.9263 -0.4031 26 1 7.3217 -2.9986 -0.1012 27 6 6.9590 -5.0342 0.6448 28 6 7.8385 -4.7569 1.8657 29 6 8.3157 -5.7280 0.7829 30 1 -0.4850 0.8400 0.0004 31 1 -0.2036 -1.5366 1.4739 32 1 -1.3814 -3.6569 1.8596 33 1 -0.5536 -5.7369 0.8387 34 1 1.4593 -5.7164 -0.5753 35 1 3.0540 -2.6801 -1.7912 36 1 2.9773 -4.4539 -1.9179 37 1 6.2009 -2.5423 -2.5592 38 1 5.3745 -4.0862 -3.0498 39 1 9.2659 -3.7753 -1.5346 40 1 8.4218 -2.9022 -2.8563 41 1 10.0376 -5.0472 -3.4285 42 1 8.4973 -4.8133 -4.3227 43 1 8.1643 -7.0087 -3.3869 44 1 9.0426 -6.5934 -1.8851 45 1 6.0660 -5.6408 0.7952 46 1 8.3289 -3.7851 1.9226 47 1 7.5242 -5.1814 2.8192 48 1 8.3151 -6.7909 1.0245 49 1 9.1202 -5.3953 0.1270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819262974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = -14.261329 kcal Electronic energy + Delta-G solvation = -30502.970876 eV Core-core repulsion = 26588.980457 eV Total energy + Delta-G solvation = -3913.990419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12496 -40.21622 -39.01694 -38.00630 -37.00118 -35.49039 -33.48734 -33.04354 -31.38614 -30.78883 -28.62138 -27.61670 -27.00072 -26.06039 -23.37425 -22.89431 -22.84275 -22.26827 -21.69742 -20.95780 -19.63791 -19.05900 -18.01731 -17.60022 -17.30413 -16.82083 -16.55521 -16.31490 -16.18751 -15.89070 -15.55946 -15.28894 -15.25142 -14.74512 -14.42038 -14.33810 -14.02086 -13.93692 -13.59094 -13.52354 -13.34057 -12.89945 -12.78921 -12.74634 -12.69364 -12.56437 -12.49212 -12.42656 -12.17828 -12.12568 -11.90295 -11.61903 -11.36821 -11.33989 -11.25172 -11.06505 -10.99577 -10.52802 -10.30443 -9.63712 -9.23012 -9.16538 -8.56372 -6.33411 0.96199 1.09441 1.34012 1.46443 1.50696 1.79781 1.91591 2.20291 2.73368 2.79220 2.84935 3.34787 3.55051 3.67200 3.70740 3.78900 3.98353 4.03446 4.06454 4.18373 4.24536 4.28799 4.35306 4.44392 4.51311 4.56134 4.57892 4.65720 4.68398 4.71563 4.73247 4.75322 4.86757 4.91158 4.97043 4.99203 5.03442 5.08430 5.13469 5.18185 5.21149 5.32510 5.33860 5.37402 5.51312 5.75397 6.00941 6.14077 6.16882 6.20473 6.40310 6.70169 6.78409 6.98316 7.08020 7.37605 8.40251 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.003570 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.545190 B = 7841.388188 C = 8722.544605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.484 4.484 8 H 0.065 0.935 9 C 0.097 3.903 10 C -0.185 4.185 11 C -0.119 4.119 12 C -0.236 4.236 13 C -0.096 4.096 14 C -0.184 4.184 15 C -0.059 4.059 16 C 0.539 3.461 17 O -0.574 6.574 18 N -0.650 5.650 19 C 0.090 3.910 20 C 0.099 3.901 21 C -0.136 4.136 22 C -0.144 4.144 23 C 0.037 3.963 24 O -0.366 6.366 25 C 0.151 3.849 26 H 0.105 0.895 27 C -0.157 4.157 28 C -0.185 4.185 29 C -0.133 4.133 30 H 0.285 0.715 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.953 -6.354 -9.663 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.205 4.205 11 C -0.137 4.137 12 C -0.255 4.255 13 C -0.115 4.115 14 C -0.186 4.186 15 C -0.098 4.098 16 C 0.330 3.670 17 O -0.452 6.452 18 N -0.386 5.386 19 C -0.031 4.031 20 C 0.057 3.943 21 C -0.174 4.174 22 C -0.182 4.182 23 C -0.039 4.039 24 O -0.285 6.285 25 C 0.048 3.952 26 H 0.123 0.877 27 C -0.176 4.176 28 C -0.222 4.222 29 C -0.170 4.170 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.287 -6.377 -8.905 23.939 hybrid contribution -0.516 0.775 0.568 1.091 sum 20.770 -5.601 -8.337 23.072 Atomic orbital electron populations 1.69861 1.08696 1.30086 1.37441 1.26677 0.95566 1.04124 0.91586 0.85308 0.78734 0.76481 0.79819 1.17693 1.19136 1.19328 1.19546 0.95105 0.91423 1.45344 0.91723 1.17727 0.91661 0.92678 0.88467 1.21333 0.99850 0.96734 1.02569 1.20973 0.99269 0.93350 1.00092 1.20729 1.00757 0.97448 1.06567 1.20712 0.95823 0.96226 0.98690 1.19594 0.99527 0.94313 1.05122 1.20148 0.89330 1.03644 0.96724 1.20750 0.83769 0.74301 0.88169 1.90646 1.86482 1.51001 1.17104 1.50251 1.04301 1.72183 1.11877 1.23875 0.93206 1.01537 0.84528 1.23018 0.95804 0.83114 0.92345 1.23053 0.93459 1.00789 1.00051 1.23268 1.03177 0.92790 0.98939 1.23755 0.85311 0.97898 0.96911 1.88407 1.38094 1.20342 1.81609 1.22941 0.80808 0.96698 0.94756 0.87734 1.21870 0.95375 1.01160 0.99232 1.23100 1.03710 1.01838 0.93589 1.22908 0.95313 0.98051 1.00733 0.90425 0.88268 0.87313 0.86520 0.87205 0.88883 0.88361 0.86303 0.88831 0.88733 0.87574 0.87599 0.89656 0.89000 0.91188 0.91826 0.87636 0.89857 0.88579 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.62 10.90 21.83 0.24 -45.38 16 2 C 0.03 1.78 5.25 85.26 0.45 2.23 16 3 Si 0.98 40.18 29.57 68.60 2.03 42.21 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.48 -27.47 8.05 23.46 0.19 -27.28 16 8 H 0.06 3.63 6.79 -2.91 -0.02 3.61 16 9 C 0.10 5.61 5.54 -21.29 -0.12 5.49 16 10 C -0.19 -10.72 8.65 22.73 0.20 -10.52 16 11 C -0.12 -6.11 10.02 22.22 0.22 -5.89 16 12 C -0.24 -11.40 10.05 22.46 0.23 -11.18 16 13 C -0.10 -4.72 9.66 22.22 0.21 -4.50 16 14 C -0.18 -9.58 4.43 -19.41 -0.09 -9.67 16 15 C -0.06 -2.56 4.94 29.10 0.14 -2.42 16 16 C 0.54 23.87 7.50 87.66 0.66 24.53 16 17 O -0.57 -31.11 16.19 -3.04 -0.05 -31.16 16 18 N -0.65 -21.79 3.50 -828.61 -2.90 -24.68 16 19 C 0.09 2.02 8.08 86.24 0.70 2.72 16 20 C 0.10 1.91 1.31 -10.29 -0.01 1.90 16 21 C -0.14 -1.38 6.36 31.72 0.20 -1.18 16 22 C -0.14 -1.11 7.16 32.13 0.23 -0.88 16 23 C 0.04 0.47 7.79 72.67 0.57 1.03 16 24 O -0.37 -7.97 10.04 -148.98 -1.50 -9.47 16 25 C 0.15 4.05 3.99 44.85 0.18 4.22 16 26 H 0.11 2.55 8.07 -2.39 -0.02 2.53 16 27 C -0.16 -4.59 4.74 -10.79 -0.05 -4.64 16 28 C -0.19 -4.53 10.22 30.62 0.31 -4.22 16 29 C -0.13 -2.64 9.63 30.62 0.29 -2.35 16 30 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 31 H 0.10 5.95 6.30 -2.91 -0.02 5.94 16 32 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 33 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.09 3.99 7.15 -2.39 -0.02 3.98 16 36 H 0.10 3.66 8.05 -2.39 -0.02 3.64 16 37 H 0.12 2.05 7.91 -2.39 -0.02 2.03 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.09 0.78 7.83 -2.39 -0.02 0.77 16 40 H 0.11 0.77 7.78 -2.38 -0.02 0.76 16 41 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.76 7.92 -2.39 -0.02 0.74 16 45 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 46 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.12 1.66 7.65 -2.39 -0.02 1.64 16 Total: -1.00 -77.61 397.74 3.28 -74.34 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.94 Total: 36.75 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.51 Total: -42.60 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -2.66 Total: -70.06 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.54 Total: -40.63 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -77.61 3.28 -74.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819262974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.078 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds