Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48505 * 109.47363 * 239.99865 * 3 2 1 5 5 H 1.48502 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47194 * 119.99778 * 3 2 1 7 7 C 1.39945 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00155 * 163.66384 * 7 2 1 9 9 C 1.41399 * 119.99601 * 343.66228 * 7 2 1 10 10 C 1.40732 * 120.24542 * 334.05378 * 9 7 2 11 11 C 1.37599 * 119.74437 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24922 * 359.97438 * 11 10 9 13 13 C 1.38612 * 120.50134 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24661 * 359.97438 * 13 12 11 15 15 C 1.50710 * 120.12789 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46690 * 264.97769 * 15 14 13 17 17 O 1.21278 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99390 * 179.97438 * 16 15 14 19 19 C 1.47223 * 135.97029 * 0.02562 * 18 16 15 20 20 C 1.52650 * 87.77961 * 206.37740 * 19 18 16 21 21 C 1.53324 * 115.56651 * 90.04247 * 20 19 18 22 22 C 1.55025 * 103.78510 * 133.66234 * 21 20 19 23 23 C 1.55062 * 102.13408 * 20.85664 * 22 21 20 24 24 O 1.42839 * 115.96606 * 218.40583 * 20 19 18 25 25 C 1.47215 * 135.96134 * 179.62995 * 18 16 15 26 26 H 1.09001 * 113.50484 * 38.89921 * 25 18 16 27 27 C 1.53003 * 113.50165 * 268.34943 * 25 18 16 28 28 C 1.53001 * 117.49848 * 148.25414 * 27 25 18 29 29 C 1.52997 * 117.49673 * 79.59747 * 27 25 18 30 30 H 0.97001 * 119.99960 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.12983 * 359.97438 * 10 9 7 32 32 H 1.08005 * 119.87111 * 179.72139 * 11 10 9 33 33 H 1.07999 * 119.74817 * 179.97438 * 12 11 10 34 34 H 1.07993 * 119.87548 * 179.97438 * 13 12 11 35 35 H 1.08996 * 109.46563 * 24.97676 * 15 14 13 36 36 H 1.08991 * 109.46981 * 144.97523 * 15 14 13 37 37 H 1.09002 * 113.49840 * 321.10390 * 19 18 16 38 38 H 1.08995 * 113.50254 * 91.58275 * 19 18 16 39 39 H 1.08996 * 110.56677 * 252.24152 * 21 20 19 40 40 H 1.09005 * 110.56232 * 14.94383 * 21 20 19 41 41 H 1.09001 * 110.86748 * 139.01881 * 22 21 20 42 42 H 1.09005 * 110.87070 * 262.48699 * 22 21 20 43 43 H 1.08996 * 110.58545 * 82.02225 * 23 22 21 44 44 H 1.09000 * 110.58585 * 204.93717 * 23 22 21 45 45 H 1.09000 * 115.54677 * 293.92777 * 27 25 18 46 46 H 1.08998 * 117.49525 * 0.02562 * 28 27 25 47 47 H 1.09001 * 117.49489 * 145.02238 * 28 27 25 48 48 H 1.09001 * 117.49662 * 214.97822 * 29 27 25 49 49 H 1.08997 * 117.50068 * 359.97186 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0552 -1.2309 -0.2625 9 6 1.3438 -2.4116 0.3456 10 6 0.2128 -2.3802 1.1824 11 6 -0.4253 -3.5539 1.5120 12 6 0.0418 -4.7642 1.0225 13 6 1.1548 -4.8070 0.1975 14 6 1.8088 -3.6455 -0.1453 15 6 3.0184 -3.6950 -1.0429 16 6 4.2679 -3.7239 -0.2009 17 8 4.1844 -3.7055 1.0089 18 7 5.4781 -3.7701 -0.7924 19 6 5.9793 -3.8036 -2.1763 20 6 7.2216 -4.5148 -1.6462 21 6 7.1434 -6.0457 -1.6113 22 6 8.4935 -6.4986 -2.2238 23 6 9.3775 -5.2392 -2.0317 24 8 8.4612 -4.1422 -2.2503 25 6 6.8778 -3.8021 -0.3375 26 1 7.0330 -4.4180 0.5484 27 6 7.5111 -2.4148 -0.2137 28 6 8.5728 -2.2170 0.8700 29 6 7.1830 -1.5976 1.0375 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1525 -1.4387 1.5652 32 1 -1.2908 -3.5327 2.1578 33 1 -0.4650 -5.6806 1.2867 34 1 1.5102 -5.7553 -0.1777 35 1 2.9757 -4.5920 -1.6607 36 1 3.0320 -2.8131 -1.6832 37 1 5.3760 -4.4207 -2.8421 38 1 6.1852 -2.8157 -2.5880 39 1 7.0501 -6.4010 -0.5851 40 1 6.3082 -6.4002 -2.2154 41 1 8.9029 -7.3476 -1.6764 42 1 8.3791 -6.7391 -3.2809 43 1 9.7814 -5.2053 -1.0199 44 1 10.1815 -5.2194 -2.7674 45 1 7.6402 -1.8718 -1.1500 46 1 8.8204 -3.0753 1.4946 47 1 9.4003 -1.5435 0.6469 48 1 7.0969 -0.5169 0.9244 49 1 6.5158 -2.0481 1.7722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819262976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -12.444426 kcal Electronic energy + Delta-G solvation = -30535.535867 eV Core-core repulsion = 26621.624235 eV Total energy + Delta-G solvation = -3913.911632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.34644 -40.24657 -39.07664 -38.27830 -36.95055 -35.52456 -33.49479 -32.99460 -31.39429 -30.85244 -28.61236 -27.46408 -26.94481 -26.37896 -23.35762 -23.23952 -22.84585 -22.25844 -21.74114 -20.99712 -19.44691 -19.06591 -18.20509 -17.51937 -17.25014 -16.97288 -16.85999 -16.32972 -16.21733 -15.92484 -15.68899 -15.32257 -15.10223 -14.86269 -14.42584 -14.39924 -14.18163 -13.94830 -13.56979 -13.39328 -13.05610 -12.94822 -12.82588 -12.79399 -12.71793 -12.52806 -12.51763 -12.39752 -12.36161 -12.14666 -12.02927 -11.67461 -11.37740 -11.34396 -11.23959 -11.21607 -11.05552 -10.73270 -10.44965 -9.71316 -9.24527 -9.18363 -8.62193 -6.31734 0.96043 1.10071 1.31332 1.41471 1.50606 1.66185 1.86139 2.16742 2.75282 2.84304 2.86116 3.19394 3.36393 3.61360 3.73277 3.84196 3.94239 4.00491 4.06033 4.09491 4.13813 4.26599 4.34660 4.38603 4.49649 4.50423 4.57694 4.62137 4.68498 4.69073 4.72892 4.75434 4.76658 4.90009 4.92090 4.94785 4.98662 5.06982 5.11622 5.16203 5.17334 5.19656 5.23882 5.34797 5.52704 5.75182 5.96080 6.01935 6.14467 6.19667 6.40223 6.70429 6.75424 6.97069 7.08923 7.30237 8.34246 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.003867 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.587395 B = 7239.556437 C = 8705.894807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.039 3.961 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.272 1.272 7 C -0.482 4.482 8 H 0.065 0.935 9 C 0.097 3.903 10 C -0.194 4.194 11 C -0.116 4.116 12 C -0.241 4.241 13 C -0.090 4.090 14 C -0.190 4.190 15 C -0.058 4.058 16 C 0.552 3.448 17 O -0.571 6.571 18 N -0.643 5.643 19 C 0.106 3.894 20 C 0.094 3.906 21 C -0.127 4.127 22 C -0.145 4.145 23 C 0.039 3.961 24 O -0.358 6.358 25 C 0.141 3.859 26 H 0.070 0.930 27 C -0.151 4.151 28 C -0.137 4.137 29 C -0.196 4.196 30 H 0.287 0.713 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.199 -9.031 -8.024 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.197 1.197 7 C -0.512 4.512 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.213 4.213 11 C -0.134 4.134 12 C -0.260 4.260 13 C -0.108 4.108 14 C -0.191 4.191 15 C -0.098 4.098 16 C 0.344 3.656 17 O -0.449 6.449 18 N -0.380 5.380 19 C -0.017 4.017 20 C 0.052 3.948 21 C -0.164 4.164 22 C -0.182 4.182 23 C -0.037 4.037 24 O -0.275 6.275 25 C 0.037 3.963 26 H 0.088 0.912 27 C -0.170 4.170 28 C -0.174 4.174 29 C -0.233 4.233 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.118 0.882 47 H 0.137 0.863 48 H 0.112 0.888 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.750 -8.673 -7.415 21.949 hybrid contribution -0.384 1.063 0.691 1.325 sum 18.366 -7.610 -6.724 20.986 Atomic orbital electron populations 1.69863 1.08665 1.30282 1.36231 1.26598 0.95410 1.03947 0.91574 0.85498 0.79112 0.76823 0.79820 1.17886 1.18685 1.19742 1.19537 0.96875 0.92119 1.42666 0.91694 1.17707 0.91374 0.92692 0.88697 1.21299 1.00502 0.96900 1.02604 1.20960 0.99191 0.93339 0.99955 1.20720 1.01486 0.96795 1.07002 1.20723 0.95669 0.96524 0.97847 1.19521 1.00243 0.93641 1.05735 1.20172 0.88651 1.04134 0.96795 1.20699 0.83212 0.73780 0.87952 1.90658 1.86522 1.50952 1.16772 1.49593 1.04009 1.73783 1.10657 1.23224 0.91917 1.01929 0.84599 1.22884 0.85723 0.94894 0.91287 1.22569 1.00439 0.90685 1.02757 1.23182 0.93432 0.98713 1.02878 1.23863 0.92987 0.84540 1.02338 1.88771 1.20869 1.41849 1.76053 1.22575 0.79922 0.94931 0.98848 0.91218 1.22235 1.03937 0.96187 0.94641 1.22968 0.91574 1.02978 0.99886 1.22822 1.00397 0.99463 1.00667 0.90283 0.88529 0.87546 0.86497 0.86504 0.87188 0.89122 0.87479 0.88947 0.90861 0.88888 0.88498 0.89128 0.91667 0.86839 0.86776 0.88232 0.86349 0.88823 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.75 10.97 21.83 0.24 -44.51 16 2 C 0.04 2.08 5.16 85.26 0.44 2.52 16 3 Si 0.97 40.66 29.59 68.60 2.03 42.69 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.48 -27.09 8.14 23.46 0.19 -26.90 16 8 H 0.06 3.62 6.67 -2.91 -0.02 3.60 16 9 C 0.10 5.52 5.56 -21.29 -0.12 5.41 16 10 C -0.19 -10.99 8.68 22.73 0.20 -10.79 16 11 C -0.12 -5.84 10.02 22.22 0.22 -5.62 16 12 C -0.24 -11.17 10.05 22.46 0.23 -10.94 16 13 C -0.09 -4.13 9.66 22.22 0.21 -3.91 16 14 C -0.19 -9.45 4.43 -19.40 -0.09 -9.54 16 15 C -0.06 -2.37 5.01 29.10 0.15 -2.22 16 16 C 0.55 23.02 7.71 87.66 0.68 23.70 16 17 O -0.57 -29.61 16.81 -3.02 -0.05 -29.66 16 18 N -0.64 -20.55 3.45 -834.33 -2.88 -23.43 16 19 C 0.11 2.44 7.60 83.40 0.63 3.07 16 20 C 0.09 1.91 1.52 -10.82 -0.02 1.89 16 21 C -0.13 -2.04 6.46 31.40 0.20 -1.83 16 22 C -0.14 -1.51 7.17 31.99 0.23 -1.28 16 23 C 0.04 0.47 7.73 72.69 0.56 1.03 16 24 O -0.36 -6.75 10.61 -148.98 -1.58 -8.33 16 25 C 0.14 3.87 4.01 42.11 0.17 4.04 16 26 H 0.07 2.06 7.91 -2.39 -0.02 2.05 16 27 C -0.15 -4.02 4.78 -10.79 -0.05 -4.07 16 28 C -0.14 -3.03 10.24 30.62 0.31 -2.72 16 29 C -0.20 -6.00 10.25 30.62 0.31 -5.68 16 30 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 31 H 0.10 5.72 6.22 -2.91 -0.02 5.71 16 32 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.11 3.58 8.05 -2.39 -0.02 3.56 16 36 H 0.09 3.77 7.06 -2.39 -0.02 3.75 16 37 H 0.11 1.97 7.91 -2.39 -0.02 1.95 16 38 H 0.09 2.10 7.70 -2.39 -0.02 2.09 16 39 H 0.07 1.31 7.82 -2.39 -0.02 1.29 16 40 H 0.09 1.37 7.81 -2.38 -0.02 1.35 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 2.94 7.64 -2.39 -0.02 2.92 16 46 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -72.51 399.34 3.16 -69.35 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.94 Total: 37.75 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 4.46 Total: -43.86 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -2.64 Total: -67.94 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.63 Total: -37.98 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -72.51 3.16 -69.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819262976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.904 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds